Basic Information

Insect: Pycnomerus fuliginosus
Gene Symbol: -
Assembly: GCA_963924575.1
Location: OZ004623.1:7559396-7562555[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00019 0.011 17.0 2.4 1 23 401 423 401 423 0.97

2 18 5.7e-05 0.0033 18.7 1.8 1 20 429 448 429 451 0.94

3 18 3.2e-05 0.0019 19.4 0.8 1 23 457 479 457 479 0.98

4 18 0.0001 0.0059 17.9 4.4 1 21 485 505 485 507 0.95

5 18 0.00028 0.017 16.5 4.7 1 23 513 535 513 535 0.99

6 18 5.4e-05 0.0031 18.7 5.3 1 23 541 563 541 563 0.97

7 18 9e-06 0.00053 21.2 7.2 1 23 569 591 569 591 0.97

8 18 2.1e-07 1.2e-05 26.3 2.7 1 23 597 619 597 619 0.98

9 18 0.00015 0.009 17.3 6.7 1 23 625 647 625 647 0.97

10 18 9e-05 0.0053 18.0 5.8 1 23 653 675 653 675 0.97

11 18 6.8e-07 4e-05 24.7 2.9 1 23 681 703 681 703 0.98

12 18 7.1e-05 0.0042 18.4 8.0 1 23 709 731 709 731 0.98

13 18 6e-05 0.0035 18.6 9.1 1 23 737 759 737 759 0.98

14 18 3.6e-05 0.0021 19.3 7.7 1 23 765 787 765 787 0.98

15 18 2.3e-05 0.0014 19.9 7.1 1 23 793 815 793 815 0.97

16 18 0.00017 0.01 17.1 0.5 1 23 821 843 821 843 0.97

17 18 0.19 11 7.6 5.0 1 23 853 875 853 875 0.98

18 18 1.5e-06 8.7e-05 23.6 0.9 1 23 881 903 881 903 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00019	0.011	17.0	2.4	1	23	401	423	401	423	0.97
2	18	5.7e-05	0.0033	18.7	1.8	1	20	429	448	429	451	0.94
3	18	3.2e-05	0.0019	19.4	0.8	1	23	457	479	457	479	0.98
4	18	0.0001	0.0059	17.9	4.4	1	21	485	505	485	507	0.95
5	18	0.00028	0.017	16.5	4.7	1	23	513	535	513	535	0.99
6	18	5.4e-05	0.0031	18.7	5.3	1	23	541	563	541	563	0.97
7	18	9e-06	0.00053	21.2	7.2	1	23	569	591	569	591	0.97
8	18	2.1e-07	1.2e-05	26.3	2.7	1	23	597	619	597	619	0.98
9	18	0.00015	0.009	17.3	6.7	1	23	625	647	625	647	0.97
10	18	9e-05	0.0053	18.0	5.8	1	23	653	675	653	675	0.97
11	18	6.8e-07	4e-05	24.7	2.9	1	23	681	703	681	703	0.98
12	18	7.1e-05	0.0042	18.4	8.0	1	23	709	731	709	731	0.98
13	18	6e-05	0.0035	18.6	9.1	1	23	737	759	737	759	0.98
14	18	3.6e-05	0.0021	19.3	7.7	1	23	765	787	765	787	0.98
15	18	2.3e-05	0.0014	19.9	7.1	1	23	793	815	793	815	0.97
16	18	0.00017	0.01	17.1	0.5	1	23	821	843	821	843	0.97
17	18	0.19	11	7.6	5.0	1	23	853	875	853	875	0.98
18	18	1.5e-06	8.7e-05	23.6	0.9	1	23	881	903	881	903	0.96

Sequence Information

Coding Sequence: ATGCTTTTGAGTAAAGCGGAAGTTAATTcggagaatttttttttagtcgTGGACATTAATGGAACTACTCAAAGACCTCCTCCAACAACCTCAATCCCCACGGATCTTCGGGTCAACACTACTGCTTTGAACGCAGTAGCTCTGAGCAGCGTGGCAAAATATTGGGTTTTAACGAATTTGCTGCCTGGCCCTATTCCTCAAGTTTCCGTGTACGGCCTTCCAGGGTCGACTCGTTGCGACAGTCAAACCAAGATCTCATCACAGGAGGCCATGCTGAGTCAACATACAGGGTTATTACCGGCCGATCCTCTTCTCCTACAACAGCACTCTCAAATTCCAGTTAGCATATCGACGTCACAAGGTGTCACTAATCTGTCCATACCGACTGGTAGCATGCATATTGAAAATAACCACCAAAACCACAGCTCTCTTTCCACTCACCAACAGAACGATGCACTTACATTACCAAACCCAAACCAAATGAATCGGGATATGTCGCATCAGCATGGAAACCAACAGAATATGGTTCAGGTCCAAGTACAAGATAATTTAGTGTCTGTGATCGAAGATAGCAAAGAGCAGAAGGATATAATAGCTGCGCAGTTGGCTCAAGCGCAGATACAACTCAACGACAACCAGCATTTGAATCAGCAGGCTCTGACTGTGCAACAGTTGCAACATCTCCAAGTGCAACAGGTTTTAGACAATGTGGTTCGGATGGAAAATTCAGTGGAAAATAATCAAAACCAATCGGGGAATGAACAAACTCAACTTGGTGATAATATTCAGATAATAAAAGATGAGAAGAATTTGCAGAATTGTAAGTTGCTGTCAAGTACTCAATTCGGTTTGCAAGACCACAAAGGTAACTTAATGGATGTTCGTACCGCTGATGGAAGTATAGTTAAGATTTCCACGAATTTGCAAGAACAGGATTTGGCTAAGACTCTCGGCGTTGAGATGGTGCAAAATATGTATAAAGTTAACGTTGACGATTTAAATCAGTTGCTGGCTTACCATGAAGTTTTTGGTAAGCTACAAGGAGATATTGCAACAACTGGACAGAACGTAGTTCAGAACAGTAATACCAACGTTAATTTACAAGCGACTAATAATATTGCAATTGTGACAAAGGATGAACAGGAGCCGTCAACTAGTAGCTTACAGACTGACAACACAGCTACCGTTATTACAGGGAACCATGTCTGTGATCTTTGTGGAAAAATGTTCCAATTTCGTTACCAATTAATCGTTCATCGACGTTACCACACTGAAAGAAAACCTTTCACTTGCCAGGTATGCGGCAAAGCGTTTACTAACGCCCAAGAACTGACAcgtcacggaaagtgccatttaggagGTAGTATGTTTACTTGTGCCGTTTGTTTCCACGTGTTCGCCAATGCGGCGTCGTTAGAGCGACACATGAAACGCCACTCGACTGATAAACCTTACAACTGTACTATTTGTGGTAAGTCTTTCGCTAGGAAAGAGCATTTAGATAACCACACGAGGTGTCATACTGGTGAAACACCCTACAGATGTCAGTTTTGTGCCAAAACTTTCACCAGAAAAGAGCATATGGTAAATCACGTGCGAAAGCATACAGGTGAAACTCCGCATCGTTGCGAGATTTGTAAGAAGTCATTCACGAGAAAAGAACATTTCATGAATCACGTGATGTGGCATACTGGTGAAACGCCTCATCACTGTACTATTTGCGGTAAGAAGTATACTAGAAAGGAGCATCTAGCCAACCATATGAGATCTCATACCAACGATACTCCGTTTAGATGTGAAATTTGCGGGAAGTCTTTCACTAGAAAAGAACACTTTACGAATCATATCATGTGGCATACTGGTGAAACGCCTCATCGATGCGATTTTTGTTCGAAAACTTTTACGAGGAAAGAACATTTGTTGAATCACGTGAGGCAACACACGGGGGAATCACCGCATCGTTGTGGTTTTTGTTCCAAGTCTTTCACTAGAAAGGAACATTTAATTAACCACGTACGTCAACACACGGGGGAAACCCCGTTCAGGTGCAATTACTGTCCAAAGGCTTTTACTAGAAAGGACCATTTGGTTAACCACGTAAGACAACATACGGGTGAATCCCCCCACAAGTGTACTTTCTGTACCAAATCGTTCACTAGAAAAGAACACTTGAATAATCACGTCAGACAACACACAGGGGAATCGCCTCATCGTTGCCATTTCTGTTCCAAGTCTTTTACAAGAAAGGAACATTTAACGAATCACGTGAGGATACACACAGGGGAGTCACCTCACAGGTGTGAGTTTTGCCAGAAGACTTTTACTAGAAAAGAACATTTAACGAATCACCTTCGCCAGCATACAGGGGAGACCCAACACTGTTGTAACGTTTGCTCGAAACCGTTTACTCGCAAGGAGCACTTAATTAACCACATGAGATCACACACCGGAGAGCGTCCTTTTGCATGTACGGAATGTGGAAAATCTTTTCCACTAAAGGGAAATCTTCTGTTCCACCAGAGGTCGCACAATAAAGGTGCCACAGCTGATAGACCTTTCCGGTGTGACCTTTGCGAGAAAGACTTCATGTGTAAGGGTCACTTAGTGTCTCACAGGAGGTCACACAGCGGCGAACGTCCACACGCCTGCCCAGACTGTGGGAAAACTTTTGTGGAAAAGGGGAATATGTTGAGACACCTTAGGAAACACGTAGTAGAAAATGGACAAAACACGACTGAGCAACAAAACATCACAACCAATCAGGTTCAAACAAGTCAAACCAACAACCAACCACAGACTTCCGGCGCCAACTTGCAAATACCGCAAGTCAACCAGAATCAACAGACCACTGCGCCTAGTAATATAGTGCCGCAGTTGCCAATGCATACACCCAACAGTCATCCTGTTGTTGTGCCTACAGCAAACGGTAATGTTTTAGCTAGTTATTAG
Protein Sequence: MLLSKAEVNSENFFLVVDINGTTQRPPPTTSIPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGSTRCDSQTKISSQEAMLSQHTGLLPADPLLLQQHSQIPVSISTSQGVTNLSIPTGSMHIENNHQNHSSLSTHQQNDALTLPNPNQMNRDMSHQHGNQQNMVQVQVQDNLVSVIEDSKEQKDIIAAQLAQAQIQLNDNQHLNQQALTVQQLQHLQVQQVLDNVVRMENSVENNQNQSGNEQTQLGDNIQIIKDEKNLQNCKLLSSTQFGLQDHKGNLMDVRTADGSIVKISTNLQEQDLAKTLGVEMVQNMYKVNVDDLNQLLAYHEVFGKLQGDIATTGQNVVQNSNTNVNLQATNNIAIVTKDEQEPSTSSLQTDNTATVITGNHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCNYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETQHCCNVCSKPFTRKEHLINHMRSHTGERPFACTECGKSFPLKGNLLFHQRSHNKGATADRPFRCDLCEKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHVVENGQNTTEQQNITTNQVQTSQTNNQPQTSGANLQIPQVNQNQQTTAPSNIVPQLPMHTPNSHPVVVPTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167784;
90% Identity: iTF_00415298;
80% Identity: -