Bsor013968.1
Basic Information
- Insect
- Bombus soroeensis
- Gene Symbol
- lilli
- Assembly
- GCA_014737365.1
- Location
- JACXIL010000251.1:3592384-3611122[+]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00028 5.3 6.2 5.7 44 127 19 108 17 121 0.53 2 2 5.3e-08 0.001 18.5 0.2 324 381 182 240 164 254 0.82
Sequence Information
- Coding Sequence
- ATGGATCAGCCAAGGGATATACACGGTGGCATAGCCGTGAGTCCAGACGCTCGAGACAGTACGACGCAGCAAATTCAATCGAAACTAGGCAACTATTCTCTGGTGAAGCATCTTCTGGACGAGCCGAAACGGCTGATCGGCATCGAGGGTGTACCGCCGAGCCCTGCTCCGCCCCCGGCCGCGTGCATTCGACTGAGTTCCAGTTCGGTCGGCGCAAATTCCAGGAGCTCGCCCTCCTCCCAGGAATTCAAGAAACCCGGAGGACTGAGGCTCGATGCTGGTGGTTCGTCCTCGTCGACTTTGTCGACGTCCTCGTCGTCGAGTCATCAACGCGGCGGTTTCGTGAAACCGGCCGATGGAAAGCCGCCGTATGGAGGCCGGGGTAGTTACCCCGGTCAGCCGGTAAAGCACGGGGGCAACAGCAACGATCATCGGAGCCACGGTTTATTACCCGCCAAAGGGCCACCCACGAATTCACCCGGGAACGGTACGCTGTTTGGTAATTCGAATATCGGGAATTCCAGTAACAGCAGGCTTCACTCTGCTGGCAGCAGACTGTCCAGGTTACCTCTCGATAACGGAACAAGTTCGCGGCCTGGTCCAACCGAGAATACCGCGGATGTAGAGAATATTTTAAAGGAAATGTCCATGCCGCCCACGCCTCTGTCGGCTATCGCCCAAACGCCGAGAAAGGAGCTGGAATCCAAGTTCACGTTCAATCCTGTGCTAATAAAGTTGACCGAGGTGACGCCGCAGGAAGCCACGAAGCCTCGTAAGTAA
- Protein Sequence
- MDQPRDIHGGIAVSPDARDSTTQQIQSKLGNYSLVKHLLDEPKRLIGIEGVPPSPAPPPAACIRLSSSSVGANSRSSPSSQEFKKPGGLRLDAGGSSSSTLSTSSSSSHQRGGFVKPADGKPPYGGRGSYPGQPVKHGGNSNDHRSHGLLPAKGPPTNSPGNGTLFGNSNIGNSSNSRLHSAGSRLSRLPLDNGTSSRPGPTENTADVENILKEMSMPPTPLSAIAQTPRKELESKFTFNPVLIKLTEVTPQEATKPRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00088814;
- 90% Identity
- iTF_00233220;
- 80% Identity
- -