Apis004934.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- JARID2
- Assembly
- GCA_005508785.1
- Location
- NC:51599874-51622856[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4 5.7e+03 -2.3 0.1 49 74 500 525 480 529 0.70 2 4 0.22 3.6e+02 1.5 0.0 22 68 978 1024 969 1038 0.81 3 4 1e-20 1.7e-17 63.5 0.0 6 89 1535 1616 1531 1616 0.93 4 4 5.9 9.9e+03 -3.1 0.0 49 63 1630 1642 1626 1657 0.75
Sequence Information
- Coding Sequence
- ATGTCTTCTAATGGGTCAGATGCAAAGAAACGCAAACTGCTGAACAATGAAGAAGCTATTCTCGAGTCAAGTACTAAAAAAATCAAGGTACAAGCTCAGCGTAAATTTGCCCAAAATGCTGTGATACCCACCAGCACTGCACAGAAACCTATTCAGACTTCAGTGGTGCCTAATAATGTGACTAAACCTCCAATTAAACGGCCAAATACTGAAGACTTTCTTACCTTCCTTTGTTTTAGagGTACAAGTTTACTACCACCACGACTAGATTTCTTCAATAAACCTCAACGCTCTCTATCGGCACAAGAGATTGCTGCTGGAAagaaaagaagAAAAAGTACTCCTATACTGCCAGTAACTAATGCAAATAATCCATATAATGTAAATAGTGTAAATAATGAATCAATTGAACGAAAAAAGATTAGTCAGTTACCACAGACCAAGTTTCCATTATCTAAACTAGGACATAAAGTTATGGGTCGGAAGTTGGTAAGGTCCAGTTCAAGGTATACTGTTCGTCAAGAAGCTATCACATTACGTCAATTAGCCCTTCGTCatgttccaaaaataaaaaaaccaatgtcaaaagttattaaacctttagtaaaagaaaatattaaaactaaaactgaGAAAAATGGAAAACAAGTATCATTAGACGGTAAGCAAATACAAAAGTTGAAAGGCCGTATAACCCGATCAAATTCTTTACCGAGTATATTTTGTCCTGCGATAAATCAACTTCGAGATGACAAGGGAAAATGGTGTAAAGGGAGTTGTAGCAATAAACCTTCTTCAAAAACATCATCTGATGATTCGAAATATGTTGAAGAAGAAAGACCATCGAGAAAAAAGACTGCATCAAACAATTTAGATCATAGAAGTAATAGTCTGGGTAACATGAAACGAAAGACTAGTATTGTTAAATGTAAAGTGGCAAgtaaaaataacagaaaaactAGAAGTTTAGCTAGTAAACATAAGAACAGTGACCAGGATAATTATGTTGTTCCTGATAAGAAGTGTGATAAGAATTTGAAGACTGTATCTAAGAGTAACAGAGCTAACAGTTTAACTGAAACAAAATTAACTGTGGACGTGAAAAGAAGGACATCTTCAGTGGATAACATGAAATCATCTCATGAAAGTAAAGATATAATTAGttcaaCCCGTTCAAGGCCCCCTAGAAGAACTAAAGAAGCTGCAACTTTATTTATGGAAATGTTACGAAAAGATATGCGGTGCCCTGATGAGCAAGAAGATGATGCATCATCAGTTGAGAGTTTTCCTGAGCTTCCCAATACACGAATAAACGaacaaCGAGAACGTGAATTGAAGGTGTTTTCCaagcaaaacaaaattgaaaaacaactaGTAAAACAACAGATATGTGAAAAAAAGGATGATAAACCACTATTACAAGGAACTGATACTAAAAAGACTAAATTAACTGACAAAAATAaggttaataagttaaaaaaaaaggttgatgTGAAAACTCAGGAAAAGAAGAAGATGAAAGATATTATAGAGacgattaattttaatgaaaacagcGGAACAACATCGTTTAAAAGAAATCTGAGGCCTCGACGTTCCTCTACCATGTTAGATGATTATATCATGACTGATTCGGATGAGGACGACATGAAATGTGAACCTGTTATAGAGGTGACAAAATGTGAAGCTTCTAAACCGTCGACCAAAACGATAACTGTGGCAGGGGaatcaaaatctcaaaaatataagttaagtaCTGACgaatctgttaaaaaaaatcttaaaatcaaTAAGACTGACTTGAAACCGAATAAAGATTTGAATAATGATTCtgaagtgaaaaaaaatctttctgAAACTAagtcaaaaagtattttattaaaacgtgaCAAAGAGCTAGAAatcaagaatattaaaaatactgctgtcgataaaaaaaatgaaagatcGTCAAAAAATAAGACTGAAATCTTAGTAATTACTAAAGAACCAAAAACTACCGGCATTGGTTCTAAAAACGCCGGAAAAAAAGTGCCACCCCCTAAGCAGCAGTcgacaaaaaaagaaaactctTCAGACAAGAAAAAATCCAATTtagatttgtataataataacaacaataaaaaaaaacggtctACATCATCGTCGTCAGTGACGTCCTCGTCGTCTTCCATGTTTAGTGGTATTACTAGTCAAACAAAAGAAGAGCTTTTAGAACGCATGGCCGCAAATTTCGATGCCAAACCTACCGCTTGTGAGGGTGCTGAGAAATCTGCCGATAAAGTGACGTCGACACCAACGGCGGAAAGCAACAATGGTTCAGCTGTGACAAAAAATGCACTAGGCAACGCAAAAGAAAAACATGTTGAAATGAGcgtgattgaaaaaaatttactgaGCTGTAGTATTGTGGTGGAAAAAAAGGCAGCTAATGAAGTTAATTCAGTAAATAACGAATTGTTGAAAAACAATCAAGAGTTGGAAAAATTTTCCAAAACGGAGAACGTAGTTGCAGTGCCAAAAGAAGAAAACGTCAACGTGACCACTGAAAAAGTAGAAAACGTGGTTATGGTTGTTGACAAGGTAGAGAAAACCGAGTCTATGATAGTGCCATTAAACAAAGTAGAAAAAGTGGAAAACATGGTGTTCCAAACCATAGCGAAAGATCTTTTCTTAGGGCAGCAGAAAGAGATCAAGATCACCATACCTGAATACTTCGCCGGTAAAAACTTCCAGTTGGACAACAGGTTTAAACAAGATGATGGCCTTTCCGTGTTATCCGAAATTTGTAGCGCCCTGCCTAGGTTTAATGAACCGTATGTGTCCAGTAGACAGCTTTTAAACAAGATGCCGGCGCCTGGGGATAGCAGCTTTGTAAAGTACGTTCCGCCAGATATCAGCGGAGACGAGAAGCCTACGGTGCAGACGCTGACGCCACCGGCGTTTGAAAGTCGCACcgtaaaaattgtaaacttgGCGCGTGGTAGCAGCTCGTCCGGGGCAAACGATAAAAATGATTTGGCCGCGTCTTGGAAACGGGCgttcaaaaatgtcaaattacCGAAAAATGGAATCGTCTCATCCGCTGTTTCGGTCGGTAACAATTTGATTGCTTGGactaaaaagaaacaaaatgaCAATCAAATACCGCTACCAAAGACATGCACTGATGGTATTGATGGCAGCGGAAATAATGGTGGTACAAAAGAAATAACGGCCAATTCATTGAAAAACACTCTTCAGCCATCACCAGTGAATGGTATCGCTGAAAAGAAATCTGAACCTTCATATAAATACCAAACGATTTGCTGTGGCGAATCGAAAACTATAGAAATGTTGGATTGCAAAAAGAATGTGCTGGCATCAGCGCCTAACAACGCCTCGTATTTAGCTAAAACGACTATATTGAGCAGTACGAAGTatgatttgaaatttgaaaaacgaTCCTCGTCGGCTGTAACAGCGACTATGGCAGTGCCCATCAGCCTAGAAAAACAACCACAAATACGCAAAGACTTCGTGGGAGACGTGTCGTCTTCGGACGATCAGAGTCCGGAGAAGAAGATATTCCACCAGCGGCGGCTGTCTACCACCCAGTCATGTAGCGGAAACAGTTCCGATGCCTTCTCACCTGATAACGAGACGAGTGTTTACGCTTTCCAACCTGACTTGCCGATAGCCAGCACCCCTTTCCGTCGGAATAAACCCCAATCGCCCGCAAAGTCCAGGACAGTTTCGCCCAACACGTCAATCGCTGTGAGTATTGAAAACGATTCTATGGAAGAAAAATCTCATCAGTCCACCGTGTCATCAACAACAACGGACGTTGATAGCGAAGATGGACGTCTTTTTTACATCCCATTACCGGCCGGTGTTCGAGCACAGCCGATGATTCAGGGCGTCACAGTCAAGCTTGGCACGGAAGGAcctcaaaaaaaattagtgatgAGCGCTAAGCTAGTAACCAAACCCCCGGCATCTACGATACCAGTCAGttCCATATCGCCAAAACCCGAGCGGAAAATCAAACCTCTGTGCACGACGAAAATTACCAACAGCACAACTCCCGTCGGTACTGTGCAACCAACTACTAGAACCATTCAGCCCCCAAAGTGTACCCCCTCAACTTCGAAACAAGTGTTACCGTTACCGCCGCAGCCACAAATCCCGGAAACGAAAGATGATAAGAAACGAATACAACAAATCACTACTACAACTAATTCTACTACTACTGCCATTACTTCTGCTAAGGAATCTAAAAAATTGTCATCCGTCACTAATAACAAGAAACATAAAAAgacTGAAAAACAAGTTAATAATAAGAGAAAGTCCAGCGAGAAagttgtttcaaaaaaaaaattagctaaaGAACATGCTCACATGTTGGATGCGCCGACATTTTATCCATCTGAAGAAGACTTCAAGGATCCattagaatattttgaaattgttaaacCCATTGCTCAAAAGTATGGTATATGCAGAGTCGTGCCGCCGCCCAGTTTCAagCCGGAATGCAAAGTCAGCGACGACATGCGTTTCACAGCGTACAACCAGTACGTGCACAAAATGATGAACCGTTGGGGCCCAAACGTCCGCGAAATGATGGCCATGAAAAAGTACCTGGAAACACAGTCAATAGTCTTATCCAACCCGCCGCTCATCGGTGGCATGGAATTAGATTTACCGAAGCTGTACCATACTGTACAGGAGCTTGGCGGACTCAAGGAAGTGATAGAACTGGACAAGTGGTGTCGTGTCGCCGACCTGATGAAGATTCCGAAGAGTGCTCAAGACCGTGTCACCAAACTTGATGACATTTACTGCAAATATCTATTGCCGTATGACACACTCTCTCACGACGAACGACAAAAATTAATCGCAGAAGTGGACAAAGAGTGGAAACAGATCTGCAAGAAAGGCGACACTGATGATGAGTTGTATGAAGATGTCAACGATTGTATAGCAAAAGGTCGAAGTATCGCTTTGAGCGCTTATTACCGGGTAGCGCGCAACACTGTTGCCATGTGGTTCAAGgaacagcagcaacaacaacaaccgtCAGGCGGCCACTCATTATCGACGTCAACTGTGGCAGCGGTTCGGGCCGAAGATGTCGAGTCGCTCTACTGGAAAAACGTGCAGGACAGGAAAAACCACATATGTGTATTGTCCGGTTCGATCGATTCGGGTGCTGAGGGCTATGGATTCCCGACAACCAAGACGGCCACGTTTACCAAACACCCGTGGAACCTAAAGGTGCTCACTAACAACCCGGAGTCTGTGCTCAAGTCGCTAGGCCCGGTGATGGGCATGACTGTGCCCACCATACACATGGGTATGGTGTTCTCGGCATGTTGCTGGTACAAAGATCCACATGGGTTGCCATGGATCGAGTACCTGCATACCGGCGCCGAAAAGGTATGGTACGGCGTGCCATCCAGCCAGAGCGACCTTTTCCGGGCGGCCATGAAGCGCCTGCTTCCCCGGGCCGTGGCTGAAGGTCAGAATCATCACACATGGCTGGCCGCGGACAGCGGCATGGTGCCCCCCAGCCGGTTACTTGATCACGGCGTCACGCTCACCCGGACCGTGCAAAAACCAGGCCAGTTCCTCATTGTCATGCCACGTGCTTACACGTGTAATGTATCCACTGGTTATGTTATATCCGAGAGTGTGTACTTCACACAGCCCGGTTGGCTTGACAGCGCCGAGAAGACTTTccagGACTTGCAAAAGAATTGTGAACCCGCTGCCTTTTCGTTTGAAAAGCTTCTTATAAACATGTCCACGGATTCGCGTACAcctcaaaaaatattgaaacaaCTTCTAAACATGTTGAGCAACATGAGAGACTGTGAAGTAGCGCTTCGGAGTCAGCTGGTGGAGGATTTGGGCCTAAAAACGTCTGAACGTATTCGGCCCACAACGTCCAAATCAAATGAGCATAATGATGACTATGAGTGTGACGTGTGCCATTCAATTCTTTACATATCAATGGTGAACAACTCGCATGAAGACTGTGACTATTGTCTGAGACATGGCATTgagattttatcaaaaaaacacAATCAACTCAAGTATTGCAAGTTTTTGTACACTTTTGACGAGaCTGATTTggatatgatattaataaaacttcGTGAAAGGATTGATTCGAAAAAAAAGAAGACATCTACCAGAAGTTGA
- Protein Sequence
- MSSNGSDAKKRKLLNNEEAILESSTKKIKVQAQRKFAQNAVIPTSTAQKPIQTSVVPNNVTKPPIKRPNTEDFLTFLCFRGTSLLPPRLDFFNKPQRSLSAQEIAAGKKRRKSTPILPVTNANNPYNVNSVNNESIERKKISQLPQTKFPLSKLGHKVMGRKLVRSSSRYTVRQEAITLRQLALRHVPKIKKPMSKVIKPLVKENIKTKTEKNGKQVSLDGKQIQKLKGRITRSNSLPSIFCPAINQLRDDKGKWCKGSCSNKPSSKTSSDDSKYVEEERPSRKKTASNNLDHRSNSLGNMKRKTSIVKCKVASKNNRKTRSLASKHKNSDQDNYVVPDKKCDKNLKTVSKSNRANSLTETKLTVDVKRRTSSVDNMKSSHESKDIISSTRSRPPRRTKEAATLFMEMLRKDMRCPDEQEDDASSVESFPELPNTRINEQRERELKVFSKQNKIEKQLVKQQICEKKDDKPLLQGTDTKKTKLTDKNKVNKLKKKVDVKTQEKKKMKDIIETINFNENSGTTSFKRNLRPRRSSTMLDDYIMTDSDEDDMKCEPVIEVTKCEASKPSTKTITVAGESKSQKYKLSTDESVKKNLKINKTDLKPNKDLNNDSEVKKNLSETKSKSILLKRDKELEIKNIKNTAVDKKNERSSKNKTEILVITKEPKTTGIGSKNAGKKVPPPKQQSTKKENSSDKKKSNLDLYNNNNNKKKRSTSSSSVTSSSSSMFSGITSQTKEELLERMAANFDAKPTACEGAEKSADKVTSTPTAESNNGSAVTKNALGNAKEKHVEMSVIEKNLLSCSIVVEKKAANEVNSVNNELLKNNQELEKFSKTENVVAVPKEENVNVTTEKVENVVMVVDKVEKTESMIVPLNKVEKVENMVFQTIAKDLFLGQQKEIKITIPEYFAGKNFQLDNRFKQDDGLSVLSEICSALPRFNEPYVSSRQLLNKMPAPGDSSFVKYVPPDISGDEKPTVQTLTPPAFESRTVKIVNLARGSSSSGANDKNDLAASWKRAFKNVKLPKNGIVSSAVSVGNNLIAWTKKKQNDNQIPLPKTCTDGIDGSGNNGGTKEITANSLKNTLQPSPVNGIAEKKSEPSYKYQTICCGESKTIEMLDCKKNVLASAPNNASYLAKTTILSSTKYDLKFEKRSSSAVTATMAVPISLEKQPQIRKDFVGDVSSSDDQSPEKKIFHQRRLSTTQSCSGNSSDAFSPDNETSVYAFQPDLPIASTPFRRNKPQSPAKSRTVSPNTSIAVSIENDSMEEKSHQSTVSSTTTDVDSEDGRLFYIPLPAGVRAQPMIQGVTVKLGTEGPQKKLVMSAKLVTKPPASTIPVSSISPKPERKIKPLCTTKITNSTTPVGTVQPTTRTIQPPKCTPSTSKQVLPLPPQPQIPETKDDKKRIQQITTTTNSTTTAITSAKESKKLSSVTNNKKHKKTEKQVNNKRKSSEKVVSKKKLAKEHAHMLDAPTFYPSEEDFKDPLEYFEIVKPIAQKYGICRVVPPPSFKPECKVSDDMRFTAYNQYVHKMMNRWGPNVREMMAMKKYLETQSIVLSNPPLIGGMELDLPKLYHTVQELGGLKEVIELDKWCRVADLMKIPKSAQDRVTKLDDIYCKYLLPYDTLSHDERQKLIAEVDKEWKQICKKGDTDDELYEDVNDCIAKGRSIALSAYYRVARNTVAMWFKEQQQQQQPSGGHSLSTSTVAAVRAEDVESLYWKNVQDRKNHICVLSGSIDSGAEGYGFPTTKTATFTKHPWNLKVLTNNPESVLKSLGPVMGMTVPTIHMGMVFSACCWYKDPHGLPWIEYLHTGAEKVWYGVPSSQSDLFRAAMKRLLPRAVAEGQNHHTWLAADSGMVPPSRLLDHGVTLTRTVQKPGQFLIVMPRAYTCNVSTGYVISESVYFTQPGWLDSAEKTFQDLQKNCEPAAFSFEKLLINMSTDSRTPQKILKQLLNMLSNMRDCEVALRSQLVEDLGLKTSERIRPTTSKSNEHNDDYECDVCHSILYISMVNNSHEDCDYCLRHGIEILSKKHNQLKYCKFLYTFDETDLDMILIKLRERIDSKKKKTSTRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134026;
- 90% Identity
- iTF_00940158; iTF_00184392; iTF_01037530; iTF_01032667;
- 80% Identity
- -