Agra004766.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aldrichina grahami
Gene Symbol
su(Hw)
Assembly
None
Location
Contig34:1622079-1626181[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00073 0.03 14.3 2.1 1 20 153 172 153 174 0.94
2 12 6.3e-06 0.00026 20.8 0.4 3 23 225 246 223 246 0.93
3 12 0.066 2.7 8.2 0.4 1 23 252 274 252 274 0.94
4 12 1e-05 0.00042 20.1 2.6 1 21 281 301 281 302 0.95
5 12 1.4e-05 0.00057 19.7 2.2 3 23 315 335 313 335 0.96
6 12 1.6e-06 6.4e-05 22.7 3.4 1 23 346 368 346 368 0.98
7 12 6.3e-05 0.0026 17.7 0.8 1 23 374 396 374 396 0.97
8 12 1.4e-05 0.00055 19.8 1.0 1 23 402 424 402 424 0.99
9 12 3.2e-06 0.00013 21.7 0.9 1 23 430 452 430 452 0.97
10 12 8.5e-06 0.00035 20.4 0.7 1 23 456 478 456 478 0.98
11 12 0.0012 0.048 13.7 0.9 2 23 492 515 491 515 0.92
12 12 1.4 56 4.0 0.2 3 23 530 551 528 551 0.93

Sequence Information

Coding Sequence
ATGCTAGCAGTAGTTATTGAAAAAAATCTAATATCAGCTAAAAAATTTTTCAACACCATGAGTTCGAAAAAAGATAATCCTGAATCGTCCACTAGACGTTCTAGTTCGGGTATTAAGATATTAAACGATGAAAAAATAACAACACTATTACCTTTAAAAATACCTGTAATGACTTCGGTGCCCTTGTCGCCTCCCAAACAAATCACCTTATCTATTGCCAAACCCAAGAAAGCTTTAAAACAAAAAAACATGGATCATTATGTGATGAAGACGGTCAAAGGAGAGAAAAATACTGATAACGGCTTAGAAGAAAGCGAAACAATTGATTTTATATTAGCGGAGAGTAATGAAGACGAAGTATCAAAGCAGAGTGGAGAAATAACGGAAGAACTGCATCTGAGTGATGATGATGATCGTGATTCAACATTTACCGGTTCAACTCAAGAGATTGTCGAACATGTTTGCGGAAAATGCTATAAGACTTTTAGGCGAATAAAGAGTCTCAAAAAACATCTCGACTATTGTCGATTTGATAGTGGTTATCACATTCGAAAAGCGGAAATGTTAAAAAACTTGGAGAAAATTGAAAAAGATGCCATAATAATGGAGAATAAGGACGTCTGTTTTTGTTGTGGTGAAAGTTATGATACATTTCATTTGGGCCACATTAATTGTCCCGATTGTCCTAAATCGTTTAAAACCCAAATGAGCTATGAACGTCATATATTTATAACACATTCTGAGTTCGATGATCACCCCTGCAGTATTTGCAATGCAAAATTGCGCAGTGCTAATCTATTGAAACTACACGAAGAGCAGCACCGTAATCGAGGCAAACCATTTGCTTGCAAGCTTTGTGGCAAAGATTTTACCCGTTCATATCATTTGAGTCGTCATCAGAAGTTTTCATCATGTTCGGCCAATGAAAATGATACTATGCATTGTAAAGTCTGCAATAAAGCATTCTATCGTTTGGATAACTTAAGAGCTCATCTGAAGCAGCATTTGGGTACTCAGCAAACCAAGAAATCGGAATACATGTGTCCAATATGTAAAAAATGTTTCTATAGTTTGTCAACTTTAAATATTCACACGCGTACTCATACGGGCGAAAAACCATTCGATTGTGATTTATGTGAGAAAAAGTTTCCATCATTGGTTGCTTTGAAGAAGCATAGACGTTATCACACCGGAGAAAAACCCTATACCTGTTCAGTGTGTAAACAATCGTTTGCAGTCAAGGAAGTATTAAATCGTCATATGAAACGTCATACGGGCGAAAGACCTCATGTTTGCAGTGAATGTGGTAAAAGTTTTATACAAGGCACTCAACTTCGTACTCACATCAAGATCCATCTAAGGCCCTACGAATGTGATCAATGTCCAGAGAAATACAGAACAGAAAAGCAATTAGAGAAACATATGAAAGAGCATAGTGCAACAAACCGAAGGGGACGTATACGAATGGCCAATAAATGTCTGATATGTAAGAAGGGCTTTAAAACTGAACTGGAGTTTAACAATCACATGCAGATGGGTACTCATATAACTCCTGCTCAAAGGCGTAAAATAAAAAATCGTACCGATTGCGCTGTTTGCAAAGAAAATTTCGATTCTGTACAAAGTCTTCAATTTCATATACTCAAAGTTCACCAAGAAGATCCCGAGACGTTTATCAATGAAGACCCCTTCGGAACTCCCTCTCGAGCTAAGGACATTGATTCTATGCTAATGCCAGCACCTAAAGTTATAAAAATTGAAGATGCACAGGGTCAACGCATAGAATTTGTTACCACCAACAGTGAGGGTAAAATATTAAATACCAGCATTCAGGGACTGAATCAACAACAAATCTTAAGTCCAGACAGCAAAACAGAGGATTCGAATAAAGTGCGAATTTTGGAGCAATATGTAATCGACGATAGTCCTTCAACATCAGCAAGTGCTGGTGGCAAACGTACCATATTCTTGACAAATGAAGCTTATACAGTTATACCGCTAGAATCAGACGGCGGCTTTATAGAGCCCATTACTACAAACACATTGCCAAGTAATATTGTAAGTCCTGAATGCAAAAAGGAACAACGAAGGACTTTGGCTGAAAGTTTGGCAGCAGCTATAGCCGACGATGATGAGAATGAACTGGATACCATCAATGAAGAAGAACCACAATATTCCGAAGAAGATTTAAAACTTAAAGATAATGTTAGTAAACTATTGGATATGTTGGTGGATAGTTTTACACTTAAGAAATTTGGTTGGCCAGAGATTTCGGAAGAAACCGTGCTTTGCAAAGTTATTGAGAATTGCGGCCATGACTTATCGAAAGATCAATATAACTATACTGCTTGGGATTATGCCAGTCGCATGCGTGAATATGTTAAATTACTATTCACCGTTGTCATACACAACGATTCCATTAAGGAATTACTCAATAACTATCCCATTGACGAAGTTATTGAATATGTTTTGGGCAATGACGATGACGAGGATGATGACGATGAGGAGGGCGACAATGTAAATAAGAGTAAAGATAAAGCAGATGATAAAACTGTTTTAGAAACCATCAAACGAGAAAGCGACGATTAG
Protein Sequence
MLAVVIEKNLISAKKFFNTMSSKKDNPESSTRRSSSGIKILNDEKITTLLPLKIPVMTSVPLSPPKQITLSIAKPKKALKQKNMDHYVMKTVKGEKNTDNGLEESETIDFILAESNEDEVSKQSGEITEELHLSDDDDRDSTFTGSTQEIVEHVCGKCYKTFRRIKSLKKHLDYCRFDSGYHIRKAEMLKNLEKIEKDAIIMENKDVCFCCGESYDTFHLGHINCPDCPKSFKTQMSYERHIFITHSEFDDHPCSICNAKLRSANLLKLHEEQHRNRGKPFACKLCGKDFTRSYHLSRHQKFSSCSANENDTMHCKVCNKAFYRLDNLRAHLKQHLGTQQTKKSEYMCPICKKCFYSLSTLNIHTRTHTGEKPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQGTQLRTHIKIHLRPYECDQCPEKYRTEKQLEKHMKEHSATNRRGRIRMANKCLICKKGFKTELEFNNHMQMGTHITPAQRRKIKNRTDCAVCKENFDSVQSLQFHILKVHQEDPETFINEDPFGTPSRAKDIDSMLMPAPKVIKIEDAQGQRIEFVTTNSEGKILNTSIQGLNQQQILSPDSKTEDSNKVRILEQYVIDDSPSTSASAGGKRTIFLTNEAYTVIPLESDGGFIEPITTNTLPSNIVSPECKKEQRRTLAESLAAAIADDDENELDTINEEEPQYSEEDLKLKDNVSKLLDMLVDSFTLKKFGWPEISEETVLCKVIENCGHDLSKDQYNYTAWDYASRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDDDEDDDDEEGDNVNKSKDKADDKTVLETIKRESDD