Aver009443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Asbolus verrucosus
Gene Symbol
-
Assembly
GCA_004193795.1
Location
QDEB01087640.1:30027-33929[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0001 0.0053 16.9 2.4 1 23 514 536 514 536 0.97
2 18 3.2e-05 0.0016 18.5 2.5 1 20 542 561 542 564 0.94
3 18 1.8e-05 0.00092 19.3 0.8 1 23 570 592 570 592 0.98
4 18 5.7e-05 0.0029 17.7 4.4 1 21 598 618 598 620 0.95
5 18 3.2e-05 0.0016 18.5 4.6 1 23 626 648 626 648 0.99
6 18 3e-05 0.0015 18.6 5.3 1 23 654 676 654 676 0.97
7 18 5.1e-06 0.00026 21.0 7.2 1 23 682 704 682 704 0.97
8 18 1.2e-07 6e-06 26.2 2.7 1 23 710 732 710 732 0.98
9 18 8.7e-05 0.0044 17.1 6.7 1 23 738 760 738 760 0.97
10 18 5.1e-05 0.0026 17.9 5.8 1 23 766 788 766 788 0.97
11 18 3.8e-07 1.9e-05 24.5 2.9 1 23 794 816 794 816 0.98
12 18 4e-05 0.002 18.2 8.0 1 23 822 844 822 844 0.98
13 18 3.4e-05 0.0017 18.4 9.1 1 23 850 872 850 872 0.98
14 18 2e-05 0.001 19.1 7.7 1 23 878 900 878 900 0.98
15 18 1.3e-05 0.00067 19.7 7.1 1 23 906 928 906 928 0.97
16 18 9.7e-05 0.0049 17.0 0.5 1 23 934 956 934 956 0.97
17 18 0.11 5.4 7.4 5.0 1 23 966 988 966 988 0.98
18 18 8.3e-07 4.2e-05 23.5 0.9 1 23 994 1016 994 1016 0.96

Sequence Information

Coding Sequence
atgCCGCTCTCTCAGAcagacattttaaaagtgtGTGAAATATTGGCAGAACAAGAAGAATTGAGAGTGGCAGTGAACGAATCATTCAGAGGGGCTTCTATAGCATTTGGTTCGGCTTTTGTGGGAGCTCTGTTGGCCGGTCCTATTGGATTAGCTGTCGgCGGCACAATAGGAAGTGTAGTCGCCGCCGTGAGAAGTAGGAGAAAATTCAAGTCAGTCGTTCACGTAATTATGTACGAAATGCCCGAAGGAGAGAAACAAAGACTCGCGGAATCTGTTAGGAATGTTCTTTGCAGTATCGATGCGTCGGATGTTATCACTTTGCTCACAATCCTCCAGTCTAACGCAGTGTTGAGAACCGCAATCGTAGGAGTAATCAAGCGTGTTGTGACCCACAATATGGGGCCACCCCCGACCACGTCGATCCCGACCGATCTGAGGGTGAACACGACAGCTCTGAACGCTGTCGCGCTCAGTAGCGTGGCGAAGTACTGGGTCTTGACCAACCTGCTCCCAGGTCCCATCCCGCAGGTGTCCGTCTATGGATTGCCGGGATCTGGTCGTAGCGACAACCAGGGAAAAATCTCGCAGGAGGCCATGTTGGGACAGCACGCGGCGGGCCTCTTGCCGGCCGACCCGCTCCTGCTCCAACAGCATTCCCAAATCCCGGTCAGCATATCCACGTCGCAGGGCGTCACGAATCTGTCGATACCGACCGGCAGTATGCATCTGGAGAACAACCACCAGAATCACAGCTCTCTTTCCGGTCATCAGCAGAACGATCACCTGGTTTCCAACCAGAACCAGATGAGTAGAGATATGTCGCACCAGCAGCAGAATCACAGCAACCAACAGAACATGGTTCAGGTTCAGGTCCAAGATAATCTCGTGTCGGTGATCGAAGATAGCAAAGAACAGAAGGATATCATAGCGGCGCAGTTGGCTCACGCGCAGATTCAGCTGAACGATAACCAGCATTTGAATCAGCAGGCCTTGACCGTGCAGCAGTTGCAACATCTCCAAGTGCAACAGGTTCTGGATAATGTGGTCCGGATGGAGAATTCGGTGGAAAACGGCCAGAACCAGTCGAACAGCGACCAAACTCAGCTCTCCGATAACATTCAGATAGTCAAAGACGAGAAGAACTTGCAGAATTGCAAACTGCTGTCGGGCGCCCAGTTCGGCCTGCAGGACCACAAGGGTAACTTGATGGATGTGAGGACCGCCGACGGTAGCATCGTGAAGATCTCGACCAACCTGCAAGAGCAAGACCTGGCCAAAACTCTGGGGGTCGAGATGGTGCAGAACATGTACAAAGTCAACGTGGACGACTTGAACCAGCTGTTGGCTTACCACGAGGTGTTCGGGAAGCTGCAGGGCGAAATCGCGACGACCGGACAGAACATCGTTCAAAACACCAATTCCAACGTTAATTTGCAGCAGAACGCGAACAACATCGCGATCGTCACGAAGGACGAGCAAGAACCTTCGACGAGTTCGTTGCCGAACGACAACACCGCCGCGGTCATTACAGGGAACCATGTCTGTGATTTGTGTGGGAAAATGTTCCAGTTTCGTTACCAGTTAATCGTCCATAGACGTTACCACACCGAAAGAAAGCCGTTCACTTGCCAGGTTTGCGGCAAAGCCTTTACGAATTCGCAAGAACTAACGCGCCACGGAAAGTGCCATCTAGGAGGTAGTATGTTCACTTGTGCCGTTTGTTTCCACGTTTTCGCGAACGCTGCGTCCTTGGAAAGGCACATGAAGCGACACTCCACCGACAAGCCGTACAACTGCACCATCTGCGGCAAGTCTTTCGCCAGGAAGGAACATCTCGACAACCACACGAGGTGTCACACGGGCGAGACTCCCTACAGGTGTCAGTATTGTGCCAAAACTTTCACCAGGAAAGAACACATGGTGAACCACGTCAGGAAGCACACGGGAGAGACGCCGCATCGGTGCGAGATCTGCAAGAAGTCCTTCACTAGGAAGGAACACTTCATGAATCACGTGATGTGGCACACGGGCGAGACCCCGCATCACTGTACGATTTGCGGCAAGAAATACACGAGGAAGGAGCACCTGGCCAATCACATGAGGTCGCACACTAACGACACTCCGTTCAGGTGCGAGATCTGCGGGAAGTCGTTCACTAGGAAAGAACATTTCACGAATCACATCATGTGGCATACAGGAGAGACTCCTCATAGGTGCGATTTTTGTTCGAAAACCTTCACTAGGAAGGAGCACTTGTTGAATCACGTCAGGCAGCACACGGGGGAATCACCGCACCGTTGCGGCTTCTGCTCCAAGTCTTTCACCAGGAAGGAACATCTGATCAACCACGTGCGTCAGCACACCGGTGAAACCCCGTTCAGGTGCAATTATTGTCCCAAAGCTTTCACTAGGAAGGACCATTTAGTTAATCACGTGCGTCAGCACACCGGGGAGTCTCCCCACAAGTGTACGTTCTGCACGAAATCGTTCACTAGGAAAGAACATTTGAACAATCACGTGCGACAGCACACGGGTGAGTCGCCCCACCGTTGCCACTTCTGTTCGAAATCTTTCACCAGGAAGGAGCATCTGACCAATCACGTGCGGATCCACACGGGCGAGTCCCCCCACCGGTGCGAATTCTGCCAGAAAACTTTCACCAGGAAGGAGCACCTCACCAACCACCTGCGCCAGCACACGGGCGAGACGCAGCATTGCTGCAACGTGTGCTCCAAGCCCTTCACGCGGAAGGAGCACCTCATCAACCACATGCGGTCGCACACGGGCGAGCGCCCTTTCGCCTGCACGGAGTGCGGCAAGTCGTTCCCGCTCAAGGGCAACCTGCTGTTCCACCAGCGGTCTCACAACAAAGGCGCCACCGCCGACCGGCCCTTCAGGTGCGACCTGTGCGAGAAGGATTTCATGTGCAAAGGGCATCTGGTGTCGCATCGGCGGTCGCACAGCGGCGAACGCCCGCACGCCTGTCCCGACTGCGGCAAGACCTTCGTCGAGAAGGGCAACATGCTGAGGCACCTGCGCAAGCACGCCGTCGAGAACGGCCAGGGCGAGCAGAACATAGCCGCGGGCCAGGCCGCGGCCAACACCCAGCCGCAGACCTCGGGGGCGAACCTGCAGATCCCGCAGGTGAGCCAGACGCAGCAGACGGCTTCCAGCAACATCGTGACGCAGTCGCCGCATCTGCCCATGCATCCGCCGAGCAATCATCCTGTCGTTGTGCCTACTGCGAACGGTAATGTATTGGCTAGTTACTAG
Protein Sequence
MPLSQTDILKVCEILAEQEELRVAVNESFRGASIAFGSAFVGALLAGPIGLAVGGTIGSVVAAVRSRRKFKSVVHVIMYEMPEGEKQRLAESVRNVLCSIDASDVITLLTILQSNAVLRTAIVGVIKRVVTHNMGPPPTTSIPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGSGRSDNQGKISQEAMLGQHAAGLLPADPLLLQQHSQIPVSISTSQGVTNLSIPTGSMHLENNHQNHSSLSGHQQNDHLVSNQNQMSRDMSHQQQNHSNQQNMVQVQVQDNLVSVIEDSKEQKDIIAAQLAHAQIQLNDNQHLNQQALTVQQLQHLQVQQVLDNVVRMENSVENGQNQSNSDQTQLSDNIQIVKDEKNLQNCKLLSGAQFGLQDHKGNLMDVRTADGSIVKISTNLQEQDLAKTLGVEMVQNMYKVNVDDLNQLLAYHEVFGKLQGEIATTGQNIVQNTNSNVNLQQNANNIAIVTKDEQEPSTSSLPNDNTAAVITGNHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNSQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCNYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETQHCCNVCSKPFTRKEHLINHMRSHTGERPFACTECGKSFPLKGNLLFHQRSHNKGATADRPFRCDLCEKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHAVENGQGEQNIAAGQAAANTQPQTSGANLQIPQVSQTQQTASSNIVTQSPHLPMHPPSNHPVVVPTANGNVLASY