Ccal024468.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000010.1:8149886-8163530[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-08 0.0024 17.8 0.8 44 130 18 105 15 146 0.55 2 2 3.6e-07 0.0098 15.8 0.1 341 372 194 225 176 234 0.71
Sequence Information
- Coding Sequence
- ATGTTTGACAGTCCCGATCGAGTTTTCGCTGCCGTGAACCCCGACGCCCGGGATAGCACGACTCAGCAGATCCAATCGAAACTAGGCAACTATTCACTGGTGAAGCATCTCCTGGAGGAGCCTAAACGACTGATCGGCATTGAGGGTGTACCACCGAGTCCTGCCCCGTCTCCGTCGCCCACGCCTGTGCGAACGAGTTCCAGCTCGGTTGTCTCGAATTCCAAGAGTTCTCCATGTTCCCAGGAATTTAAGAAACCCGGAGGAATGAGGATTAGTAACGGTTCTTCCTCAACGACGTCGTCAAATCATCAACGGAGTGGTTTCGTGAAACCCGCCGACGGAAAACCGCCGTACGGCGGCAGGGGTAGCTACCCCGGCCAACCGGTGAAGCACAGTGGGAACAGCAACGATCATCGTAGCCACGGTTTATTAACAGCCAAAGGCCCACCCCTGAATTCACTCGGGAACGGTCCGCTCGTTGGCAATTCGAATATTGGGAATTCcggcggcagcaggcttcactgtgtcggtagcagaCTGTCCAGGTTACCTCTCGATAACGGAACGATTTCGAGGCCCGCTCTCACTGAAAATTCAGCCGATGTGGAGAATATTCTGAAGGAAATGACGATGCCGCCCACGCCGCTGACGGCAATCGCCCAAACGCCGAGAAGGAGCTCGAGTCGAAGTTCACGTTCAATACGGTGCTAG
- Protein Sequence
- MFDSPDRVFAAVNPDARDSTTQQIQSKLGNYSLVKHLLEEPKRLIGIEGVPPSPAPSPSPTPVRTSSSSVVSNSKSSPCSQEFKKPGGMRISNGSSSTTSSNHQRSGFVKPADGKPPYGGRGSYPGQPVKHSGNSNDHRSHGLLTAKGPPLNSLGNGPLVGNSNIGNSGGSRLHCVGSRLSRLPLDNGTISRPALTENSADVENILKEMTMPPTPLTAIAQTPRRSSSRSSRSIRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00088814;
- 90% Identity
- -
- 80% Identity
- -