Msac009855.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- JARID2
- Assembly
- GCA_002803265.2
- Location
- NW:146001-161039[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 1.8e+02 2.0 0.0 18 68 962 1013 949 1026 0.82 2 3 1.4e-20 2e-17 62.7 0.0 8 89 1521 1600 1515 1600 0.92 3 3 4.3 6.3e+03 -2.9 0.0 49 63 1614 1626 1610 1641 0.75
Sequence Information
- Coding Sequence
- ATGTCTTCGAATGGGTTGGATGTAAAGAAACGCAAACTGCTGAACAATGAAGAAGCTATTCTTGAGTCGAGCACTAAAAAAATCAAGGTACAAGCGCAGCGTAAATTTGCCCAAAATGCTGTGATACCCACCAGCACTGCACAAAAACCTATTCAGACTCCAGTGGTGTCTAATAATGTGACAAAACCACCAATTAAGCGGCCAAATACTGAAGACTTTCTTACCTTCCTTTGTTTTAGagGTACAAGTTTATTACCTCCACGACTAGATTTCTTCAATAAACCCCAACGCTCTCTATCGGCACAAGAGATTGCTGCtggaaaaaaaaGAAGAAAAAGCACTCCTATACTGCCAGTAACTAATGCGAATAATccttataatgtaaatagtgTAAATAATGAATCAGTTGAacggaaaaatattaatcagttATCACAAACCAAGTTTCCATTATCTAAACTAGGACAAaaagtcATGGGTCGAAAGTTGGTAAGATCCAGTTCAAGGTATACTGTTAGACAAGAAGCTCTCACATTACGTCAATTAGCCCTTCGTCAtgttccaaaaataaaaaaatccacCTCAAAAGTTATTAAacCTTtagttaaagaaaatattaaaaaaaaaactgagaaAAATGGAAAACAAGTATCATTAGATGGTAAGCAAATACAGAAGTTGAAGGGCCGTATAACTCGATCAAATTCTTTACCAAGTATATTTTGTCCTGCGGTAAATCAACTTCGAGatgataAAGGGAAATGGTGTAAAGGGAGTTGTAGTAAACCTTCTTCAAAAGCATCTGATGATTCTAAAGATGTTGAAGAAGAAAGACCTTCGAGAAAAAAGACTGcatcaaaaaatttagatcATAGAAGTAATAGTCTAGGTAACATGAAACGAAAGACTAGTATTGTTAAATGTAAAGtggcaaataaaaataacagaaaaacTAGAAGTTTAGCGAGTAAATCTAAGAGCAGCGACCAAGATAATTATGTTGTTCCTGATAAGAAGGGTGATAAGAATTTGAAGACTGTATCTAAGAGTAATAAAGCAAACAGtttaattgaaacaaaacCAACAGTAGACGTGAAAAGAAAGACATCTTCTGtggataatatgaaaataactcGTGAGAGTAAAGatataattagTTCAACTCGTTTAAGGCCTCCTAGAAGAACTAAAGAAGCTGCTACTTTATTTATGGAAATGTTACGAAAAGATATGCGGTGCCCAGATGAGCAAGAAGAAGATGATACATCATCTGTTGAGAGTTTTCCTGAGCTTCCCAATACACGAATAAAtgaaCAACGTGAACGTGAGTTGAAAGTGTTTTCCAAGCAAAACAAAATGGAAAAACATCAAGAAGAACAAAAGTTATCTGAAAAAAAggatgataaatcattgtctGATAGTAAAAAgacaaaattagttaataaaaagaaggcagaaaagttgaaaaaaaaaattgaggtgAATAATACTCTGGAAAAGAAAAAGATAAAAGAAGTTATAGAGTCAATTGACTTTACTGAAAATAGTGGAATAGCGTCATTTAAAAGAAATCTGAGGCCCCGACGCTCTTCTACCATGTTAGATGATTATATCATGACTGATTCAGATGAGGACGACATGAAATGTAAACCTATTATAGAGGTGACAAAATGTGAAGCTCCTAAACTGTCGAACAAAATGACAATTGTGGCAGGGAACTCAAAATCTCAAAAGTGTAAGTTAAGTACTGACgaatctgttaaaaaaaatcttaaaattaataagactGACTTAAAACCGAAAAAAGATTTGAATAAAGATTCCGAAGTTAAAAAAAGTCTTTCTGAAACTAAgtcaaaaagtaatttattaaaacgtgACAAAGAGCTAGAAAtcaagattaataaaaatgctgCTGTCgataaacaaaatgaaaaattgtcaaaaaataagACTGAAACTGTAGAAATTACAAAAGAACCAAAAACTATCGGCAGTGGTTCAAAAAGTGCTGGAAAAAAAGTGTTACTTCCTAAGCAGCAGTcgacaaaaaacaataacactttaaacaagaaaaaatctaatttagatttgtataataataataacaataaaaaaaaacgatcaaCATCATCATCGTCTGTGACGTCTTCATCGTCTTCCATGTTTAGCATTATTACTAGTCAAACAAAAGAAGAGCTTTTGGAACGTATGGCTGAAAATTTTGATGTCACACCTACTGCTTGTGAAAGTACTGATAAAACAACACTTACAACCATAGCAGAAAGCATCAACAGCacaactatgaaaaaaaatactccaaGCAACGCAAAGGAAAAATGTGTGGAAAACAGTGTGGTAGAAAAAAATGTGCCGAGTAGCAGTATTGTGGTGGAAAGAAAAACATCTAACGAAGTGAATTCAGTGAAGAACAAACAAGAGTTAGAAAACGTTTCAAAAGCAGAAAACTTAGTTGCAGTGCCAAAAgaagaaaatgttattgtgACCTCTGAAAAAGTAGAAAACGTGGTTATGGTTGTCAACAAGGTAGAGAAAACAGAGTCGACGGTAGTGTCATTAAACAAAGCAGAAAAAGTAGAAAACATGGTATTTCAGACCATAGCTAAAGACTTATTCTTGGGACAGCAAAAAGAGATCAAGATAACTATACCTGAATATTTCTCCGGTAAAAACTTCCAGTTGGACAACAGGTTTAAACAAGACGATGGGCTTTCTGTGTTATCCGAAATTTGTAGCGCCCTGCCCAGATTTAATGAACCTTTCGAGTCTAGTGGACAGTTGTTGAACAAAATGCCGGCACCCGGGGAGAGCAGTTTTGTGAAGTATGTCCCACCAACAACCAGCGAAGATGAAAAACCTTCGGTGCCGATATCAACGCCGCCTCCTTCGTTTGAAAGCCGTACTGTCAAAATCGTAAATTTGGCGCGTGGCAACAGCTCGTCCGGAACAAACGACAAAAATGATTTGACTGCATCTTGGAAACGGGCATTCAAAAACGTCAAATTGCCGAAAAATGGAATTGCCTCAGCCGCCGTTTCGGTCGGAAGCAACTTGATTGCTTGGACGAAAAAGAAACAAAACGATAATCAAACACCACCTTTAAAGGTATACCCTGATATAGATAGTGGcacaaaagaaataatttccaATAGTAATTCGATGAAAAACACTCTCCAGTCATCATTGGTAAATGATACCACGGAAAATAAATCTGAACCTTTAACCAAATACCAAAAGACTTGTTGCGGTGAGACAAAAACCATGGAAATGGAAGGCAAGAAGACGGTATCTACAACGGCCACCAACAATGCATCCTATCTAGCCAAGACGACCATATTAAACAGTACTAAGTacgatttgaaatttgaaaaacgtTCCTCGTCAGCTACAACAGCGACCACTGCAGCGCCCATCAGCGTAGAAAAACAAGTCCGCAAAGACGTCGTGGGTGACGTGTCGTCTTCGGACGACCAGAGTCCGGAGAAGAAAATATTCCATCAGCGGCGACTGTCTACTACCCAGTCGTGTAGCGGAAATAGTTCCGACGCCTTTTCGCCTGATAACGAGACGAGTGTTTACGCTTTCCAGCCTGATTTACCGGTAGCCAGCACTCCTTTTCGTCGGAATAAACCACAGTCGCCTGCCAAGTCCAGGACGGTTTCGCCCAACACATCAATCGCTGTGAGCATTGAAAATGATTCTATGGAAGAAAAATCTCACCAGTCCACCGTATCATCAACGACAACAGACGTTGATAGTGAAGAAGGACGGCTTTTTTACATTCCGTTACCAGCTGGAGTTCGGGCACAGCCGATGATCCAAGGCGTCACGGTCAAGTTAGGCACAGAAGGACCACAGAAAAAATTAGTGATGAGTGCTAAGCTGGTAACCAAACCCCCTGCGTCTACAATACCAGTCAGTTCCATATCGCCAAAACCTGAGAGGAAAATCAAACCACTgtgtacaaacaaaattacCAACAGCACCACCCCCGTCGGCACTGTACAACCAACTACCAGAACTGTTCAGCCCCCAAAATGTACCCCTTCAACTTCCAAACAAGTGTTACCATTACCAACACAGCCGCAAATCCCAGAAACGAAAGACGACAAAAAACGTTTACAACAAATCACTACAACTACTAATTCTACTACTACTGCCATTACTTCTGCTAAGGAATCAAAAAAATCGTCCTCCGTATCCGCCACTGACaacaagaaacaaaaaaaGACTGAAAAACAAGTTAACAATAAGAGGAAGTCTAGCGAAAAAGTAGCTTCAAAAAAGAAATCAGCAAAAGAATATTCCGATATGTTGGATGCGCCAACGTTTTATCCGTCTGAAGAAGACTTTAAGGATCctttagaatattttgaaatcatcAAACCTGTTGCTCAAAAATATGGTATATGCAGAGTCGTACCGCCACCTAGTTTTAAgCCGGAATGCAAAGTCAGTGACGACATGCGTTTCACAGCATACAATCAGTATGTGCACAAGATGATGAACCGTTGGGGTCCAAACGTTCGTGAAATGATAGCCATTAAAAAGTATCTGGAAACACAGTCTATAGTCTTGTCCAACCCACCGCTCATTGGTGGCATGGAACTGGATTTACCCAAGCTGTACCACACGGTACAGGAGCTCGGCGGTCTCAAAGAAGTAATTGAGTTGGACAAGTGGTGTCGTGTTGCTGACTTGATGAAGATCCCGAAGAGTGCTCAAGATCGCGTTACTAAACTCGACGACATTTACTGCAAATATCTATTGCCGTACGACACACTCTCGCATGacgaGCGGCAAAAATTAATCACAGAGGTGGATAAAGAGTGGAAACAGATTTGCAAAAAGGGTGATACTGATGATGAGCTGTATGAAGACGTTAATGATTGTATAGCAAAGGGTCGAAGTATCGCATTGAGTGCATATTATCGGGTGGCACGTAATACTATCGCCATGTGGTTCAAGgaacagcaacaacaacaaccgTCAGGCGGTCATTCGTCGTCTACGTCAGCTGCTGCAGCGGGGATAGTTCGGGCTGAAGATGTTGAGTCGCTTTACTGGAAAAATGTCCAGGAAAGGAAAAATCACATTTGCGTGCTGTCCGGGTCAATTGACTCAGGCGCAGAGGGCTATGGATTCCCGACAACTAAGACAGCCACTTTCACCAAACATCCATGGAATCTCAAGGTTCTCACCAACAACCCGGTGTCTGTCCTCAAGTCTCTAGGCCCAGTGATGGGCATGACTGTACCTACCATACACATGGGCATGGTATTCTCGGCATGTTGTTGGTACAAGGATCCGCACGGACTGCCATGGATAGAGTACTTGCATACCGGTGCTGATAAGGTGTGGTATGGCGTGCCATCTGACCAAAGTGACCGTTTTCGGGCAGCTATGAAGCGCCTACTGCCACGGGCTGTAGCTGAAGGTCAGAACCATCACTCATGGTTGGCTGCAGACAGTGGCATGGTGCCACCTAGCTGTTTGCTTGAGCATGGGGTCACGCTTACTCGAACTGTGCAGAACCCGGGCCAATTCCTCATTGTCATGCCTCGTGCTTACACATGCAATGTGTCCACTGGTTATGTTATATCCGAGAGCGTATACTTCACACAGCCTGGTTGGCTTGATGGTGCTGAAAAGATTTTCcaggACTTGCAGAAAAACTGTGAACCGGCTGCCTTTTCATTCGAAAAGCTATTGATAAACATGTCCACAGATTCACGTACACCTCAAAACATACTAAAACAACTGCTAAACATGTTGAGCAACATGAGAGACTGTGAAGTGGCACTTCGAAGTCAGCTGGTTGAAGATTTAGGCCTAAAAGCTTCTGAACGCATTCGGCCCTCATCAACCAAATCAAATGAGCATGACGATGATTATGAGTGTGACGTGTGTCATTCAATTCTTTACATATCAATGGTGAACAATTCGCATGAAGACTGTGACTATTGTTTGAGACATGGCATTgaaattttatcgaaaaaacaCAACCAACTTAAGTATtgcaaatttttatacacttttgACGAGacTGATTTGGATATGATATTAGTAAAACTTCGTGAAAGGattgattcaaaaaaaaagaagacatCTGCCAAAAGTTGA
- Protein Sequence
- MSSNGLDVKKRKLLNNEEAILESSTKKIKVQAQRKFAQNAVIPTSTAQKPIQTPVVSNNVTKPPIKRPNTEDFLTFLCFRGTSLLPPRLDFFNKPQRSLSAQEIAAGKKRRKSTPILPVTNANNPYNVNSVNNESVERKNINQLSQTKFPLSKLGQKVMGRKLVRSSSRYTVRQEALTLRQLALRHVPKIKKSTSKVIKPLVKENIKKKTEKNGKQVSLDGKQIQKLKGRITRSNSLPSIFCPAVNQLRDDKGKWCKGSCSKPSSKASDDSKDVEEERPSRKKTASKNLDHRSNSLGNMKRKTSIVKCKVANKNNRKTRSLASKSKSSDQDNYVVPDKKGDKNLKTVSKSNKANSLIETKPTVDVKRKTSSVDNMKITRESKDIISSTRLRPPRRTKEAATLFMEMLRKDMRCPDEQEEDDTSSVESFPELPNTRINEQRERELKVFSKQNKMEKHQEEQKLSEKKDDKSLSDSKKTKLVNKKKAEKLKKKIEVNNTLEKKKIKEVIESIDFTENSGIASFKRNLRPRRSSTMLDDYIMTDSDEDDMKCKPIIEVTKCEAPKLSNKMTIVAGNSKSQKCKLSTDESVKKNLKINKTDLKPKKDLNKDSEVKKSLSETKSKSNLLKRDKELEIKINKNAAVDKQNEKLSKNKTETVEITKEPKTIGSGSKSAGKKVLLPKQQSTKNNNTLNKKKSNLDLYNNNNNKKKRSTSSSSVTSSSSSMFSIITSQTKEELLERMAENFDVTPTACESTDKTTLTTIAESINSTTMKKNTPSNAKEKCVENSVVEKNVPSSSIVVERKTSNEVNSVKNKQELENVSKAENLVAVPKEENVIVTSEKVENVVMVVNKVEKTESTVVSLNKAEKVENMVFQTIAKDLFLGQQKEIKITIPEYFSGKNFQLDNRFKQDDGLSVLSEICSALPRFNEPFESSGQLLNKMPAPGESSFVKYVPPTTSEDEKPSVPISTPPPSFESRTVKIVNLARGNSSSGTNDKNDLTASWKRAFKNVKLPKNGIASAAVSVGSNLIAWTKKKQNDNQTPPLKVYPDIDSGTKEIISNSNSMKNTLQSSLVNDTTENKSEPLTKYQKTCCGETKTMEMEGKKTVSTTATNNASYLAKTTILNSTKYDLKFEKRSSSATTATTAAPISVEKQVRKDVVGDVSSSDDQSPEKKIFHQRRLSTTQSCSGNSSDAFSPDNETSVYAFQPDLPVASTPFRRNKPQSPAKSRTVSPNTSIAVSIENDSMEEKSHQSTVSSTTTDVDSEEGRLFYIPLPAGVRAQPMIQGVTVKLGTEGPQKKLVMSAKLVTKPPASTIPVSSISPKPERKIKPLCTNKITNSTTPVGTVQPTTRTVQPPKCTPSTSKQVLPLPTQPQIPETKDDKKRLQQITTTTNSTTTAITSAKESKKSSSVSATDNKKQKKTEKQVNNKRKSSEKVASKKKSAKEYSDMLDAPTFYPSEEDFKDPLEYFEIIKPVAQKYGICRVVPPPSFKPECKVSDDMRFTAYNQYVHKMMNRWGPNVREMIAIKKYLETQSIVLSNPPLIGGMELDLPKLYHTVQELGGLKEVIELDKWCRVADLMKIPKSAQDRVTKLDDIYCKYLLPYDTLSHDERQKLITEVDKEWKQICKKGDTDDELYEDVNDCIAKGRSIALSAYYRVARNTIAMWFKEQQQQQPSGGHSSSTSAAAAGIVRAEDVESLYWKNVQERKNHICVLSGSIDSGAEGYGFPTTKTATFTKHPWNLKVLTNNPVSVLKSLGPVMGMTVPTIHMGMVFSACCWYKDPHGLPWIEYLHTGADKVWYGVPSDQSDRFRAAMKRLLPRAVAEGQNHHSWLAADSGMVPPSCLLEHGVTLTRTVQNPGQFLIVMPRAYTCNVSTGYVISESVYFTQPGWLDGAEKIFQDLQKNCEPAAFSFEKLLINMSTDSRTPQNILKQLLNMLSNMRDCEVALRSQLVEDLGLKASERIRPSSTKSNEHDDDYECDVCHSILYISMVNNSHEDCDYCLRHGIEILSKKHNQLKYCKFLYTFDETDLDMILVKLRERIDSKKKKTSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134026;
- 90% Identity
- iTF_01304641; iTF_00135943; iTF_00135101; iTF_01303971; iTF_01305330; iTF_00134026; iTF_01328398;
- 80% Identity
- -