Spla012860.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- -
- Assembly
- GCA_949788335.1
- Location
- OX460926.1:4881591-4885882[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.3e-05 0.0027 18.0 2.2 1 23 404 426 404 426 0.97 2 18 2.1e-05 0.0017 18.7 2.5 1 20 432 451 432 454 0.94 3 18 1.2e-05 0.00098 19.4 0.8 1 23 460 482 460 482 0.98 4 18 3.7e-05 0.0031 17.9 4.4 1 21 488 508 488 510 0.95 5 18 2.1e-05 0.0017 18.7 4.6 1 23 516 538 516 538 0.99 6 18 2e-05 0.0016 18.7 5.3 1 23 544 566 544 566 0.97 7 18 1.3e-05 0.001 19.3 7.6 1 23 572 594 572 594 0.97 8 18 7.7e-08 6.3e-06 26.3 2.7 1 23 600 622 600 622 0.98 9 18 5.7e-05 0.0047 17.3 6.7 1 23 628 650 628 650 0.97 10 18 3.3e-05 0.0027 18.0 5.8 1 23 656 678 656 678 0.97 11 18 3.7e-07 3e-05 24.2 2.8 1 23 684 706 684 706 0.98 12 18 2.6e-05 0.0022 18.3 8.0 1 23 712 734 712 734 0.98 13 18 2.2e-05 0.0018 18.6 9.1 1 23 740 762 740 762 0.98 14 18 1.3e-05 0.0011 19.3 7.7 1 23 768 790 768 790 0.98 15 18 8.7e-06 0.00071 19.9 7.1 1 23 796 818 796 818 0.97 16 18 0.0002 0.016 15.6 0.2 1 23 824 846 824 846 0.97 17 18 0.11 9.2 6.9 5.6 1 23 856 878 856 878 0.98 18 18 5.5e-07 4.5e-05 23.6 0.9 1 23 884 906 884 906 0.96
Sequence Information
- Coding Sequence
- ATGAACAATAGTGACCCCAATGCCCTGCAAGGGCCCCACAACCCCGACACGGCAGAGGGGACGACGCAAAGACCGCCTCCGACGACCACGATCCCGACGGATCTCCGCGTGAACACGACGGCCCTGAACGCCGTCGCCCTGAGTAGCGTGGCAAAGTACTGGGTGCTCACCAATCTCCTGCCCGGTCCCATTCCGCAGGTGTCCGTTTACGGGATCCATGGGTCCGGTAGGGCCGACAACCAGGGCAAAATCTCCCAGGACGCCATGCTAGGCCAGCACACCGCCGGTCTTCTACCCGGCGACCCCCTGCTGCTGCAGCACAACTCGCAGATCCCGGTCAGCATTTCCACGTCGCAAGGCGTCGCCAGTTTATCGATACCGGCCAGCGCCATGCACCTGGACAACAACCACCAGAACCACCATCAACTCAACGACGCCATTTCCGTGTCCAACCAGAACCAGATGAATCGAGAAATGTCTCATCAGCAACAGCAGAATCATGGaaaccaacaacaacaacaacagcagcagcagcaacagaaCATGGTGCAGGTGCAAGTCCAGGATAATTTGGTGTCGGTGATCGAAGACTCTAAAGAGCAGAAGGAGATAATCGCGGCCCAGTTGGCGCACGCCCAAATCCAACTGAACGACAATCAAGTCCAACAGTTGCAACATTTACAGGTGCAGCAAGTGTTGGATAACGTGGTTCGCATGGAGAGTTCGGTCGAGAACAATCAGAACCAATCGAACGAGCAGAACCAGCTCTCCGAGAATATGCAGATCGTCAAAGACGAAAAGACGTTACAGAATTGCAAGCTGATTTCTAGTGCCCAGTTCGGTCTGCAAGATCACAAAGGGAACAACCTGATGGACGTGAGGACGGCCGACGGGAGCATCGTCAAAATCTCGACCAACATGCAAGAACAAGATCTCGCCAAAACTCTGGGCGTCGAAATGGTGCAAAACATGTACAAGGTGAACGTGGACGAACTCAATCAACTGCTGGCTTATCACGAAGTGTTTGGGAAAATGCAAGGGGAAATCACGACTTCCGCTCCGACCATTCAGAATACTAACGTCGTGAATTTgcaacagcaacagcagcagcagcagaacAATATCGCGTTGGTCACGAAAGACGAGCAGGAGCCTTCGACTAGCACGTTACCGAACGACGGAAGCAGCCCCACGGTGATTACAGGGAACCACGTCTGTGATTTGTGCGGAAAGATGTTTCAGTATCGGTACCAGTTGATAGTGCACAGGCGTTACCATACCGAACGCAAACCGTTCACGTGTCAGGTGTGCGGCAAGGCGTTCACGAATTCGCAGGAGCTGACCAGACACGGCAAGTGTCACCTGGGCGGCAGCATGTTCACGTGCGCTGTGTGTTTTCACGTGTTCGCGAACGCGGCCTCGCTCGAACGACACATGAAACGCCACTCGACGGACAAACCGTACAACTGCACCATATGCGGCAAGAGTTTCGCGCGGAAAGAGCACCTCGACAACCACACCAGATGCCACACGGGGGAGACCCCCTATAGGTGCCAGTACTGTGCCAAAACTTTCACCAGGAAAGAACACATGGTCAATCACGTGCGCAAGCACACGGGCGAGACGCCTCACAGATGCGAAATTTGTAAAAAGTCCTTCACCAGGAAGGAGCATTTCATGAACCACGTGATGTGGCACACTGGGGAGACCCCTCATCATTGCACGCTGTGCGGTAAAAAGTACACGCGTAAGGAGCACCTCGCCAATCATATGCGCTCTCACACTAACGATACGCCCTTCAGGTGCGAGATATGCGGCAAGTCGTTCACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGTGAGACGCCCCATAGGTGCGACTTTTGCTCCAAGACCTTTACGAGGAAGGAGCATTTGTTGAATCATGTCAGGCAGCACACGGGCGAATCGCCTCATAGGTGCGGGTTCTGCTCGAAATCTTTCACCAGGAAAGAGCACCTGATTAATCATGTCAGGCAGCACACTGGCGAGACCCCTTTCAGGTGCAGTTATTGCCCTAAGGCGTTCACCAGGAAGGACCATTTGGTTAATCATGTGAGGCAGCACACGGGCGAATCGCCGCACAAGTGCACGTTCTGCACGAAATCGTTCACGCGCAAGGAGCACCTGAACAATCACGTGCGACAGCACACGGGCGAATCGCCGCATCGCTGTCacttttgctcgaaatcgTTCACCAGGAAGGAGCACCTGACCAATCACGTCCGGATACACACCGGCGAGTCGCCGCACCGATGCGAATTCTGTCAAAAGACTTTCACGCGCAAGGAGCACCTCACTAATCACCTGAGGCAGCACACGGGCGAGACGCAGCACTGCTGTAACGTCTGCTCGAAACCGTTCACGCGCAAGGAGCACCTGATCAACCATATGAGGTCGCACACGGGCGAGCGGCCGTTCGCTTGCGCCGAATGCGGCAAGAGTTTCCCCCTGAAAGGTAACCTGCTCTTTCATCAGCGTTCGCATAATAAGGGGGCGAACGCGGAGAGGCCTTTCAGGTGCGACCTGTGCAGCAAGGACTTTATGTGCAAGGGGCATCTCGTGTCGCACAGGAGGTCGCATTCGGGGGAGAGGCCGCACGCTTGCCCGGATTGCGGGAAGACTTTTGTGGAGAAAGGGAACATGTTGAGGCATTTGCGGAAGCATACGGTGGAGAACGGGCAGAATGCGACGACGCAACAGGCCGCTCAGGTGACGCAGAATAATCAGACGCAAACCGCTGTTTCGGTGGCGAGTTTGCAGATTCCGCAAGTCGGGCAGaatcagcagcagcagcagcagacgAGTACGGCGAATAATATAATAGCGCAAAGCACTCATTTGCCGATGCATCCACCTAGCAGTCATCCGGTCGTCGTGCCTACGGCCAACGGTAACGTCTTGGCCACTTATTGA
- Protein Sequence
- MNNSDPNALQGPHNPDTAEGTTQRPPPTTTIPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGIHGSGRADNQGKISQDAMLGQHTAGLLPGDPLLLQHNSQIPVSISTSQGVASLSIPASAMHLDNNHQNHHQLNDAISVSNQNQMNREMSHQQQQNHGNQQQQQQQQQQQNMVQVQVQDNLVSVIEDSKEQKEIIAAQLAHAQIQLNDNQVQQLQHLQVQQVLDNVVRMESSVENNQNQSNEQNQLSENMQIVKDEKTLQNCKLISSAQFGLQDHKGNNLMDVRTADGSIVKISTNMQEQDLAKTLGVEMVQNMYKVNVDELNQLLAYHEVFGKMQGEITTSAPTIQNTNVVNLQQQQQQQQNNIALVTKDEQEPSTSTLPNDGSSPTVITGNHVCDLCGKMFQYRYQLIVHRRYHTERKPFTCQVCGKAFTNSQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTLCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETQHCCNVCSKPFTRKEHLINHMRSHTGERPFACAECGKSFPLKGNLLFHQRSHNKGANAERPFRCDLCSKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTVENGQNATTQQAAQVTQNNQTQTAVSVASLQIPQVGQNQQQQQQTSTANNIIAQSTHLPMHPPSSHPVVVPTANGNVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00167784;
- 90% Identity
- -
- 80% Identity
- -