Bsko000563.1
Basic Information
- Insect
- Bombus skorikovi
- Gene Symbol
- -
- Assembly
- GCA_014737355.1
- Location
- JACXIH010000022.1:2043283-2062736[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0012 24 4.1 9.4 44 129 51 142 49 153 0.63 2 2 1.7e-08 0.00033 20.2 0.2 327 381 217 272 203 287 0.81
Sequence Information
- Coding Sequence
- ATGGATCAGCCAAGGGATATACACGGTGGCGTGGCCGTAAGTGGATCAAAGCGGTATAGCTCGTCCCGTGAATCGCTTTTATCCATTCACAGGAGGAATTTGCACGAACCGAGAACGCGTGCGTGCGCCCGTGTGAGTCCAGACGCCCGAGACAGTACGACGCAGCAAATTCAATCGAAACTAGGCAACTATTCTCTGGTGAAGCATCTTCTGGACGAGCCGAAACGGCTGATCGGCATCGAGGGTGTACCGCCGAGCCCTGCTCCGCCCCCGGCCGTGTGCATTCGACTGAGTTCCAGTTCGATGGGCGCAAATTCCAGAAGCTCGCCCTCCTCCCAGGAATTCAAGAAACCCGGAGGACCGAGAACCGATGCCGGCGGCTCGTCCTCGTCGACTTCGTCGTCGTCCTTGTCGTCGAGTCATCAACGCGGCGGTTTCGTGAAACCGGCCGATGGAAAGCCGCCGTACGGAGGCCGGGGTAGTTACCCCGGTCAGCCGGTGAAGCACGGGGGCAACAGCAACGATCATCGGAGCCACGGTTTATTACCCGCCAAAGGGCCGCCCACGAATTCACCCGGGAACGGTACGCTCTTTGGCAATTCGAATATCGGGAATTCCAGCGGCAGCAGGCTTCACGCTATCAGCAGCAGACTGTCCAGGTTACCTCTCGATAACGGAACAAGTTCGAGGCCTGGTCCAGCCGAGAATTCCGCGGACGTAGAGAATATTTTAAAGGAAATGTCCATGCCGCCCACGCCTCTGACGGCTATCGCCCAGACGCCGAGAAAGGAGCTGGAGTCGAAGTTCACGTTCAATCCTGTGCTAGTAAAGTTGACCGAGGTGACACCGCAGGAAGCCACGAAGCCTCGTAAGTAA
- Protein Sequence
- MDQPRDIHGGVAVSGSKRYSSSRESLLSIHRRNLHEPRTRACARVSPDARDSTTQQIQSKLGNYSLVKHLLDEPKRLIGIEGVPPSPAPPPAVCIRLSSSSMGANSRSSPSSQEFKKPGGPRTDAGGSSSSTSSSSLSSSHQRGGFVKPADGKPPYGGRGSYPGQPVKHGGNSNDHRSHGLLPAKGPPTNSPGNGTLFGNSNIGNSSGSRLHAISSRLSRLPLDNGTSSRPGPAENSADVENILKEMSMPPTPLTAIAQTPRKELESKFTFNPVLVKLTEVTPQEATKPRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00088814;
- 90% Identity
- iTF_00233220;
- 80% Identity
- -