Atri013166.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- lilli
- Assembly
- GCA_952773225.1
- Location
- OX731549.1:82213578-82227678[+]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-05 1.9 8.2 8.3 44 128 14 98 11 112 0.56 2 2 9.7e-09 0.00025 21.0 0.3 327 381 176 231 164 239 0.79
Sequence Information
- Coding Sequence
- ATGTGGTATGTCTGGTTGCAGGTTAACCCAGACGCGCGGGACAGCACGACGCAGCAGATCCAATCGAAACTAGGCAACTATTCTCTGGTGAAGCATCTCCTGGACGAGCCGAAGCGGCTGATCGGGATCGAGGGTGTGCCGCCGAGCCCTGCCCCGTCCCCAGCACCCTCGTCCCTGCGAACGAGTTCCAGCACGGTCGGCTCAAATTCCAGGAGCTCGCCCTCCGGCCAAGAATTCAAGAAACCCGGAGGACCGAGGACAGGctcgtcctcgtcctcctcgtcgtcgtcgtccggTCATCAGCGCGGCGGCTTCGTGAAACCGGCCGACGGGAAGCCGCCGTACGGGGGCAGGGGTGGCTACCCCGGCCAGCCCGTCAAGCACGGGGGCAATAGCAACGATCATCGTAGCCACGGTTTATTACCCGCCAAAGGACCGCCCCCGAACTCGCCCGGGAACGGCACGCTCGTTGGCAATTCGAATATCGGGAATTCCAGCGGCAGCAGACTTCACTGTGCCGGCAGCAGACTGTCCAGGTTACCTCTCGATAACGGAACCAATTCGAGGCCCGGCCCAACCGAGAACTCTGCTGACTTGGAGAACATCCTGAAGGAGATGACCATGCCGCCCACACCTCTGACGGCCATCGCCCAGACACCGAGGAAGGAGCCCGAGTCAAAGTTCACGTTCAATCCCGTGCTGGCGAAGCTGACCGAAGTGCCGCCTCCGGAAGCCACGAAGCCTCGTAAGTAA
- Protein Sequence
- MWYVWLQVNPDARDSTTQQIQSKLGNYSLVKHLLDEPKRLIGIEGVPPSPAPSPAPSSLRTSSSTVGSNSRSSPSGQEFKKPGGPRTGSSSSSSSSSSGHQRGGFVKPADGKPPYGGRGGYPGQPVKHGGNSNDHRSHGLLPAKGPPPNSPGNGTLVGNSNIGNSSGSRLHCAGSRLSRLPLDNGTNSRPGPTENSADLENILKEMTMPPTPLTAIAQTPRKEPESKFTFNPVLAKLTEVPPPEATKPRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00086270; iTF_00140578; iTF_01089986; iTF_00233220; iTF_00219789; iTF_00231309; iTF_00228657; iTF_00227958; iTF_00303021; iTF_01066932; iTF_01066246; iTF_01067601; iTF_01065560; iTF_01069659; iTF_01068288; iTF_01070356; iTF_00863261; iTF_00229343; iTF_00216385;
- 90% Identity
- iTF_01069659;
- 80% Identity
- -