Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: JARID2
Assembly: GCA_036289425.1
Location: JAZAQC010000016.1:6682491-6696918[-]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.052 1e+02 3.9 0.0 18 68 962 1012 946 1026 0.81

2 3 2.8e-20 5.5e-17 62.4 0.0 8 89 1526 1605 1520 1605 0.92

3 3 7.6 1.5e+04 -3.1 0.0 49 63 1619 1631 1615 1646 0.75

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.052	1e+02	3.9	18	68	962	1012	946	1026	0.81
2	3	2.8e-20	5.5e-17	62.4	8	89	1526	1605	1520	1605	0.92
3	3	7.6	1.5e+04	-3.1	49	63	1619	1631	1615	1646	0.75

Sequence Information

Coding Sequence: ATGTCTTCAATTGGGTCGGATGCTAAGAAACGCAAACTGCTGAACAATGAAGAAGCTATTCTTGAGTCGAGTACTAAAAAaatCAAGGTACAAGCACAGCGTAAATTTGCCCAAAATGCTGTGATACCCACCAGCACTGCACAAAAACCTATTCAGACTCCAGTAGTGCCTAATAATGTGACAAAACCACCAATTAAGCGGCCAAATACTGAAGACTTCCTTACCTTCCTTTGTTTTAGagGTACAAGTTTATTACCTCCACGACTAGATTTCTTCAATAAACCTCAACGCTCTTTATCGGCACAAGAGATTGCTGCtggaaaaaaAAGAAGAAAAAGCACTCCTATACTGCCAGTTACTAATGCAAATAAtccatataatgtaaatagtgTAAATAATGAATCAATTGAACGAAAAAACATTAGTCAGTTATCACAGACCAAATTTCCATTATCTAAACTAGGACAGAAAGttatgGGTCGAAAGTTGGTAAGATCCAGTTCAAGGTATACTGTTAGACAAGAAGCTCTCACATTACGTCAATTAGCTCTTCGTCAtgttccaaaaataaaaaaacccaCCTCAAAAGTTATTAAACCTTtagtaaaagaaaataataaaaaaaaaactgagaaAAATGGAAAACAAGTATCATTAGATGGTAAGCAAATACAAAAGTTGAAAGGCCGTATAACTCGATCAAATTCTTTACCAAGTATATTTTGTCCTGCGGTAAATCAACTTCGagatgatAAAGGGAAATGGTGTAAAGGGAGTTCTAGTAAACCTTCTTCAAAAGCATCTGATGACTCAAAAGATGTTGAAGAAGAAAGACCATCGAGAAAAAAGACTGCATCAAACAATTTAGATCATAGAAGTAATAGTCTGGGTAACATGAAACGAAAGACTAGTattgttaaatgtaaaatggcaaataaaaataacagaaaaacTAGAAGTTTAGCGAGTAAATCTAAGAGCAGCGACCGAGATAATTATGTTGTTCCTGATAAGAAGGGTGATAAGAATTTGAAGACTGTATCTAAGAGTAACAAAGCAAACAgtttaattgaaacaaaacCAACAATAGATGTGAAAAGAAGAACGTCTTCAGTggataatatgaaaacaaCTCATGAGAGTAAAGACATAATTAGttcaaCTCGTTCAAGGCCCCCTAGAAGAACTAAAGAGGCTGCTACTTTATTTATGGAAATGTTACGAAAAGATATGCGGTGCCCTGATGAGCAAGAAGAAGATGATACATCATCTGTTGAGAGTTTTCCTGAGATTCCCAATACACGAATAAATGaacAACGCGAACGTGAGTTGAAAGTGTTTTCCAAGCAAAACAAAATGGAAAAACATCAAGAAGAACATAAGTTATCTGAAAAAAGAGAAGATAAACCATTGTCTGATAGTAAaaagacaaaattaattaacaagaAGAAAGTAgaaaagttgaaaaaaaagtttgaggAGAATAATACTTTGGAAAAGAAAAAGACAAAAGAAGTTATAGAGACGATTAACTTTACTGAAAACATTGGAGCAGTGTCGTTTAAAAGGAATCTAAGACCTCGACGTTCTTCTACCATGTTAGATGATTATATCATGACTGATTCGGATGAGGACGATATGAAATGTAAATCCGTTATTGAGGTTACAAAATGTGAACCTCCTAGACCGTCGAACAAAGTGACGATTGTGGCAGGAAATTCAAAATCTCAAAAGTGTAAGTTAAGTACTGACGaatctgttaaaaaaaatcttaaaattaataagactGACTTAAAACCGAAAAAAGATTTGAATAAAGATTCTGAAGTTAAAAAAAGTCTTTCTGAAACTAAgtcaaaaagtattttattaaaatgtgacAAAGAGCTAGAAatcaagaataataaaaatggtatcgtcgataaaaaaaatgaaaaatcgtCAAAAAATAAGACTGAAATTGTAGTAATTACTAAAGAACCAAAAACTACCGGCAGTGGTTCAAAAAATGCCGGAAAAAAAGTGCCACCTCCTAAGCAGTTGtcaacaaaaaatgaaaacgctTTGAACAagaaaaaatctaatttagatttgtacaataataataataaaaaaaaacgttctACATCATCGTCGTCGGTGACGTCTTCATCGTCTTCCATGTTTAGTGGTATTACTAGTCAAACGAAAGAAGAGCTTTTGGAACGTATGGCCGAAAATTTTGATGCCACATCAACCGCTTGCGAGGGTGCCGATAAAAAAGCAATGCTGTCAAATATAGCGGATAGCATCAACAGCGcaactatgaaaaaaaatgcacaAAGCAATGCGAAGGAAAAACGTGTAGATAGCAATatggtagaaaaaaatatggagAGTGGTAGTATTGttgtggaaaaaaaaatagccaaCGAAGTGGATTCAGTAAAGAACAAACAAGAGTTAGAAAAAGTTTCAAAAACGGAAAACTTAGTTGCAGTTCCAAAAGAAGAAAATGTCATCATAACCGCTGAAAAAGTAGAAAACGTAGTTATGGCTGTCGACAAGGTAGAGAAAACGGAGTCTGTGGTAGTGCCATTGAACAAAGTAGAAAAAGTAGAAAATATGGTGTTTCAAACTATAGCTAAAGACCTATTCTTGGGGCAGCAAAAAGAGATCAAAATCACCATACCCGAATACTTCTCCGATAAAAACTTCCAATTAGACAACAGGTTTAAACAAGATGATGGGCTCTCTGTGTTATCCGAGATTTGTAGTGCCCTGCCCAGATTCAACGAACCTTTTGTGTCTAGTAGACAGTTGTTAAACAAGATGCCAACACCCGGTGACAGCAGTTTCGTGAAATATGTTCCTCCAACCATAAGTGAAGACGAAAAGTCTCCGGTGCCGATATTAACGCCGCCGTCGTTTGAAAGCCGCACCGTCAAAATCGTAAATTTGGCCCGCGGTAGCAGCTCGTCTGGGACAAacgaaaaaaatgatttgacTGCGTCTTGGAGACGAGCGTTCAAAAACGTCAAATTACCGAAAAATGGAATCGCCTCTGCCGCCGTTTCGGTCGGTAACAACTTAATTGCTTGGACGAAAAAGAAACAAAACGACAATCAAACACCACCATCAAAGACGACGACATACACTGATGGTATAGATGTTGGCACAAAAGAAATAGTTTCTAATAGTAATTTGATGAAAAACACCCTCCAATCATCATCACTGATAAATGGTACTACGGAAAAGAAATCTGATCCTTCATATAAATGCCAAAAGACTTGTTGTGATGAAACAAAAACCATGGACATTTCGGACGGCAAAAAGATGATGTCAACAACAGCCACCAATAATGCGTCCTATCTGGCCAAGACGACCATACTAAACAGTACAAAGTAcgatttgaaatttgaaaaacgTTCATCGTCGGCTACAACAGCAACTACTGCAGCGCCCATCAGCGTCGAAAAACAACAAATCCGCAAAGACGTCGTAGGTGACGTTTCGTCTTCGGACGATCAGAGTCCGGAGAAGAAGATATTCCACCAGCGGCGGCTGTCTACCACCCAGTCGTGTAGCGGAAATAGTTCGGACGCTTTTTCACCTGATAACGAAACGAGTGTTTATGCTTTCCAGCCCGATTTGCCGGTTGCCAGCACTCCTTTTCGTCGGAATAAACCACAATCGCCTGCCAAGTCCAGGACTGTTTCGCCCAACACGTCAATCGCTGTGAGTATTGAAAATGATTCTATGGAAGAAAAATCCCATCAGTCCACTGTGTCATCAACAACAACGGATGTTGATAGCGAGGAAGGACGGCTTTTTTACATTCCGTTACCAGCTGGTGTTCGGGCTCAGCCAATGATTCAAGGCGTCACGGTCAAGCTGGGCACAGAAGGACCACAGAAAAAATTAGTGATGAGCGCTAAGCTAGTAACCAAACCACCTGCTTCTACGATACCAGTCAGTTCCATATCGCCAAAACCTGAGCGGAAAATCAAACCGCTGTGCACAACCAAAATTACCAACAGCACTACCCCTGTCGGCACTGTGCAACCAACTACTAGAACTGTTCAGCCCCCAAAATGTACTCCCTCGACTTCAAAACAAGCGTTACCATTACTGCCACAGCCGCAAATCCCGGAAACGAAAGACGATAAAAAACGGTTACAACAAATCACTACAACTACTAATTCTACTACTACTGCCATTACTTCTGCTAAGGAATCGAAAAAATCGTCATCCATATCTGCCGCCAACAAcaagaaacaaaaaaagaCTGAAAAACAAGTTAACAATAAGAGGAAGTCCAGCGAAAAAGTAGCTTTGAAAAAGAAATCGTCTAAAGAATATTCCGATATGTTGGATGCGCCGACGTTTTATCCATCCGAAGAAGACTTTAAGGATCCtttagaatattttgaaataatcaaaCCCGTTGCTCAAAAATACGGTATATGCAGAGTCGTGCCGCCACCTAGTTTTAAgCCGGAATGTAAAGTTAGCGACGACATGCGTTTCACGGCATACAACCAATATGTGCATAAGATGATGAACCGTTGGGGCCCAAACGTGCGCGAAATGATAGCCATGAAAAAGTATCTGGAAACACAGTCGATAGTCTTGTCCAATCCTCCGCTCATTGGTGGCATGGAACTGGATTTACCCAAGCTATACCACACGGTACAGGAGCTTGGCGGACTTAAAGAAGTGATCGAGCTAGATAAGTGGTGTCGTGTTGCCGACTTGATGAAGATCCCGAAAAGTGCTCAAGACCGCGTCACTAAACTCGACGACATTTACTGCAAATATCTATTGCCGTACGATACACTCTCACacgATGAGCGTCAAAAATTGATCGCAGAGGTTGATAAAGAGTGGAAACAGATTTGCAAAAAAGGCGATACTGATGATGAGCTGTATGAAGACGTCAACGATTGTATAGCAAAGGGTCGAAGTATCGCATTGAGCGCTTATTACCGGGTTGCGCGCAACACTATCGCCATGTGGTTTAAGGAacagcagcaacaacaacCGTCGGGCGGCCATTCATCATCTACGTCAGCAGCAACGGCGGCGGTGGTCCGAGCTGAAGACGTTGAGTCGCTTTACTGGAAAAATGTGCAGGACAGGAAGAACCACATTTGCGTGTTGTCTGGGTCAATCGACTCTGGTGCAGAGGGCTACGGATTCCCGACAACCAAGACAGCCACTTTCACCAAACACCCGTGGAATCTCAAAGTTCTCACCAACAACCCGGTGTCTGTGCTCAAGTCCTTGGGCCCAGTGATGGGTATGACTGTACCCACCATACACATGGGCATGGTATTCTCGGCATGCTGTTGGTACAAGGATCCACATGGACTACCATGGATCGAGTACCTGCATACTGGTGCCGACAAAGTGTGGTATGGTATTCCGTCTGATCAAAGTGACAGGTTTCGAGCAGCCATGAAGCGCCTGCTACCGCGGGCTGTAGCAGAAGGCCAGAACCATCACTCATGGCTGGCTGCGGACAGTGGTATGGTGCCACCTAGTCGTTTGCTGGAGCATGGCGTCACTCTTACCCGGACCGTGCAAAATCCGGGCCAATTCCTCATTGTCATGCCGCGCGCTTATACGTGCAATGTGTCCACTGGTTATGTTATATCTGAGAGCGTGTACTTCACACAGCTTGGTTGGCTTGACGGTGCCGAGAAGATTTTCCAGgacttacaaaaaaattgtgaacCGGCCGCCTTTTCATTTGAAAAGCTTCTGATAAACATGTCCACAGATTCACGTACACCTCAAAACATACTAAAACAGctGCTAAATATGTTGAGCAACATGAGAGACTGTGAAGTAGCGCTTCGAAGTCAGTTGGTAGAGGATTTAGGCCTAAAGGCTTCAGAACGCATTCGGCCTACAACATCCAAATCAAATGAGCATAACGATGATTATGAGTGTGATGTGTGTCATTCAATTCTTTACATATCAATGgTAAACAATTCGCATGAAGATTGTGACTATTGTCTGAGACACGGCATTgagattttatcaaaaaaacacAACCAACTCAAATATTGCAAGTTTCTATACACCTTTGATGAGactGATTTGGATATGATATTAGTGAAACTTCGCGAAAGGAttgattcaaaaaaaaagaagacatCTACCAAAAGTTGA
Protein Sequence: MSSIGSDAKKRKLLNNEEAILESSTKKIKVQAQRKFAQNAVIPTSTAQKPIQTPVVPNNVTKPPIKRPNTEDFLTFLCFRGTSLLPPRLDFFNKPQRSLSAQEIAAGKKRRKSTPILPVTNANNPYNVNSVNNESIERKNISQLSQTKFPLSKLGQKVMGRKLVRSSSRYTVRQEALTLRQLALRHVPKIKKPTSKVIKPLVKENNKKKTEKNGKQVSLDGKQIQKLKGRITRSNSLPSIFCPAVNQLRDDKGKWCKGSSSKPSSKASDDSKDVEEERPSRKKTASNNLDHRSNSLGNMKRKTSIVKCKMANKNNRKTRSLASKSKSSDRDNYVVPDKKGDKNLKTVSKSNKANSLIETKPTIDVKRRTSSVDNMKTTHESKDIISSTRSRPPRRTKEAATLFMEMLRKDMRCPDEQEEDDTSSVESFPEIPNTRINEQRERELKVFSKQNKMEKHQEEHKLSEKREDKPLSDSKKTKLINKKKVEKLKKKFEENNTLEKKKTKEVIETINFTENIGAVSFKRNLRPRRSSTMLDDYIMTDSDEDDMKCKSVIEVTKCEPPRPSNKVTIVAGNSKSQKCKLSTDESVKKNLKINKTDLKPKKDLNKDSEVKKSLSETKSKSILLKCDKELEIKNNKNGIVDKKNEKSSKNKTEIVVITKEPKTTGSGSKNAGKKVPPPKQLSTKNENALNKKKSNLDLYNNNNKKKRSTSSSSVTSSSSSMFSGITSQTKEELLERMAENFDATSTACEGADKKAMLSNIADSINSATMKKNAQSNAKEKRVDSNMVEKNMESGSIVVEKKIANEVDSVKNKQELEKVSKTENLVAVPKEENVIITAEKVENVVMAVDKVEKTESVVVPLNKVEKVENMVFQTIAKDLFLGQQKEIKITIPEYFSDKNFQLDNRFKQDDGLSVLSEICSALPRFNEPFVSSRQLLNKMPTPGDSSFVKYVPPTISEDEKSPVPILTPPSFESRTVKIVNLARGSSSSGTNEKNDLTASWRRAFKNVKLPKNGIASAAVSVGNNLIAWTKKKQNDNQTPPSKTTTYTDGIDVGTKEIVSNSNLMKNTLQSSSLINGTTEKKSDPSYKCQKTCCDETKTMDISDGKKMMSTTATNNASYLAKTTILNSTKYDLKFEKRSSSATTATTAAPISVEKQQIRKDVVGDVSSSDDQSPEKKIFHQRRLSTTQSCSGNSSDAFSPDNETSVYAFQPDLPVASTPFRRNKPQSPAKSRTVSPNTSIAVSIENDSMEEKSHQSTVSSTTTDVDSEEGRLFYIPLPAGVRAQPMIQGVTVKLGTEGPQKKLVMSAKLVTKPPASTIPVSSISPKPERKIKPLCTTKITNSTTPVGTVQPTTRTVQPPKCTPSTSKQALPLLPQPQIPETKDDKKRLQQITTTTNSTTTAITSAKESKKSSSISAANNKKQKKTEKQVNNKRKSSEKVALKKKSSKEYSDMLDAPTFYPSEEDFKDPLEYFEIIKPVAQKYGICRVVPPPSFKPECKVSDDMRFTAYNQYVHKMMNRWGPNVREMIAMKKYLETQSIVLSNPPLIGGMELDLPKLYHTVQELGGLKEVIELDKWCRVADLMKIPKSAQDRVTKLDDIYCKYLLPYDTLSHDERQKLIAEVDKEWKQICKKGDTDDELYEDVNDCIAKGRSIALSAYYRVARNTIAMWFKEQQQQQPSGGHSSSTSAATAAVVRAEDVESLYWKNVQDRKNHICVLSGSIDSGAEGYGFPTTKTATFTKHPWNLKVLTNNPVSVLKSLGPVMGMTVPTIHMGMVFSACCWYKDPHGLPWIEYLHTGADKVWYGIPSDQSDRFRAAMKRLLPRAVAEGQNHHSWLAADSGMVPPSRLLEHGVTLTRTVQNPGQFLIVMPRAYTCNVSTGYVISESVYFTQLGWLDGAEKIFQDLQKNCEPAAFSFEKLLINMSTDSRTPQNILKQLLNMLSNMRDCEVALRSQLVEDLGLKASERIRPTTSKSNEHNDDYECDVCHSILYISMVNNSHEDCDYCLRHGIEILSKKHNQLKYCKFLYTFDETDLDMILVKLRERIDSKKKKTSTKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00134026;
90% Identity: iTF_00972837;
80% Identity: -