Rmai003425.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- JARID2
- Assembly
- GCA_003676215.3
- Location
- NC:29432344-29450662[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.074 1.1e+02 2.7 0.0 21 68 963 1010 943 1024 0.81 2 3 1.7e-20 2.5e-17 62.4 0.0 8 89 1523 1602 1517 1602 0.92 3 3 4.7 6.8e+03 -3.1 0.0 49 63 1616 1628 1612 1643 0.75
Sequence Information
- Coding Sequence
- ATGTCTTCGAATGGGTCGGATGCAAAGAAACGCAAACTGCTGAACAATGAAGAAGCTATTCTTGAGTCTAGTACTAAAAAAATCAAGGTACAAGCACAGCGTAAATTTGCCCAAAATGCTGTGATACCCACCAGCACTGCACAAAAACCTATTCAGACTCCAGTAGTGCCTAATAATGTGACAAAACCACCAATTAAGAGGCCAAATACTGAAGACTTCCTTACCTTCCTTTGTTTTAGagGTACAAGTTTATTACCTCCACGACTAGATTTCTTCAATAAACCTCAACGCTCTCTATCGGCACAAGAGATTGCTGCtggaaaaaaaagaAGAAAAAGCACTCCTATACTGCCAGTAACTAATGCAAATAATCCATATAGTGTAAATAGTGTAAATAATGAATCAATTGAACGAAAAAACATTAGTCAGTTATCACAGACCAAATTTCCATTATCTAAACTAGGACAGAAAGTTATGGGTCGAAAGTTGGTAAGATCCAGTTCAAGATATACTGTTAGACAAGAAGCTCTCACATTACGTCAATTAGCTCTTCGTCATgttccaaaattaaaaaaatccacCTCAAAAGTTGTTAAACCTttagtaaaagaaaataaaaaaaaaactgagaaAAATGGAAAACAAGTATCATTAGACGGTAAGCAAATACAAAAGTTGAAAGGCCGTATAACTCGATCAAATTCTTTACCAAGTATATTTTGTCCTGCTGTAAATCAACTTCgagatgatAAAGGGAAATGGTGTAAAGGGAGTTCTAGTAAACCTTCTTCAAAAGCATCTGATGACTCAAAAGATGTTGAAGAAGAAAGACCATCGAGAAAAAAGACTGCATCAAACAATTTAGATCATAGAAGTAATAGTCTGGGTAACATGAAACGAAAGACTAGTATTGTTAAATGTAAAGtggcaaataaaaataacagaaaaacTAGAAGTTTAGCGAGTAAATCTAAGAGCAGCGACCGAGATAATTATGTTGTTCCTGATAAGAAGGGTGATAAGAATTTGAAGACTGTATCCAAGAGTAACAAAGCAAACAGTTTAATTGAAACAAAACCAACAATAGACGTGAAAAGAAGGACATCTTCAGTGGATAATATGAAAACAACTCGTGAGAGTAAAGACATACTTAAttcaACCCGTTCAAGGCCCCCTAGGAGAACTAAAGAAGCTGCTACTTTATTTATGGAAATGTTACGAAAAGATATGCGGTGCCCTGATGAGCAAGAAGAAGATGATACATCATCTGTTGAGAGTTTTCCTGATCTTCCCAATACACGAATaaatgaacAACGCGAACGTGAGTTGAAAGTGTTTTCCAAGCAAAACAAAATGGAAAAACATCAAGAAGAACATAAATTATCTGAAAAAAGagatgataaatcattgtctGAAAGTAAAAAGACAAAATTAATTGACAAGAAGAAAGTagaaaagttgaaaaaaaagtttgaagaGAATAATACTCTGGAAAAGAAAAAGACAAAAGAAGTTATAGAGTCGATTAACTTTACTGAAAACAGTGGAGCTGTGTCATTTAAAAGGAATCTGAGGCCTCGACGCTCTTCTACCATGTTagatgattatattatgactgATTCGGATGAGGACGATATGAAATGTAAATCCGTTGTTGAGGTGACAAAATGCGAAGCTCCTAAATTGTCGAATAAAGTGACAATTATGGCAGGAAACTCAAAATCTCAAAAGTGTAAGCTAGGTACTGACGaatctgttaaaaaaaatcttaaaattaataagactGACTTAAAACCGAAAAAAGATTTGAATAAAGATTCTGAAGTTAAAAAAAGTCTTTCTGAAACTAAgtcaaaaagtattttattaaaacgtgACAAAGAGCTAGAAatcaagaataataaaaatggtaccgtcgataaaaaaaatgaaaaatcgtCAAAAAATAAgactgaaattttaataattactaaagaaCCAAAAACTACCGGCAGTGGTTCAAAAAATGCCGGAAAAAAAGTGCCACCTCCTAAGCAGCAGtcaacaaaaaatgaaaacgcTTTGAACAAGAAAAAATCCAATTTAGatctgtacaataataatgataaaaaaaaacgatctaCATCATCGTCTTCGGTGACGTCTTCGTCGTCTTCCATGTTTAGCGGTATTACTAGTCAAACGAAAGAAGAGCTTTTGGAACGTATGGCCGAAAATTTTGATGCCACATCTACCGCTTGCGAGGGTGCCGATAAAGCAATGCTGTCAAACATAGCGGAAAGCATCAACAGCgcaactatgaaaaaaaatgcacaaAGCAATGCGAAGGAAAAACGTGTAGATAGCAGTatggtagaaaaaaatatgcagaGTGGTAGTATTGTTGCGGAAAAAAAAGTAGCCAACGAAGTGAATTCAGTAAAGAATAAACAAGAGTTagaaaaagtttcaaaaacgGAAAACTTAGTTGCAGTTCCAAAAGAAGAAAATATCATCGTGACCACCGAAAAAGTAGAAAACGTGGTTATGGTTGTCGACAAGGTAGAGAAAACGGAGTCTGTGGTAGTGCCATTGAATAAAGTAGAAAAAGTAGAAAACATGGTGTTCCAGACCATAGCTAAAGACCTATTCTTGGGGCAGCAAAAAGAGATCAAGATCACCATACCCGAATACTTCTCCGGTAAAAACTTCCAGTTGGACAACAGGTTTAAACAAGACGATGGGCTTTCAGTGTTATCTGAAATTTGTAGCGCCCTGCCCAGATTTAATGAACCTTTCGTGTCTAGTAGTCAGTTGTTAAACAAGATGCCAACAGCCAGTGACAGCAGTTTTGTGAAGTATGTTCCGCCAACCATCAGTGAAGACGAAAAGCCTCCGGTGCCAACATTGACGCCGCCGTCGTTTGAAAGCCGCACCGTCAAAATCGTAAATTTGGCGCGCGGCAGCAGCTCGTCCGGGACAAACGACAAAAATGATTTGGCTGCGTCTTGGAAACGGGCGTTCAAAAACGTCAAATTGCCGAAAAATGGAATCGCCTCTGCCGCCGTTTCGGTCGGTAACAACTTGATTGCTTGGACGAAAAAGAAACAAAACGACAATCAAACCCCACCATCAAAGACATACGCTGATGGTATAGATGTTGGCACAAAAGATATAGTTTCTAATAgtaatttgatgaaaaacacTCTCCAATCATCATCACTGATGAATGGTACTACGGAAAAGAAATCTGAACCTTCATATAAATGCCAAAAGACTTGTTGCGGTGAAACAAAATCCATGGAAATTTTGGACGGCAAAAGGACGATGTCAACAACAGCCACCAACAATGCGTCCTATCTGGCCAAGACGACCATACTAAACAGTACGAAGTacgatttgaaatttgaaaaacgtTCATCATCGGCTACAACAGCGACTACTGCAGCGCCCATCACCGtcgaaaaacaacaacaaatccGCAAAGACATCGTAGGTGACGTTTCGTCTTCGGACGATCAGAGTCCGGAGAAGAAGATATTCCACCAACGGCGGCTGTCTACCACCCAGTCGTGTAGCGGAAATAGTTCCGACGCATTTTCACCCGATAACGAGACGAGTGTTTATGCTTTCCAGCCCGATTTGCCGGTTGCCAGCACTCCTTTTCGTCGGAACAAACCACAATCACCTGCCAAGTCCAGGACGGTTTCACCCAACACGTCAATCgctGTGAGTATTGAAAATGATTCTATGGAAGAAAAATCCCATCAGTCCACCGTATCATCAACGACAACGGATGTTGATAGCGAGGAAGGACGGCTTTTTTACATTCCATTACCGGCCGGTGTTCGGGCACAGCCGATGATTCAAGGCGTCACGGTAAAGCTGGGTACAGAAGGACCACAGAAAAAATTGGTGATGAGCGCTAAGCTAGTAACCAAACCTCCTGCTTCTACGATACCAGTCAGTTCCATATCGCCAAAACCTGAGCGGAAAATCAAACCGCTGTGCACGACCAAAATTACCAACAGCACTACCCCCGTTGGCACCGTGCAACCAACTACTAGAACTGTTCAGCCCCCTAAATGTACCCCCTCAACTTCAAAACAAGCGTTACCATTACTGCCACAGCCGCAAATGCCGGAAACGAAAGACGATAAGAAACGGTTACAACAAATCACTACAACTACTAATTCTACTACTACTGCCATTACTTCTGCTAAGGAATCGAAAAAATCGTCATCCGTATCCGTCACTAACaacaagaaacaaaaaaagACTGAAAAACAAGTTAACAATAAGAGGAAGTCCAGCGAAAAAGTAGCTTTGAAGAAGAAATCGTCTAAAGAATATTCCGACATGTTGGATGCGCCGACGTTTTATCCTTCCGAAGAAGACTTTAAGGATCctttagaatattttgaaataatcaaaCCCGTTGCTCAAAAATACGGCATATGCAGAGTCGTGCCGCCACCTAGTTTTAAGCCGGAATGTAAAGTCAGCGACGACATGCGTTTCACTGCATACAACCAATATGTGCATAAGATGATGAACCGTTGGGGCCCAAACGTCCGCGAAATGATAGCCATGAAAAAGTATCTGGAAACACAGTCAATTGTCTTGTCCAACCCTCCGCTAATTGGTGGCATGGAACTGGATTTACCTAAGCTGTACCACACGGTACAGGAGCTTGGTGGACTTAAAGAAGTGATCGAGCTGGATAAGTGGTGTCGTGTTGCCGACTTGATGAAGATCCCGAAAAGTGCTCAAGACCGTGTCACTAAACTCGACGATATTTACTGCAAATATCTATTGCCTTACGACACACTCTCACacgATGAGCGTCAAAAATTGATCGCAGAGGTGGATAAAGAGTGGAAACAGATTTGCAAAAAAGGCGATACTGATGACGAGCTGTATGAAGACGTCAACGATTGTATAGCAAagGGTCGAAGTATCGCATTAAGCGCTTATTACCGGGTTGCGCGCAACACTATCGCCATGTGGTTTAAAGaacagcagcaacaacaaccATCGGGCGGCCACTCGTCGTCTACGTCAGCAGGAACGGCGGCGGTGGTCCGGGCTGAAGACGTTGAGTCACTTTACTGGAAAAATGTGCAGGACAGGAAGAACCACATTTGCGTACTGTCCGGGTCAATCGATTCTGGCGCAGAGGGCTACGGATTCCCGACAACCAAGACAGCCACTTTCACTAAACACCCGTGGAATCTCAAGGTTCTCACCAACAATCCGGTGTCTGTGCTCAAGTCCCTGGGCCCAGTGATGGGCATGACCGTACCCACCATACACATGGGCATGGTATTTTCGGCATGCTGTTGGTACAAGGACCCACATGGACTACCATGGATTGAGTACCTGCATACTGGCGCTGACAAAGTGTGGTATGGTGTGCCGTCTAATCAAAGTGACCGGTTTCGGGCAGCCATGAAGCGTCTGCTGCCACGGGCTGTAGCAGAAGGCCAGAACCATCACTCATGGCTAGCTGCAGACAGTGGTATGGTGCCACCCAGTCGTTTGCTGGAGCATGGTGTCACCCTTACCCGAACCGTGCAAAATCCAGGCCAGTTCCTCATTGTCATGCCGCGCGCTTATACGTGCAATGTGTCCACTGGTTATGTTATATCTGAGAGCGTGTACTTCACACAGCCTGGTTGGCTTGACGGTGCCGAGAAGATTTTCCAGGACTTGCAGAAAAATTGTGAACCGGCCGCCTTTTCGTTTGAAAAGCTTCTGATAAACATGTCCACAGATTCACGTACACctcaaaacatattaaaacaaCTGCTAAATATGTTGAGCAATATGAGAGACTGTGAAGTGGCGCTTCGAAGTCAGCTGGTAGAGGATTTAGGCCTAAAGGCTTCCGAACGCATACGGCCCACAACATCTAAATCAAACGAGAATAACGATGATTATGAGTGTGATGTGTGTCATTCAATTCTTTACATATCAATGGTGAACAATTCACATGAAGACTGTGATTATTGTCTGAGACATGGCATTGagattttatcgaaaaaacaCAACCAACTCAAGTATTGCAAGTTTCTATATACCTTTGACGAGactgATTTGGATATGATATTAGTGAAACTTCGCGAAAGGATTGATTCAAAAAAGAAGAAGACATCTACTAAAAGTTGA
- Protein Sequence
- MSSNGSDAKKRKLLNNEEAILESSTKKIKVQAQRKFAQNAVIPTSTAQKPIQTPVVPNNVTKPPIKRPNTEDFLTFLCFRGTSLLPPRLDFFNKPQRSLSAQEIAAGKKRRKSTPILPVTNANNPYSVNSVNNESIERKNISQLSQTKFPLSKLGQKVMGRKLVRSSSRYTVRQEALTLRQLALRHVPKLKKSTSKVVKPLVKENKKKTEKNGKQVSLDGKQIQKLKGRITRSNSLPSIFCPAVNQLRDDKGKWCKGSSSKPSSKASDDSKDVEEERPSRKKTASNNLDHRSNSLGNMKRKTSIVKCKVANKNNRKTRSLASKSKSSDRDNYVVPDKKGDKNLKTVSKSNKANSLIETKPTIDVKRRTSSVDNMKTTRESKDILNSTRSRPPRRTKEAATLFMEMLRKDMRCPDEQEEDDTSSVESFPDLPNTRINEQRERELKVFSKQNKMEKHQEEHKLSEKRDDKSLSESKKTKLIDKKKVEKLKKKFEENNTLEKKKTKEVIESINFTENSGAVSFKRNLRPRRSSTMLDDYIMTDSDEDDMKCKSVVEVTKCEAPKLSNKVTIMAGNSKSQKCKLGTDESVKKNLKINKTDLKPKKDLNKDSEVKKSLSETKSKSILLKRDKELEIKNNKNGTVDKKNEKSSKNKTEILIITKEPKTTGSGSKNAGKKVPPPKQQSTKNENALNKKKSNLDLYNNNDKKKRSTSSSSVTSSSSSMFSGITSQTKEELLERMAENFDATSTACEGADKAMLSNIAESINSATMKKNAQSNAKEKRVDSSMVEKNMQSGSIVAEKKVANEVNSVKNKQELEKVSKTENLVAVPKEENIIVTTEKVENVVMVVDKVEKTESVVVPLNKVEKVENMVFQTIAKDLFLGQQKEIKITIPEYFSGKNFQLDNRFKQDDGLSVLSEICSALPRFNEPFVSSSQLLNKMPTASDSSFVKYVPPTISEDEKPPVPTLTPPSFESRTVKIVNLARGSSSSGTNDKNDLAASWKRAFKNVKLPKNGIASAAVSVGNNLIAWTKKKQNDNQTPPSKTYADGIDVGTKDIVSNSNLMKNTLQSSSLMNGTTEKKSEPSYKCQKTCCGETKSMEILDGKRTMSTTATNNASYLAKTTILNSTKYDLKFEKRSSSATTATTAAPITVEKQQQIRKDIVGDVSSSDDQSPEKKIFHQRRLSTTQSCSGNSSDAFSPDNETSVYAFQPDLPVASTPFRRNKPQSPAKSRTVSPNTSIAVSIENDSMEEKSHQSTVSSTTTDVDSEEGRLFYIPLPAGVRAQPMIQGVTVKLGTEGPQKKLVMSAKLVTKPPASTIPVSSISPKPERKIKPLCTTKITNSTTPVGTVQPTTRTVQPPKCTPSTSKQALPLLPQPQMPETKDDKKRLQQITTTTNSTTTAITSAKESKKSSSVSVTNNKKQKKTEKQVNNKRKSSEKVALKKKSSKEYSDMLDAPTFYPSEEDFKDPLEYFEIIKPVAQKYGICRVVPPPSFKPECKVSDDMRFTAYNQYVHKMMNRWGPNVREMIAMKKYLETQSIVLSNPPLIGGMELDLPKLYHTVQELGGLKEVIELDKWCRVADLMKIPKSAQDRVTKLDDIYCKYLLPYDTLSHDERQKLIAEVDKEWKQICKKGDTDDELYEDVNDCIAKGRSIALSAYYRVARNTIAMWFKEQQQQQPSGGHSSSTSAGTAAVVRAEDVESLYWKNVQDRKNHICVLSGSIDSGAEGYGFPTTKTATFTKHPWNLKVLTNNPVSVLKSLGPVMGMTVPTIHMGMVFSACCWYKDPHGLPWIEYLHTGADKVWYGVPSNQSDRFRAAMKRLLPRAVAEGQNHHSWLAADSGMVPPSRLLEHGVTLTRTVQNPGQFLIVMPRAYTCNVSTGYVISESVYFTQPGWLDGAEKIFQDLQKNCEPAAFSFEKLLINMSTDSRTPQNILKQLLNMLSNMRDCEVALRSQLVEDLGLKASERIRPTTSKSNENNDDYECDVCHSILYISMVNNSHEDCDYCLRHGIEILSKKHNQLKYCKFLYTFDETDLDMILVKLRERIDSKKKKTSTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134026;
- 90% Identity
- iTF_00972837;
- 80% Identity
- -