Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: -
Assembly: GCA_905333025.1
Location: HG995155.1:10980982-10988498[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0001 0.0072 17.0 2.4 1 23 405 427 405 427 0.97

2 18 0.00014 0.01 16.6 2.0 1 20 433 452 433 455 0.93

3 18 1.8e-05 0.0012 19.4 0.8 1 23 461 483 461 483 0.98

4 18 5.6e-05 0.0039 17.9 4.4 1 21 489 509 489 511 0.95

5 18 3.1e-05 0.0022 18.7 4.6 1 23 517 539 517 539 0.99

6 18 3e-05 0.0021 18.7 5.3 1 23 545 567 545 567 0.97

7 18 5e-06 0.00035 21.2 7.2 1 23 573 595 573 595 0.97

8 18 1.2e-07 8e-06 26.3 2.7 1 23 601 623 601 623 0.98

9 18 8.5e-05 0.0059 17.3 6.7 1 23 629 651 629 651 0.97

10 18 9.7e-06 0.00067 20.3 5.6 1 23 657 679 657 679 0.97

11 18 3.8e-07 2.6e-05 24.7 2.9 1 23 685 707 685 707 0.98

12 18 4e-05 0.0028 18.4 8.0 1 23 713 735 713 735 0.98

13 18 3.3e-05 0.0023 18.6 9.1 1 23 741 763 741 763 0.98

14 18 2e-05 0.0014 19.3 7.7 1 23 769 791 769 791 0.98

15 18 1.3e-05 0.0009 19.9 7.1 1 23 797 819 797 819 0.97

16 18 0.00019 0.014 16.2 0.2 1 23 825 847 825 847 0.97

17 18 0.1 7.2 7.6 5.0 1 23 857 879 857 879 0.98

18 18 8.2e-07 5.7e-05 23.6 0.9 1 23 885 907 885 907 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0001	0.0072	17.0	2.4	1	23	405	427	405	427	0.97
2	18	0.00014	0.01	16.6	2.0	1	20	433	452	433	455	0.93
3	18	1.8e-05	0.0012	19.4	0.8	1	23	461	483	461	483	0.98
4	18	5.6e-05	0.0039	17.9	4.4	1	21	489	509	489	511	0.95
5	18	3.1e-05	0.0022	18.7	4.6	1	23	517	539	517	539	0.99
6	18	3e-05	0.0021	18.7	5.3	1	23	545	567	545	567	0.97
7	18	5e-06	0.00035	21.2	7.2	1	23	573	595	573	595	0.97
8	18	1.2e-07	8e-06	26.3	2.7	1	23	601	623	601	623	0.98
9	18	8.5e-05	0.0059	17.3	6.7	1	23	629	651	629	651	0.97
10	18	9.7e-06	0.00067	20.3	5.6	1	23	657	679	657	679	0.97
11	18	3.8e-07	2.6e-05	24.7	2.9	1	23	685	707	685	707	0.98
12	18	4e-05	0.0028	18.4	8.0	1	23	713	735	713	735	0.98
13	18	3.3e-05	0.0023	18.6	9.1	1	23	741	763	741	763	0.98
14	18	2e-05	0.0014	19.3	7.7	1	23	769	791	769	791	0.98
15	18	1.3e-05	0.0009	19.9	7.1	1	23	797	819	797	819	0.97
16	18	0.00019	0.014	16.2	0.2	1	23	825	847	825	847	0.97
17	18	0.1	7.2	7.6	5.0	1	23	857	879	857	879	0.98
18	18	8.2e-07	5.7e-05	23.6	0.9	1	23	885	907	885	907	0.96

Sequence Information

Coding Sequence: ATGAACACCAGTGATCCTAATGCCCTCACGGGGGCCCACAACGGCGATTCGTCCGAGGCTGGCACTCAGAGACCTCCGACTACCACAATACCAACAGATCTTCGAGTGAATACGACAGCCTTAAACGCTGTGGCACTCAGCAGCGTGGCGAAGTACTGGGTGCTCACCAACTTGCTTCCAGGACCTTTGCCCCAGGTTTCGGTCTATGGTTTACCGGGGTCGGGCCGTAACGACAACCAAGGCGGCAAAATTTCCCAGGAGGCGATGATGGGACAACACGCCGCGGGGCTTTTGCCCGCTGATCCCCTTCTTTTGCAACAACACTCCCAAATCCCTGTAAGCATATCAACGTCGCAAGGTGTTGCTAACTTATCGATACCAGCCAGTGCCATGCATCTCGAAAACAACCACCAGAACCACAGTGGATTGAGTAATCATCAACAAAACGATGGGTTGACAGTCCAAAACCAGAACCAATTGAATCGAGAGATGTCCCATCAACAACAACAGAACCGCAACAACCAACAGAACATGGTTCAAGTTCAAGTTCAAGATAATTTAGTGTCCGTCATAGAGGATTCTAAAGATCAAAAAGATATTATAGCGGCGCAATTAGCGCATGCGCAGCTTCAGTTAAATGACAACCAACACTTGAACCAACAAGCTTTAACTGTGCAACAACTACAACATCTTCAAGTGCAGCAAGTTCTTGACAATGTGGTGAGGATGGACACTTCTGTGGAGAACAATCAGAACCAGTCCAACAATGAACAGAACCAACTCGCTGATAACCTCCAGATAGTTAAAGACGAGAAAAATTTGCAGAATTGTAAATTGTTGTCGGGGGCGCCATTCGGGTTGCAGGACCACAAGGGTAACTTCATGGACGTTAGGACTGCCGACGGCAGCATAGTTAAAATATCAACCAACTTGCAAGAGCAAGATTTAGCTAAAACTTTAGGCGTCGAAATGGTTCAAAACATGTATAAAGTTAATGTGGATGATTTGAACCAGTTACTGGCTTACCATGAAGTTTTTGGTAAATTACAAGGCGAAATTCCGACCGCTGGACAAAATATCGTCCAAAATAATGCTACTAACGTTAATTTGCAACAAAATACTAACAATATCGCTATAGTTACTAAAGATGAGCAAGAACCTTCGACTAGTACGCTATCTACCGATAACACTACAGCTGTAATTACCGGGAGTCATGTCTGTGATTTGTGCGGAAAAATGTTTCAGTTTCGCTACCAACTGATCGTCCATAGACGTTACCACACCGAAAGAAAGCCGTTTACGTGTCAGGTTTGCGGCAAGGCTTTCACGAATTCTCAAGAATTGACGTTGCACGGCAAATGTCATTTGGGGGGCAGCATGTTTACTTGCGCTGTTTGTTTTCATGTTTTCGCGAACGCAGCTTCTTTAGAGCGCCACATGAAGCGCCATTCGACTGATAAACCTTATAATTGCACGATTTGTGGAAAGTCTTTCGCCAGAAAGGAACACCTAGACAACCACACCAGGTGTCATACAGGTGAAACGCCATATCGTTGTCAGTATTGCGCCAAAACTTTCACTAGGAAAGAACATATGGTCAATCACGTGAGAAAGCATACCGGCGAAACTCCTCATAGGTGTGAAATCTGTAAAAAATCTTTTACTAGAAAGGAACATTTCATGAATCATGTTATGTGGCATACTGGGGAAACCCCCCATCATTGCACGATTTGCGGCAAAAAGTATACAAGAAAAGAACATTTAGCGAATCACATGAGATCGCATACTAATGATACGCCTTTTAGGTGCGAAATTTGTGGGAAATCTTTTACTAGAAAAGAACACTTTACGAACCATATCATGTGGCATACCGGAGAAACCCCTCATCGTTGCGATTTTTGTTCGAAAACGTTCACTCGTAAAGAACATTTACTTAATCACGTCAGACAACATACAGGGGAATCGCCGCATCGCTGTGGTTACTGTTCGAAATCGTTCACTAGAAAAGAACATTTAATTAATCACGTTCGACAACATACCGGGGAAACACCCTTCAGATGCAACTACTGTCCCAAGGCCTTTACGAGAAAGGACCATTTGGTTAACCATGTACGTCAACATACCGGTGAATCGCCTCACAAGTGCACTTTCTGCACCAAATCCTTTACTAGAAAAGAACATTTAAATAACCACGTGAGACAACATACTGGAGAATCACCCCATCGTTGTCATTTCTGTTCCAAGTCTTTCACACGAAAGGAACATTTAACGAATCACGTCAGGATTCACACCGGCGAATCCCCGCATCGTTGCGAGTTCTGCCAGAAAACCTTCACTAGAAAAGAACATTTAACCAATCACTTGCGTCAACACACAGGCGAAACCCAACATTGTTGCAACGTTTGTTCGAAACCTTTTACTAGAAAAGAACATCTAATAAATCACATGCGTTCACATACAGGCGAACGTCCTTTCGCTTGCGGTGAATGCGGTAAATCGTTTCCTCTCAAAGGCAATTTATTGTTCCATCAACGATCACATAACAAAGGTGCTACTGCTGATAGACCTTTCCGTTGCGATTTGTGCGAAAAAGATTTCATGTGCAAAGGTCACTTGGTGTCTCATAGAAGGTCTCATAGTGGTGAACGACCTCATGCTTGTCCCGATTGTGGCAAAACTTTCGTCGAAAAAGGCAACATGTTGAGGCATTTACGAAAACATACCGCTGAAAACGGTCAAGCTGCATCTGAACCACGAAACATCGCTCCCAACGGTCAAGTTCCCCAACCGCAAACGTCCGTTGCTAATTTGCAAATACCGCAAGTGAGTCAAACTCAAAGTACGTCACCTAATATTGTGACGCAAACAACTCATTTGCCGATGCATCCGCCGAGTAATCATCCTGTTGTTGTGCCTACAGCGAACGGTAACGTTTTGGCTACGTACTAA
Protein Sequence: MNTSDPNALTGAHNGDSSEAGTQRPPTTTIPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPLPQVSVYGLPGSGRNDNQGGKISQEAMMGQHAAGLLPADPLLLQQHSQIPVSISTSQGVANLSIPASAMHLENNHQNHSGLSNHQQNDGLTVQNQNQLNREMSHQQQQNRNNQQNMVQVQVQDNLVSVIEDSKDQKDIIAAQLAHAQLQLNDNQHLNQQALTVQQLQHLQVQQVLDNVVRMDTSVENNQNQSNNEQNQLADNLQIVKDEKNLQNCKLLSGAPFGLQDHKGNFMDVRTADGSIVKISTNLQEQDLAKTLGVEMVQNMYKVNVDDLNQLLAYHEVFGKLQGEIPTAGQNIVQNNATNVNLQQNTNNIAIVTKDEQEPSTSTLSTDNTTAVITGSHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNSQELTLHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCNYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETQHCCNVCSKPFTRKEHLINHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGATADRPFRCDLCEKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTAENGQAASEPRNIAPNGQVPQPQTSVANLQIPQVSQTQSTSPNIVTQTTHLPMHPPSNHPVVVPTANGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167784;
90% Identity: iTF_00415298;
80% Identity: -