Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375804.1:10629571-10639738[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00026 0.013 16.6 2.0 1 23 409 431 409 431 0.97

2 18 5.8e-05 0.0029 18.7 2.5 1 20 437 456 437 459 0.94

3 18 3.3e-05 0.0017 19.4 0.8 1 23 465 487 465 487 0.98

4 18 0.0001 0.0052 17.9 4.4 1 21 493 513 493 515 0.95

5 18 5.8e-05 0.0029 18.7 4.6 1 23 521 543 521 543 0.99

6 18 5.6e-05 0.0028 18.7 5.3 1 23 549 571 549 571 0.97

7 18 9.4e-06 0.00047 21.2 7.2 1 23 577 599 577 599 0.97

8 18 2.2e-07 1.1e-05 26.3 2.7 1 23 605 627 605 627 0.98

9 18 0.00016 0.008 17.3 6.7 1 23 633 655 633 655 0.97

10 18 9.3e-05 0.0047 18.0 5.8 1 23 661 683 661 683 0.97

11 18 7e-07 3.5e-05 24.7 2.9 1 23 689 711 689 711 0.98

12 18 7.4e-05 0.0037 18.3 8.0 1 23 717 739 717 739 0.98

13 18 6.2e-05 0.0031 18.6 9.1 1 23 745 767 745 767 0.98

14 18 3.7e-05 0.0019 19.3 7.7 1 23 773 795 773 795 0.98

15 18 2.4e-05 0.0012 19.9 7.1 1 23 801 823 801 823 0.97

16 18 0.00036 0.018 16.2 0.2 1 23 829 851 829 851 0.97

17 18 0.19 9.8 7.6 5.0 1 23 861 883 861 883 0.98

18 18 1.5e-06 7.7e-05 23.6 0.9 1 23 889 911 889 911 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00026	0.013	16.6	2.0	1	23	409	431	409	431	0.97
2	18	5.8e-05	0.0029	18.7	2.5	1	20	437	456	437	459	0.94
3	18	3.3e-05	0.0017	19.4	0.8	1	23	465	487	465	487	0.98
4	18	0.0001	0.0052	17.9	4.4	1	21	493	513	493	515	0.95
5	18	5.8e-05	0.0029	18.7	4.6	1	23	521	543	521	543	0.99
6	18	5.6e-05	0.0028	18.7	5.3	1	23	549	571	549	571	0.97
7	18	9.4e-06	0.00047	21.2	7.2	1	23	577	599	577	599	0.97
8	18	2.2e-07	1.1e-05	26.3	2.7	1	23	605	627	605	627	0.98
9	18	0.00016	0.008	17.3	6.7	1	23	633	655	633	655	0.97
10	18	9.3e-05	0.0047	18.0	5.8	1	23	661	683	661	683	0.97
11	18	7e-07	3.5e-05	24.7	2.9	1	23	689	711	689	711	0.98
12	18	7.4e-05	0.0037	18.3	8.0	1	23	717	739	717	739	0.98
13	18	6.2e-05	0.0031	18.6	9.1	1	23	745	767	745	767	0.98
14	18	3.7e-05	0.0019	19.3	7.7	1	23	773	795	773	795	0.98
15	18	2.4e-05	0.0012	19.9	7.1	1	23	801	823	801	823	0.97
16	18	0.00036	0.018	16.2	0.2	1	23	829	851	829	851	0.97
17	18	0.19	9.8	7.6	5.0	1	23	861	883	861	883	0.98
18	18	1.5e-06	7.7e-05	23.6	0.9	1	23	889	911	889	911	0.96

Sequence Information

Coding Sequence: ATGAATACCAATGATCATAATGCCCTCAATGGGTCCCATGGGCCCGAATCTTCAGAGGGCACAACGCAGAGACCACCACCTACAGCTGCAATTCCTACAGATTTAAGAGTTAATACAACAGCACTTAATGCTGTAGCCCTTAGCAGCGTAGCAAAGTATTGGGTTTTAACGAATTTATTGCCTGGACCAATCCCACAAGTTTCCGTCTATGGTTTACCAGGTTCCGGACGTAATGACAACCAAGGAAAAATTGTCCAGGAAGCAATGTTGGGTCAACATGCGGCAGCTGGTTTATTGCCAACTGATCCACTTCTTTTGCAGCAACACTCTCAAATCCCAGTTAGCATATCACAAGGTGTTACTAATTTGACTATACCAACCGGCAATATGCATTTGGAAAACAGTCATCAGAGCCATCAGAATCATGTATCGTTAGCAAGTCATCAACAAAATAATGGAATGTCAGTTGGCAATCAGAATCAAATGAATCGTGATATATCACACCAGCAGCAAAATCATGGAAATTCACAAAATATGGTGCAGGTTCAAGTGCAAGATAATCTTGTTTCGGTTATTGAAGATAGTAAAGATCAAAAGGATATAATAGCAGCACAGCTCGCACATGCACAAATACAGTTAGGCGATAATCCGCACTTGAACCACCAAGCTTTAACAGTACAACAGTTGCAGCATCTTCAAGTTCAGCAAGTTCTAGATAATGTTGTGCGTATGGAGAATGCAATTGATAATGGACAGAATCAGGCAAATAATGATCACAATCAACTTTCAGATAATTTACAAATAGTAAAAGACGAAAAGAATTTGCAAAATTGTAAATTATTATCGAATTCTCAATTTGGGTTACAAGATCATACAAAACCTAATAATTTAATGGATGTTCGTACGGCTGATGGAAGTATAGTTAAAATTTCTACCACAAACCTTCAAGAACAAGATTTGGCTAAAACTTTAGGCGTCGAAATGGTGCAAAATATGTATAAAGTAAATGTTGATGATTTGAATCAACTTTTGGCTTATCATGAAGTCTTTGGCAAACTTCAAGGTGAAATAGCCACAACAAGTCAAAACGTTGTACAAAATACGAACACCAATGTCAATCTTCAGCAAAATGCCAATAATATTTCTATAGTTACTAAAGAAGAACAAGATCCATCTACAAGTTCCTTACAGAATGATAATACAACTACGGTGATTACAGGGAATCAtgtctgtgatttatgtggaaaaattttccaatttcgttaccaattaatcgttcatagacgttaccataccgaaagaaaaccatttacatgtcaagtttgcggaaaagcttttacaaattcgcaagaattaactcgacacggaaagtgccatctagggggtagtatgtttacgtgcgctgtttgctttcatgtctttgcaaatgcggcgtcattagagagacatatgaaaagacattcgactgataaaccatataattgtactatttgtggaaaatcttttgcacggaaggaacatttggataatcatacaaggtgccatacgggtgaaacgccatatcgttgtcaatactgtgccaagacctttacaagaaaagaacacatggttaatcatgtccgcaaacacactggtgaaacaccgcatcgttgcgaaatttgtaaaaaatcgtttactcgaaaagaacattttatgaatcatgtaatgtggcatacaggagaaactccacatcactgtactatctgtggcaagaaatatactagaaaagagcatttagcaaatcatatgcgttctcatacgaacgatacaccattccgatgtgaaatttgtggtaaatcattcactcgcaaagaacattttacgaatcatattatgtggcatactggagaaacgcctcatcgttgtgatttttgttcgaaaacgtttactcgtaaagaacatttattgaatcatgtacgtcagcatactggagaatctcctcatcgatgcggattttgttcaaagtcgtttacgagaaaagaacatttaataaaccatgtacgtcaacatacaggcgaaacgccatttcggtgcaattattgtcctaaagcttttaccagaaaagatcatttagtaaatcacgtgcggcagcatacaggtgaatctccgcataagtgtactttttgtacgaaatcctttacgagaaaagaacatttaaataatcatgttcggcagcatactggagaatcaccacatcgatgccatttttgctcaaaatcgtttacacgaaaagagcatttaactaatcatgttaggattcatacaggagagtcacctcatcgttgtgaattttgtcaaaaaacatttacacgtaaggaacatttaacgaatcatttgcgccaacatacaggtgacactcaacactgttgcaatgtttgttcaaaaccatttacgcgcaaggaacatttaataaatcatatgagatctcatacaggtgaacggccttttgcttgtggtgaatgtggaaaatcgtttcctctcaaaggtaatttattattccaccagagatctcataataagggagctaatgcagaccgaccgttcagatgtgatctttgcgagaaagactttatgtgtaaaggtcacttggtgtcacatcgtagatctcacagtggtgaacgaccCCATGCATGTCCAGATTGTGGAAAAACATTTGTCGAAAAAGGTAACATGTTGAGACATCTACGCAAACATGCTACGGAAAATGGTGATGGTCAAACCATGTCAGCAAATCAAGTTCAGGCAGGTCAGGGTAATAATCAGCCACAAACGTCGGTAGCTAATTTGCAAATACCTCAAGTAAGTCAAACACAGCAAACGGCAGCTAGCAATATTGTTTCGCAAGCATCACATTTGCCAATGCATCCACCAACTAATCACCCTGTTGTCGTATCAACAGCGAATGGAAATGTCTTAGCTAGCTATTAG
Protein Sequence: MNTNDHNALNGSHGPESSEGTTQRPPPTAAIPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGSGRNDNQGKIVQEAMLGQHAAAGLLPTDPLLLQQHSQIPVSISQGVTNLTIPTGNMHLENSHQSHQNHVSLASHQQNNGMSVGNQNQMNRDISHQQQNHGNSQNMVQVQVQDNLVSVIEDSKDQKDIIAAQLAHAQIQLGDNPHLNHQALTVQQLQHLQVQQVLDNVVRMENAIDNGQNQANNDHNQLSDNLQIVKDEKNLQNCKLLSNSQFGLQDHTKPNNLMDVRTADGSIVKISTTNLQEQDLAKTLGVEMVQNMYKVNVDDLNQLLAYHEVFGKLQGEIATTSQNVVQNTNTNVNLQQNANNISIVTKEEQDPSTSSLQNDNTTTVITGNHVCDLCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNSQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCNYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGDTQHCCNVCSKPFTRKEHLINHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGANADRPFRCDLCEKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHATENGDGQTMSANQVQAGQGNNQPQTSVANLQIPQVSQTQQTAASNIVSQASHLPMHPPTNHPVVVSTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167784;
90% Identity: iTF_00415298;
80% Identity: -