Pder020572.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- -
- Assembly
- GCA_963942485.1
- Location
- OZ012632.1:4174596-4178285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00012 0.011 16.6 0.5 2 23 401 422 400 422 0.97 2 18 2.6e-05 0.0024 18.7 1.8 1 20 428 447 428 450 0.94 3 18 1.5e-05 0.0013 19.5 0.8 1 23 456 478 456 478 0.98 4 18 0.0015 0.14 13.1 4.3 1 21 484 504 484 506 0.95 5 18 2.6e-05 0.0023 18.7 4.6 1 23 512 534 512 534 0.99 6 18 2.1e-05 0.0019 19.0 4.8 1 23 540 562 540 562 0.97 7 18 4.1e-06 0.00038 21.2 7.2 1 23 568 590 568 590 0.97 8 18 9.5e-08 8.7e-06 26.3 2.7 1 23 596 618 596 618 0.98 9 18 7e-05 0.0064 17.3 6.7 1 23 624 646 624 646 0.97 10 18 4.1e-05 0.0037 18.1 5.8 1 23 652 674 652 674 0.97 11 18 2.3e-06 0.00021 22.0 3.0 1 23 680 702 680 702 0.98 12 18 3.2e-05 0.003 18.4 8.0 1 23 708 730 708 730 0.98 13 18 2.7e-05 0.0025 18.6 9.1 1 23 736 758 736 758 0.98 14 18 1.6e-05 0.0015 19.3 7.7 1 23 764 786 764 786 0.98 15 18 1.8e-05 0.0016 19.2 7.1 1 23 792 814 792 814 0.97 16 18 0.00016 0.015 16.2 0.2 1 23 820 842 820 842 0.97 17 18 0.085 7.8 7.6 5.0 1 23 852 874 852 874 0.98 18 18 1.3e-07 1.2e-05 25.9 0.3 1 23 880 902 880 902 0.98
Sequence Information
- Coding Sequence
- ATGAATTCGGATAATCAGAATCCTCTGAGTGGGGCCCACACTTCTAACTCAGTGGGTACTACACAGCGCCCTCCACCGACCACCACGACGGTTCCAACAGATCTTCGTGTAAACACCACAGCATTGAATGCTGTTGCTTTGAGCAGCGTGGCGAAGTACTGGGTGTTGACAAATCTATTGCCGGGGCCCATACCGCAGGTTTCTGTGTATGGTTTACCCGGCACAGGACGTACTGATAACCAGGGGAAAATATCTCAAGATGGAATTCTCGGACAACATGCTGGGCTACTCCCGGGGGATCCGATGTTGTTACAGCAACACCCCCAGATTCCAGTTAGTATTGCCACGTCGCAAGGTGGGAATTTAACTTTGTCGGGAGCGGGGTTGCATTTGGATAACACTATTGGAAACCACCAGCATCCCCCCGATGGAATCAACCAAAACCAGTTAAATCGTGATatGTCCCATCAACAACAAAACCACAATAACCAGCAAAATATGGTCCAAGTTCAAGTGCAAGACAACATGGTTTCCGTGATCGAAGACAAGGACCAAAAGGATAATATCGCTGCGCAACTCGCCCAGCTCAGCGATAATCATCACTTAAACCAACAGAGTCTCACTGTGCAACAATTGCAACATTTACAAGTGCAACAAGTTCTGGATAACGtgGTTCGCATGGAAAGTTCAGTGGAAAACAACCAGAATCAATCGAATAACGAACATGAATCTGTAGGGGATTCTTTGCATATTGTTAAAGATGAAAAGTCGTTGCagaattgtaaattattaagcGGGGCGCAGTTTGGTTTACATGATTTGAAGGCTAATGTAATGGATGTGAGGACTCCGGATGGGAGTATAGTAAAAATCCAGACTAATCTTCAGGAACAAGAACTAGCAAAAACTTTGGGGGTTGAAATGGTCCAAAGCATGTACAAGGTTAATGTAGACGATTTGAACCAACTGTTAGCTTATCATGAAGTGTTTGGGAAGCTTCAAGGGGAGATCACTAATACTAATAACACACAGAACATCGGACAAAACAACttgcaacaacaacaacaaccgcAGCAgcagcaacaacaacaaccCCAACAGCAACCGAACCAAGGCGTTGCTATTACTAAGGACGAACAAGAGGCGTCGACGAGTACTCTTACGGAAAACGGAGGCCCCACAGTGATCACCGGCAATCAAGTGTGCGACCTCTGTGGGAAAATCTTCCAATTCCGCTATCAGCTCATCGTCCATCGTCGCTACCACGTCGAACGCAAACCCTTCACTTGTCAAGTTTGCGGAAAAGCCTTCACCAACGCCCAAGAACTAACCCGCCATGGTAAATGCCATCTAGGTGGCAGTATGTTCACGTGTGCTGTGTGTTTTCATGTGTTCGCTAATGCTGCTTCGTTGGAGCGCCACATGAAGCGCCATTCGACTGACAAACCGTATAATTGTACGATTTGTGCCAAGTCGTTTGCGCGTAAAGAACATTTAGATAATCACACTAGGTGCCATACGGGGGAGACGCCTTATAGGTGTCAGTACTGTGCCAAGACTTTTACGAGGAAGGAGCATATGGTGAATCATGTGCGGAAGCATACGGGGGAAACACCGCATCGGTGTGAGATTTGTCAAAAGTCTTTTACGAGGAAGGAGCATTTTATGAATCATGTGATGTGGCATACGGGGGAGACGCCGCATCATTGTACGATTTGTGGGAAGAAGTATACGAGGAAGGAGCATTTGGCGAATCATATGCGGTCGCATACGAATGACACGCCTTTTAGATGTGAAATTTGCGGCAAGTCCTTCACCCGCAAAGAGCACTTCACGAACCACATCATGTGGCACACAGGGGAAACCCCGCATCGCTGTGATTTCTGTTCGAAAACCTTCACACGTAAGGAGCATCTCTTAAACCACGTACGCCAACACACAGGCGAGTCTCCCCATCGTTGTGGATTCTGCTCCAAGTCCTTCACGCGTAAAGAACACCTTATCAACCATGTACGTCAGCACACTGGCGAAACCCCCTTCCGATGTAGTTTTTGCCCCAAAGCCTTCACCCGGAAAGATCATCTGGTGAACCATGTGAGACAACACACAGGCGAATCACCCCACAAGTGTACTTTTTGTACAAAGTCGTTCACACGGAAGGAACATTTGAATAACCACGTGCGTCAGCATACAGGCGAGTCTCCTCATAGGTGTCATTTTTGCTCCAAATCGTTCACTAGGAAGGAGCACCTAACGAATCATGTGAGGATCCATACGGGCGAATCACCACATCGTTGCGAGTTTTGCCAGAAGACTTTCACGCGAAAAGAGCATTTGACGAATCATTTACGTCAGCATACCGGGGAAACTCCGCATTGTTGCAATGTTTGTTCTAAGCCTTTTACCAGGAAAGAACACCTGGTTAATCACATGAGATCGCATACAGGAGAGCGACCTTTTGCTTGTGGCGAGTGCGGGAAGAGTTTCCCATTGAAAGGCAATTTGTTGTTCCATCAGAGGTCCCACAACAAAGGCGCGGCAGCTGAACGACCTTTTCGTTGTGATCTATGTGAGAAGGACTTCATGTGCAAAGGGCATTTGGTGTCGCATCGACGGTCCCATAGTGGAGAGAGACCATACGCTTGTCCTGATTGTGGGAAGACGTTCGTTGAAAAGGGGAACATGCTGCGGCATATGAAGAAGCATGTTGCGGAAAACGGTGTGGCTAATGCACATCCCCCGCAAACTACAACGGCAAATTTGCAGATACCGCAAGTTACTCAAACGCAGCAACAGAGTACTAGTAATATTGTTACGCAAAATGCGCAAATGTCAATGCACCCACCGCCCAATAGCCACCCAGTTGTTGTGCCTACTGCTAATGGCAATGTTTTAGCTACTTACTAG
- Protein Sequence
- MNSDNQNPLSGAHTSNSVGTTQRPPPTTTTVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGTGRTDNQGKISQDGILGQHAGLLPGDPMLLQQHPQIPVSIATSQGGNLTLSGAGLHLDNTIGNHQHPPDGINQNQLNRDMSHQQQNHNNQQNMVQVQVQDNMVSVIEDKDQKDNIAAQLAQLSDNHHLNQQSLTVQQLQHLQVQQVLDNVVRMESSVENNQNQSNNEHESVGDSLHIVKDEKSLQNCKLLSGAQFGLHDLKANVMDVRTPDGSIVKIQTNLQEQELAKTLGVEMVQSMYKVNVDDLNQLLAYHEVFGKLQGEITNTNNTQNIGQNNLQQQQQPQQQQQQQPQQQPNQGVAITKDEQEASTSTLTENGGPTVITGNQVCDLCGKIFQFRYQLIVHRRYHVERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTICAKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICQKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCSFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLVNHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCEKDFMCKGHLVSHRRSHSGERPYACPDCGKTFVEKGNMLRHMKKHVAENGVANAHPPQTTTANLQIPQVTQTQQQSTSNIVTQNAQMSMHPPPNSHPVVVPTANGNVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00167784;
- 90% Identity
- -
- 80% Identity
- -