Basic Information

Insect: Aphis craccivora
Gene Symbol: JARID2
Assembly: GCA_009835225.1
Location: VUJU01001728.1:5858-20423[-]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.6 1.3e+04 -2.7 0.0 21 67 972 1018 965 1029 0.73

2 3 1.7e-20 6.5e-17 62.4 0.0 8 89 1529 1608 1523 1608 0.92

3 3 6.1 2.3e+04 -3.4 0.0 49 62 1622 1633 1619 1642 0.75

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.6	1.3e+04	-2.7	21	67	972	1018	965	1029	0.73
2	3	1.7e-20	6.5e-17	62.4	8	89	1529	1608	1523	1608	0.92
3	3	6.1	2.3e+04	-3.4	49	62	1622	1633	1619	1642	0.75

Sequence Information

Coding Sequence: ATGTCTTCGAATGGGTCGGATGCAAAGAAACGCAAACTGCTGAACAATGAAGAAGCTATTCTTGAGTCGAGTACTAAaaaAATCAAGGTACAAGCACAGCGTAAATTTGCCCAAAATGCTGTTTTACCCACCAGCACTGCCCAAAAACCTATTCAAACTCCAGTGGTGCCTAATAATGTGACAAAACCACCAATTAAGCGGCCAAATACTGAAGACTTTCTTACCTTCCTTTGTTTTAgagGTACTAGTTTATTACCTCCACGACTAGATTTCTTCAATAAACCTCAACGCTCTCTATTGGCTCAAGAGATTGCTGCtggaaaaaaaagaaGAAAAAGCACTCCTATACTGCCAGTAACTAATGCAAATAATCCCTATCATGTAAATAGTGTAAATAATGAACCAATTGaacgtaaaaatattagtcaGTTATCACAAACCAAGTTTCCATTATCTAAACTAGGACAGAAAGttaTGGGTCGAAAGTTGGTAAGATCCAGTTCAAGGTATACTGTTAGACAAGAATCTCTTACATTACGTCAATTAGCCCTTCGTCAtgttccaaaaataaaaaaacccaccttaaaagttattaaACCTTTagcaaaagaaaatattaaaaaaaaaccggagAAAAATGGAAAACAAGTATCATTAGATGGTAAGCAAATACAAAAGTTGAAAGGCCGTATAACTCGATCAAATTCTTTACCAAGTATATTTAGTCCTGCGGTAAATCAACTTCGagatgataAAGGAAAATGGTGTAAAGGGAATAGTAGTAAACCTTCTTCAAAAGCATCTGATGATTCAAAAGATGTTGAAGAAGAAAGACCATCGAGAAAAAAGACTGCATCAAACAATTTAGATCATAGAAGTAATAGTCTGGGTAACATGAAACGAAAGACTAGTATTGTTAAATGTAAAGtggcaaataaaaataacagaaaaactAGAAGCTTAGCAAGTAAATCTAAGAGCAGTGACCAAGATAATTATGTTGTTCTTGATAAGAAGGGTGATACAAATTTAAAGACTGTATCGAAGAGTAACAAAGCAAATAGTTTAATTGAAACAAAACCAACAGTAGATGTGAAAAGAAGAACATCTTCAGTggataatatgaaaacaacTCGAGAGAGCAAagatataattagttcAACTCGTTCAAGGCCCCCTAGAAGAACTAAAGAAGCTGCTACTCTATTTATGGAAATGTTACGAAAAGACATGCGGTGCCCTGATGAGCAAGAAGAAGATGATACATCATCTGTTGAGAGTTTTCCAGACCTTCCTAATACACGAATAAATGAACAACGTGAACGTGAGTTGAAAGTGTTTTCCAAGCAAAACAAAATGGAAAAACATCAAGAACAAAAGTTGTCTGAAAAAAAAGATGATAAACCATTGTCTGATAGcaaaaagacaaaaataattgacaaaaaGAAGGTagaaaagttcaaaaaaaaaattgagttgaATAATACTCTTGATAAGAAAAAGACAAAAGAAGTTATTGAGTCGATTAGCTTAACTGAAAACAGTGGAGCAGCATCGTTTAAAAGGAATCTGAGGCCTCGACGCTCTTCTACCATGTTAGATGATTATATCATGACTGATTCGGATGAGGACGACATGAAATGTAAACCTGTTATAGAATTGACAAGATGTGAAGCTCCTATATCGTCGAACAAATTGACGACTGAGGCTGGGAACTCAAAATCTCAAAAGTGTAAGTTAAGTACTGACgaatctgttaaaaaaaatcttaaaattaataagactgacttaaaacttaaaaaagatTTGAATAAAGATTCCGAAGTTAAAAAAGGTCTTTCTGAAACTAAgtcaaaaagtattttaataaaacgtgACAAAGAGCTAGAAatcaagaataataaaaatgctgctgtcgataaaataaatgaaaaatcgtCAGAAAATAAGACTGAAATTGTAGTAATTACTAAAGAACCAAAAACTACCGGCAATGGTTCAAAAAATGCCGGAAAAAAAGTGCCACCGCCTAAGCAGCAGtcaacaaaaaatgaaaacgctTTGAACAAGAAAAAGTCTAATttagatttgtataataataacaataaaaaaaaacggtctACGTTATCATCGTCAGTGACGTCTTCGTCGTCTTCCATGTTTAATAGTATTACTAGTCAGACAAAAGAAGAGCTTTTGGAACGTATGGCCAAAAATTTTGATGCAACACCTACCGCTTATGAAGGTGCCGATAAAgtaatattgacaacaatagCGGAAAGCATCAAAAGCAcaactatgaaaaaatatacgcAAAATAATGCAAAGGAAAAACGTGTTGAAAGCAATGTGGTAGAAAAAAATGTGGAGAGTGGTAGTATTatggtagaaaaaaaaacagctaaTGAAGAACattcagtaaatattaaattagtgaaAAACAAACAAGAACTAGAAAAAGTTTCGAAAACAGAAAACATAGTTGCCGTGCCAAAAGAAGAAAACAACATTGTGACTGCTGAAAAAGTAGAAAACGTGGATATAGCCATCGATAAGGCAGAGAAAACTGAGTCCATGGTAGTGCCATTGAACAAAGTAGAAAAAGTGGAAAACATGGTGTTCCAAACCATAGCAAAAGACCTATTCTTGGGACAGCAGAAAGAGATCAAGATCACCATACCTGAATACTTCTCTGGTAAAAATTTCCAGTTGGACAATAGGTTTAAAGAAGATGATGGGCTTTCTGTGTTATCCGAGATTTGTAGTGCCTTGCCCAGATTTAATGAACCTTTCGTATCTAGTAGTCATTTATTGAACAAGCTGCCGACACCCGAGGACAACAGTTTTGTGAAGTATGTTCCGCCAACTGTCGGtgaagatgaaaaaaaagacGATAAGCCTCCATTGACGACATCGACTCCGCCATCATTTGAAAGTCGCACCGTCAAAATCGTAAATTTGGCGCGCGGCAACAGCTCGTCTGAAACAAacgataaaaatgatttagctGCGTCTTGGAAACGGGCGTTCAAAAACGTCAAATTGCCCAAAAATGGAATCACCTCTGCCGCTGTTTCGGTCGGTAGCAACTTGATTACTTGGACAAAAAAGCAACAAACCGACAATCAAGCAACACCATCAAAGACATACGCTGATTCTATAGATGGTGGCACAAAAGAAATAGTTTCCAATAGTAATACGATGAAAAACACTCATCAGTCATCACTGGTAAATGGTAACGTGGAAAATAAATCTGAATCTTCTTATAAATGCCAAAAAACTTGTTGTGGTGAAACTAAATCCATGGAAATGTTGGACGGCAAAAAGACTGCGTCAACATCAGCCGCTAACAATGCGTCCTATCTGGCCAAAACGACCATACTAAACAGTACGAAGTacgatttgaaatttgaaaaacgtTGTTCTTCGGTTACAACAGCGACCACTACAGCGCCTATCAGTGTAGAAAAACAACATCAAATCCGCAAAGACGTCATGGGTGACGTGTCGTCTTCTGATGATCAGAGTCCAGAAAAAAAGATATTCCATCAGAGGCGGCTATCTACTACCCAGTCTTGTAGCGGAAATAGTTCTGATGCCTTTTCACCCGATAACGAGACGAGTGTTTACGCTTTTCAGCCTGATTTACCAGTAGCCAGCACTCCTTTTCGTCGGAATAAACCACAATCGCCCGCAAAGTCCAGGACGGTTTCGCCCAACACATCAATCGCTGTGAGTATTGAAAATGATTCTATGGAAGAAAAATCTCATCAGTCCACCGTGTCATCAACTACAACAGATGTTGATAGCGAGGAAGGACGGCTTTTTTACATTCCGTTACCAGCCGGAGTTCGGGCACAGCCGATGATTCAAGGCGTGACAGTCAAACTGGGCACAGAAGGACCAcagaaaaaattagtaatgagCGCTAAGCTGGTAACCAAACCCCCTGCGTCTACGATACCAGTCAGTTCCATATCGCCAAAACCTGAGCGGAAAATCAAACCGTTGTGCACAACCAAAATTACCAACAGCACCACCCCTGTCGGCACTGTGCAACCAACTACGAGAACTGTTCAGCCCCCAAAATGTACCCCTTCAACTTCAAAACAAGCGTTACCATTACCTCCGCAGCCACAAATCTCGGAAATGAAAGACGATAAGAAACGATTACAACAAATTACTACAACTACTAATTCTACTACTACTGCCATTACTTCTGCTAAGGAATCGAAAAAATCGTCTTCCGTTTCCGCCGCTAATAacaagaaacaaaaaaaGACTGAAAAACAAGTTAAGAGGAAGTCCAGCGAGAAAGTTGCTTTGAAAAAGAAATCAGCAAAAGAATGTTCTGACATGTTGGATGCTCCGACATTTTATCCATCCGAAGAAGACTTTAAGGATCctttagaatattttgaaatcataAAACCCGTTGCTCAAAAATACGGCATATGCAGAGTCGTGCCACCACCTAGTTTTAAgCCGGAATGCAAAGTCAGCGACGACATGCGTTTTACGGCATACAATCAGTATGTGCATAAGATGATGAATCGATGGGGCCCAAATGTTCGTGAAATGATAGCCATGAAAAAGTATCTAGAAACACAGTCGATAGTCTTGTCCAACCCACCGCTGATTGGTGGCATGGAATTGGATTTACCCAAGCTATACCATACGGTACAGGAGCTCGGCGGACTCAAAGAAGTAATAGAGCTGGACAAGTGGTGTCGTGTTGCCGACTTGATGAAGATCCCCAAGAGTGCTCAAGACCGCGTCACTAAACTCGACGACATTTACTGCAAATATCTATTGCCGTACGACACACTCTCACATGATGAACGTCAAAAATTGATAGCAGAAGTGGATAAAGAGTGGaaacaaatatgcaaaaaaggCGACACTGATGACGAGCTGTATGAAGACGTTAATGATTGTATAACAAAGGGTCGAAGTATTCCATTGAGCGCTTATTATCGGGTTGCACGCAACACTATTGCCATGTGGTTCAAAgaacagcagcaacagcaaccGGCGGGTGGCCACTCGTCTTCTACATCAGCTGCGGCCCCGGCGGTGGTCCGCGCTGAAGATGTTGAGTCGCTTTATTGGAAAAATGTGCAGGAAAGGAAGAACCATATTTGTGTGCTGTCTGGGTCAATCGACTCAGGCACAGAGGGTTACGGATTCCCAACGACCAAGACAGCCACTTTCACTAAACATCCGTGGAATCTTAAAGTGCTGACTAACAATCCGGTGTCTGTGCTCAAGTCTCTGGGCCCGGTGATGGGCATGACTGTACCCACCATACACATGGGCATGGTATTCTCAGCATGCTGTTGGTACAAGGACCCGCACGGTCTGCCATGGATCGAGTATCTGCATACAGGTGCTGACAAGGTGTGGTATGGCGTGCCGTCTGACCAAAGTGACCGGTTTCGAGCAGCCATGAAACGTTTGCTGCCGCGGGCTGTAGCTGAAGGTCAAAATCATCACTCATGGTTGGCTGCAGACAGTGGTATGGTGCCTCCTAGCCGTTTGCTCGAGCATGGTGTCACACTTACCAGAACTGTGCAGAACCCAGGCCAATTTCTCATTGTTATGCCACGAGCTTATACGTGCAATGTGTCCACTGGTTATGTTATATCCGAGAGCGTATACTTCACACAGCCTGGTTGGCTTGACGGTGCCGAGAAGATTTTccagGACTTACAGAAAAATTGTGAACCAGCTGCTTTTTCGTTTGAAAAGTTATTGATTAACATGTCCACGGATTCACGTACACctcaaaatatactaaaacagTTGTTAAATATGTTAAGCAATATGAGAGACTGTGAAGTGGCGCTCCGAAGTCAACTGGTAGAGGATTTAGGCCTAAAGGCTTCTGAACGCATTAAGCCTACAACGTCCAAATCAAATGAGCATAATGATGATTATGAGTGTGATGTGTGTCATTCAATTCTTTACATATCAATGgTGAACAATTCGCATGAAGACTGTGACTATTGTCTTAGACATGGCATTGAGATTTTATCGAAAAAACACAACCAACTTAAGTATTGCAAGTTTTTATACACTTTTGACGAGacTGATTTGGATATGATATTAGTGAAACTTCGCGAAAGGattgattcaaaaaaaaagaaaacatctACCAAAAGTTGA
Protein Sequence: MSSNGSDAKKRKLLNNEEAILESSTKKIKVQAQRKFAQNAVLPTSTAQKPIQTPVVPNNVTKPPIKRPNTEDFLTFLCFRGTSLLPPRLDFFNKPQRSLLAQEIAAGKKRRKSTPILPVTNANNPYHVNSVNNEPIERKNISQLSQTKFPLSKLGQKVMGRKLVRSSSRYTVRQESLTLRQLALRHVPKIKKPTLKVIKPLAKENIKKKPEKNGKQVSLDGKQIQKLKGRITRSNSLPSIFSPAVNQLRDDKGKWCKGNSSKPSSKASDDSKDVEEERPSRKKTASNNLDHRSNSLGNMKRKTSIVKCKVANKNNRKTRSLASKSKSSDQDNYVVLDKKGDTNLKTVSKSNKANSLIETKPTVDVKRRTSSVDNMKTTRESKDIISSTRSRPPRRTKEAATLFMEMLRKDMRCPDEQEEDDTSSVESFPDLPNTRINEQRERELKVFSKQNKMEKHQEQKLSEKKDDKPLSDSKKTKIIDKKKVEKFKKKIELNNTLDKKKTKEVIESISLTENSGAASFKRNLRPRRSSTMLDDYIMTDSDEDDMKCKPVIELTRCEAPISSNKLTTEAGNSKSQKCKLSTDESVKKNLKINKTDLKLKKDLNKDSEVKKGLSETKSKSILIKRDKELEIKNNKNAAVDKINEKSSENKTEIVVITKEPKTTGNGSKNAGKKVPPPKQQSTKNENALNKKKSNLDLYNNNNKKKRSTLSSSVTSSSSSMFNSITSQTKEELLERMAKNFDATPTAYEGADKVILTTIAESIKSTTMKKYTQNNAKEKRVESNVVEKNVESGSIMVEKKTANEEHSVNIKLVKNKQELEKVSKTENIVAVPKEENNIVTAEKVENVDIAIDKAEKTESMVVPLNKVEKVENMVFQTIAKDLFLGQQKEIKITIPEYFSGKNFQLDNRFKEDDGLSVLSEICSALPRFNEPFVSSSHLLNKLPTPEDNSFVKYVPPTVGEDEKKDDKPPLTTSTPPSFESRTVKIVNLARGNSSSETNDKNDLAASWKRAFKNVKLPKNGITSAAVSVGSNLITWTKKQQTDNQATPSKTYADSIDGGTKEIVSNSNTMKNTHQSSLVNGNVENKSESSYKCQKTCCGETKSMEMLDGKKTASTSAANNASYLAKTTILNSTKYDLKFEKRCSSVTTATTTAPISVEKQHQIRKDVMGDVSSSDDQSPEKKIFHQRRLSTTQSCSGNSSDAFSPDNETSVYAFQPDLPVASTPFRRNKPQSPAKSRTVSPNTSIAVSIENDSMEEKSHQSTVSSTTTDVDSEEGRLFYIPLPAGVRAQPMIQGVTVKLGTEGPQKKLVMSAKLVTKPPASTIPVSSISPKPERKIKPLCTTKITNSTTPVGTVQPTTRTVQPPKCTPSTSKQALPLPPQPQISEMKDDKKRLQQITTTTNSTTTAITSAKESKKSSSVSAANNKKQKKTEKQVKRKSSEKVALKKKSAKECSDMLDAPTFYPSEEDFKDPLEYFEIIKPVAQKYGICRVVPPPSFKPECKVSDDMRFTAYNQYVHKMMNRWGPNVREMIAMKKYLETQSIVLSNPPLIGGMELDLPKLYHTVQELGGLKEVIELDKWCRVADLMKIPKSAQDRVTKLDDIYCKYLLPYDTLSHDERQKLIAEVDKEWKQICKKGDTDDELYEDVNDCITKGRSIPLSAYYRVARNTIAMWFKEQQQQQPAGGHSSSTSAAAPAVVRAEDVESLYWKNVQERKNHICVLSGSIDSGTEGYGFPTTKTATFTKHPWNLKVLTNNPVSVLKSLGPVMGMTVPTIHMGMVFSACCWYKDPHGLPWIEYLHTGADKVWYGVPSDQSDRFRAAMKRLLPRAVAEGQNHHSWLAADSGMVPPSRLLEHGVTLTRTVQNPGQFLIVMPRAYTCNVSTGYVISESVYFTQPGWLDGAEKIFQDLQKNCEPAAFSFEKLLINMSTDSRTPQNILKQLLNMLSNMRDCEVALRSQLVEDLGLKASERIKPTTSKSNEHNDDYECDVCHSILYISMVNNSHEDCDYCLRHGIEILSKKHNQLKYCKFLYTFDETDLDMILVKLRERIDSKKKKTSTKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01304641; iTF_00972837; iTF_00018798; iTF_01328398; iTF_01303971; iTF_01305330; iTF_01037530; iTF_01032667; iTF_01167388; iTF_00135101; iTF_00135943; iTF_00940158; iTF_00184392;
90% Identity: iTF_00972837;
80% Identity: -