Sgrm011983.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- JARID2
- Assembly
- GCA_003264975.1
- Location
- QEWZ01001368.1:3048519-3065198[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8 2.6e+04 -3.9 0.0 51 68 499 516 483 525 0.69 2 4 0.027 88 4.1 0.0 22 68 965 1011 944 1025 0.81 3 4 1.7e-20 5.6e-17 62.4 0.0 8 89 1525 1604 1519 1604 0.92 4 4 4.7 1.5e+04 -3.1 0.0 49 63 1618 1630 1614 1645 0.75
Sequence Information
- Coding Sequence
- ATGTCGTCGAATGGGTCGGATGCAAAGAAACGCAAACTGCTGAACAATGAAGAAGCTATTCTTGAGTCGAGTACTAAAAAAATCAAGGTACAAGCACAGCGTAAATTTGCCCAAAATGCTGTGATACCCACCAGCACTGCACAAAAACCTATTCAGACTCCAGTAGTGCCTAATAATGTGACAAAACCACCAATTAAGCGGCCAAATACTGAAGACTTCCTTACCTTCCTTTGTTTTAGagGTACAAGTTTATTACCTCCACGACTAGATTTCTTCAATAAACCTCAACGCTCTCTATCGGCACAAGAGATTGCTGCtggaaaaaAAAGAAGAAAAAGCACTCCTATACTGCCAGTAACTAATGCAAATAATCCGTATAATGTAAATAGTGTAAATAATGAATCAATTGAACGAAAAAACATTAGTCAGTTATCGCAGACCAAATTTCCATTATCCAAACTAGGACAGAAAGTTATGGGTCGAAAGTTGGTAAGATCCAGTTCAAGATATACTGTTAGACAAGAAGCTCTCACATTACGTCAATTAGCTCTTCGTCATgttccaaaattaaaaaaatccacCTCAAAAGTTATTAAACCTTtagtaaaagaaaataataaaaaaaaaactgagaaAAATGGAAAACAAGTATCATTAGACGGTAAGCAAATACAAAAGTTGAAAGGCCGTATAACTCGATCAAATTCTTTACCAAGTATATTTTGTCCTGCGGTAAATCAACTTCGagatgatAAAGGAAAATGGTGTAAAGGGAGTTCTAGTAAACCTTCTTCAAAAGCATCTGATGACTCAAAAGATGTTGAAGAAGAAAGACCATCGAGAAAAAAGACTGCATCAAACAATTTAGATCATAGAAGTAATAGTCTGGGTAACATGAAACAAAAGACTAGTATTGTTAAATGTAAAGtggcaaataaaaataacagaaaaactaGAAGTTTAGCGAGTAAATCTAAGAGCAGCGACCGAGATAATTATGTTGTTTCTGATAAGAAGGGTGATAAGAATTTGAAGACTGTATCCAAGAGTAACAAAGCAAACAGTTTAATTGAAACAAAATCAACAATAGACGTGAAAAGAAGAACATCTTCAGTGGATAATATGAAAACAACTCGTGAGAGTAAAGACATAATTAAttCAACCCGTTCAAGGCCCCCTAGAAGAACTAAAGAAGCTGCTACTTTATTCATGGAAATGTTACGAAAAGATATGCGGTGCCCTGATGAGCAAGAAGAAGATGATACATCATCTGTTGAGAGTTTTCCTGATCTTCCCAATACACGAATAAATGaacAACGTGAACGTGAATTGAAAGTGTTTTCCAAGCAAAACAAAATGGAAAAACATCAAGAAGAACATAAATTATCTGAAAAAAGAGATGATAAACCATTGTCTGATAGTAAAAAGACAAAATTAATTGACAAGAAGAAAGtagaaaagttgaaaaaaaagtttgaggaaaATAATACTCTGGAAAAGAAAAAGACAAAAGAAGTTATAGAGTCAATTAACTTTACTGAAAACAGTGGAGCTGTGTCATTTAAAAGGAATCTGAGGCCTCGACGCTCTTCTACCATGTtagatgattatattatgactgATTCGGATGAGGACGATATGAAATGTAAATCCGTTGTTGAGGTGACAAAATGTGAAGCTCCTAAATCGTCGAATAAAGTGACAATTGTGGCAGGAAACTCAAAATCTCAAAATTGTAAGTTAAGTACTGACgaatctgttaaaaaaaatcttaaaattaataagactGACTTAAAACCGAAAAAAGATTTGAATAAAGATTCTGAAGTTAAAAAAAGTCTTTCTGAAACTAAgtcaaaaagtattttattaaaacgtgaCAAAGAGCTAGAAatcaagaataataaaaatggtaccgtcgataaaaaaaatgaaaaattgtcaaaaaataagactgaaattttagtaattactaaagAACCAAAAACTACCGgcagtgttttaaaaaatgccGGAAAAAAAGTGCCACCTCCTAAGCAGCAGTcaacaaaaaatgaaaacgcTTTGAACaagaaaaaatctaatttagatctgtacaataataataataaaaagaaacgaTCTACATCATCGTCTTCGGTGACGTCTTCATCATCTTCCATGTTTAGCGGTATTACTAGTCAAACGAAAGAAGAGCTTTTGGAACGTATGGCCGAAAATTTTGATGCCACATCTACCGCTTGCGAGGGTGCCGATAAAGCAATGCTGTCAAATACAGCGGATAACATCAACAGcgcaactataaaaaaaaatgtacaaagcAATGCGAAGGAAAAACGTGCAGATAGTAGTATggtagaaaaaaatatgcagAGTGGTAGTATTGTTgcggaaaaaaaaatagccaACGAAGTGAATTCAGTAAAGAACAAAcaagagttagaaaaagtttcaaaaacagaaaatttagTTGCAGTTCCAAAAGAAGAAAATGTCATCGAGACCGCTGAAAAAGTAGAAAATGTGGTTATGGTTGTCGACAAGGTAGAGAAAACGGAGTCTGTGGTAGTGCCATTGAATAAAGTAGAAAAAGTAGAAAACATGGTGTTCCAGACCATAGCTAAAGACCTATTCTTGGGGCAGCAAAAAGAGATCAAGATCACCATACCCGAATACTTTTCCGATAAAAACTTCCAGTTGGACAACAGGTTTAAACAAGACGATGGGCTTTCAGTGTTATCTGAAATTTGTAGCGCCTTGCCCAGATTTAATGAACCTTTTGTGTCTAGTAGTCAGTTGTTAAACAACATGCCAACAACCAGTGACAGCAGTTTCGTGAAGTATGTTCCGCCAACCATCAGTGAAGACGAAAAGCCTCCGGTGCCGACATTGATGCCGCCGTCGTTTGAAAGCCGCACCGTCAAAATCGTAAATTTGGCGCGCAGTAGCAGCTCGTCCGGGACAAACGACAAAAATGATTTGGCTGCGTCTTGGAGGCGGGCGTTCAAAAACGTCAAATTGCCGAAAAATGGAATCGCCTCTGCCGCCGTTTCGGTTGGTAACAACTTGATTGCTTGGACGAAAAAGAAACAAAACGACAATCAAACCCCACCATCAAAGACATACGCTGATGGTATAGATGTTGGCACAAAAGAAATAGTTTCCAATAGTAATTTGATGAAAAACTCTCTCCAATCATCATCACTGATAAATGGTACTACGGAAAAGAAATCTGAACCTTCGTATAAATGCCAAAAGACTTGTTGCGGTGAAACCAAAACCTTGGAAATTTTGGAAGGCAAAAAGACGATGTCGTCAACAACAGCCACCAACAATGCGTCTTATTTGGCCAAGACGACCATATTAAACAGTACGAAGTAcgatttgaaatttgaaaaacgtTCATCGTCGGCTACAACAGCGACTACTACAGCGCCCATCAGTGTcgaaaaacaacaacaaatccGCAAAGACGTCGTAGGTGACGTTTCGTCTTCGGACGATCAGAGTCCGGAGAAGAAGATATTCCATCAACGGCGGCTGTCTACCACCCAGTCATGTAGCGGAAATAGTTCCGACGCTTTTTCACCCGATAACGAGACTAGTGTTTATGCTTTCCAGCCCGATTTGCCGGTTGCCAGCACTCCTTTTCGTCGGAACAAACCACAATCGCCTGCCAAGTCCAGGACGGTTTCGCCTAACACGTCAATCgctGTGAGTATTGAAAATGATTCTATGGAAGAAAAATCCCATCAGTCCACCGTGTCATCAACGACAACGGATGTTGATAGCGAGGAAGGACGGCTTTTTTACATTCCATTACCGGCCGGTGTTCGGGCACAGCCGATGATTCAAGGCGTCACGGTGAAGCTTGGTACAGAAGGACCACAGAAAAAATTGGTGATGAGCGCTAAGCTAGTAACCAAACCCCCTGCTTCTACGATACCAGTCAGCTCCATATCGCCAAAACCTGAGCGGAAAATCAAACCGCTGTGCACGACCAAAATTACCAATAGCACTACCCCCGTTGGCACTGTGCAACCAACTACTAGAACTGTTCAACCTCCAAAATGTACCCCCTCGACTTCAAAACAAGCGTTACCATTACTGCCACAGCCGCAAATCCCGGAAACGAAAGACGATAAGAAACGGTTACAACAAATCACTACAACTACTAATTCTACTACTACTGCCATTACTTCTGCTAAGGAATCGAAAAAATCGTCATCCGTATCCGCCACTAACAACAAGAAACAAAAAAAgaCTGAAAAACAAGTTAGCAATAAAAGGAAGTCTAGTGAAAAAGTAGCTTTGAAGAAGAAATCGTCTAAAGAATATTCCGACATGTTGGATGCGCCGACGTTTTATCCATCCGAAGAAGACTTTAAGGATCCtttagaatattttgaaataatcaaacCCGTTGCTCAAAAATACGGCATATGCAGAGTCGTGCCGCCACCTAGTTTTAAGCCGGAATGTAAAGTCAGCGACGACATGCGTTTCACGGCATATAACCAATATGTGCATAAGATGATGAACCGTTGGGGCCCAAACGTTCGCGAAATGATAGCTATGAAAAAGTATCTGGAAACACAGTCGATAGTCTTGTCCAACCCTCCGCTAATTGGTGGCATGGAACTGGATTTACCCAAGCTGTACCACACGGTACAGGAGCTTGGTGGACTTAAAGAAGTGATCGAGCTGGATAAGTGGTGTCGTGTTGCCGACTTGATGAAGATCCCGAAAAGTGCTCAAGATCGCGTCACTAAACTTGATGACATTTACTGCAAATATCTATTGCCTTATGACACACTCTCACACGATGAACGTCAAAAATTGATCGCAGAGGTGGATAAAGAGTGGAAACAGATTTGCAAAAAAGGTGATACTGATGATGAGCTGTATGAAGACGTCAATGATTGTATAGCAAAgGGTCGAAGTATCGCATTGAGCGCTTATTACCGGGTTGCGCGCAACACTATCGCCATGTGGTTTAAAgaacagcagcaacaacaaccgTCAGGCGGCCACTTGTCATCTACGTCAGCAGGAACGGCTGCAGTGGTCCGGGCTGAAGACGTTGAGTCACTCTACTGGAAAAATGTGCAGGACAGAAAGAACCACATTTGCGTGCTGTCCGGGTCAATCGACTCTGGCGCAGAGGGCTATGGATTCCCAACGACCAAAACAGCCACTTTCACCAAACACCCGTGGAATCTCAAGGTTCTCACCAACAATCCGGTGTCAGTGCTCAAGTCCCTGGGCCCAGTGATGGGCATGACCGTGCCCACCATACACATGGGCATGGTATTTTCGGCATGCTGTTGGTACAAGGACCCACATGGACTACCATGGATTGAGTACCTGCATACTGGTGCTGACAAAGTGTGGTATGGTGTGCCGTCTGATCAAAGTGACCGGTTTCGGGCAGCCATGAAGCGCCTGCTGCCGCGGGCTGTAGCAGAAGGCCAGAACCATCACTCATGGCTAGCTGCGGACAGTGGTATGGTGCCACCTAGTCGTTTGCTGGAGCATGGCGTCACCCTTACCCGAACCGTGCAAAATCCAGGCCAGTTCCTTATTGTCATGCCGCGCGCTTATACATGCAATGTGTCCACTGGTTATGTTATATCTGAGAGTGTGTACTTCACACAGCCTGGTTGGCTTGACGGTGCCGAGAAGATTTTTCAGGACTTGCAGAAAAATTGTGAACCGGCCGCCTTTTCGTTTGAAAAGCTTCTGATAAACATGTCCACAGATTCACGTACACCTCAAAACATACTAAAACAACTGCTAAATATGTTGAGCAATATGAGAGACTGTGAAGTGGCGCTTCGAAGTCAGCTGGTAGAGGACTTAGGCCTAAAGGCTTCCGAACGCATTCGGCCCACAACATCCAAATCAAATGAGAATAACGATGATTATGAGTGTGATGTGTGTCATTCAATTCTTTACATATCAATGGTGAACAATTCGCATGAAGACTGTGACTATTGTCTGAGACATGGCATTGAGATTTTATCGAAAAAACACAACCAACTCAAGTATTGCAAGTTTCTATACACCTTTGACGAGactGATTTGGATATGATATTAGTAAAACTTCGAGAAAGGATtgattcaaaaaaaaagaagacATCTACCAAAAGTTGA
- Protein Sequence
- MSSNGSDAKKRKLLNNEEAILESSTKKIKVQAQRKFAQNAVIPTSTAQKPIQTPVVPNNVTKPPIKRPNTEDFLTFLCFRGTSLLPPRLDFFNKPQRSLSAQEIAAGKKRRKSTPILPVTNANNPYNVNSVNNESIERKNISQLSQTKFPLSKLGQKVMGRKLVRSSSRYTVRQEALTLRQLALRHVPKLKKSTSKVIKPLVKENNKKKTEKNGKQVSLDGKQIQKLKGRITRSNSLPSIFCPAVNQLRDDKGKWCKGSSSKPSSKASDDSKDVEEERPSRKKTASNNLDHRSNSLGNMKQKTSIVKCKVANKNNRKTRSLASKSKSSDRDNYVVSDKKGDKNLKTVSKSNKANSLIETKSTIDVKRRTSSVDNMKTTRESKDIINSTRSRPPRRTKEAATLFMEMLRKDMRCPDEQEEDDTSSVESFPDLPNTRINEQRERELKVFSKQNKMEKHQEEHKLSEKRDDKPLSDSKKTKLIDKKKVEKLKKKFEENNTLEKKKTKEVIESINFTENSGAVSFKRNLRPRRSSTMLDDYIMTDSDEDDMKCKSVVEVTKCEAPKSSNKVTIVAGNSKSQNCKLSTDESVKKNLKINKTDLKPKKDLNKDSEVKKSLSETKSKSILLKRDKELEIKNNKNGTVDKKNEKLSKNKTEILVITKEPKTTGSVLKNAGKKVPPPKQQSTKNENALNKKKSNLDLYNNNNKKKRSTSSSSVTSSSSSMFSGITSQTKEELLERMAENFDATSTACEGADKAMLSNTADNINSATIKKNVQSNAKEKRADSSMVEKNMQSGSIVAEKKIANEVNSVKNKQELEKVSKTENLVAVPKEENVIETAEKVENVVMVVDKVEKTESVVVPLNKVEKVENMVFQTIAKDLFLGQQKEIKITIPEYFSDKNFQLDNRFKQDDGLSVLSEICSALPRFNEPFVSSSQLLNNMPTTSDSSFVKYVPPTISEDEKPPVPTLMPPSFESRTVKIVNLARSSSSSGTNDKNDLAASWRRAFKNVKLPKNGIASAAVSVGNNLIAWTKKKQNDNQTPPSKTYADGIDVGTKEIVSNSNLMKNSLQSSSLINGTTEKKSEPSYKCQKTCCGETKTLEILEGKKTMSSTTATNNASYLAKTTILNSTKYDLKFEKRSSSATTATTTAPISVEKQQQIRKDVVGDVSSSDDQSPEKKIFHQRRLSTTQSCSGNSSDAFSPDNETSVYAFQPDLPVASTPFRRNKPQSPAKSRTVSPNTSIAVSIENDSMEEKSHQSTVSSTTTDVDSEEGRLFYIPLPAGVRAQPMIQGVTVKLGTEGPQKKLVMSAKLVTKPPASTIPVSSISPKPERKIKPLCTTKITNSTTPVGTVQPTTRTVQPPKCTPSTSKQALPLLPQPQIPETKDDKKRLQQITTTTNSTTTAITSAKESKKSSSVSATNNKKQKKTEKQVSNKRKSSEKVALKKKSSKEYSDMLDAPTFYPSEEDFKDPLEYFEIIKPVAQKYGICRVVPPPSFKPECKVSDDMRFTAYNQYVHKMMNRWGPNVREMIAMKKYLETQSIVLSNPPLIGGMELDLPKLYHTVQELGGLKEVIELDKWCRVADLMKIPKSAQDRVTKLDDIYCKYLLPYDTLSHDERQKLIAEVDKEWKQICKKGDTDDELYEDVNDCIAKGRSIALSAYYRVARNTIAMWFKEQQQQQPSGGHLSSTSAGTAAVVRAEDVESLYWKNVQDRKNHICVLSGSIDSGAEGYGFPTTKTATFTKHPWNLKVLTNNPVSVLKSLGPVMGMTVPTIHMGMVFSACCWYKDPHGLPWIEYLHTGADKVWYGVPSDQSDRFRAAMKRLLPRAVAEGQNHHSWLAADSGMVPPSRLLEHGVTLTRTVQNPGQFLIVMPRAYTCNVSTGYVISESVYFTQPGWLDGAEKIFQDLQKNCEPAAFSFEKLLINMSTDSRTPQNILKQLLNMLSNMRDCEVALRSQLVEDLGLKASERIRPTTSKSNENNDDYECDVCHSILYISMVNNSHEDCDYCLRHGIEILSKKHNQLKYCKFLYTFDETDLDMILVKLRERIDSKKKKTSTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134026;
- 90% Identity
- iTF_00972837;
- 80% Identity
- -