Bson007978.1
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- lilli
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000007.1:14848519-14867127[+]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.012 3.3e+02 0.8 12.1 44 124 19 104 17 113 0.50 2 2 3.1e-09 8.5e-05 22.6 0.4 326 381 184 240 169 254 0.85
Sequence Information
- Coding Sequence
- ATGGATCAGCCAAGGGATATACACGGTGGCATGGCCGTGAGTCCAGACGCTCGAGACAGTACGACACAGCAAATTCAATCGAAACTAGGCAACTATTCTCTGGTGAAGCATCTTCTAGACGAGCCGAAACGGCTGATCGGCATCGAGGGTGTACCGCCGAGCCCTGCTCCGCCCCCAGCCGCGTGTATTCGGCTGAGTTCCAGTTCGATCGGCGCAAATTCCAGGAACTCGCCCTCCTCCCAGGAATTCAAGAAACCCGGAGGACCGAGAACCGATGCTAGTGGTTCGTCCTCGTCGACTTCGTCGTCGTCCTTGTCGTCGGGTCATCAACGCGGTGGTTTTGTGAAACCGGCCGATGGAAAGCCACCGTACGGAGGCCGAGGTAGCTATCCCGGCCAGCCGGTAAAGCACGGGAGCAATAGCAACGATCATCGGAGCCACGGTTTATTACCCGCCAAAGGGCCGCCCACGAATTCACCCGGGAACGGTACGCTCTTTGGCAATTCAAATATCGGGAATTCCAGCGGCAGCAGGCTTCACGCTATCAGCAGCAGACTGTCCAGGTTACCTATCGATAACgGAACAAGTTCGAGGCCTGGTCCAGCCGAGAATTCCGCGgatgtagaaaatattttaaagGAAATGTCCATGCCGCCCACGCCTCTGACGGCTATCGCCCAGACGCCGAGAAAGGAGCCGGAGTCGAAGTTCACGTTCAACCCTGTGCTAATAAAGTTGACCGAGGTGACGCCGCAGGAAGCCACGAAGCCTCGTAAGTAA
- Protein Sequence
- MDQPRDIHGGMAVSPDARDSTTQQIQSKLGNYSLVKHLLDEPKRLIGIEGVPPSPAPPPAACIRLSSSSIGANSRNSPSSQEFKKPGGPRTDASGSSSSTSSSSLSSGHQRGGFVKPADGKPPYGGRGSYPGQPVKHGSNSNDHRSHGLLPAKGPPTNSPGNGTLFGNSNIGNSSGSRLHAISSRLSRLPIDNGTSSRPGPAENSADVENILKEMSMPPTPLTAIAQTPRKEPESKFTFNPVLIKLTEVTPQEATKPRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00088814;
- 90% Identity
- iTF_00233220;
- 80% Identity
- -