Pmau004583.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Paykullia maculata
Gene Symbol
su(Hw)
Assembly
GCA_003055125.1
Location
NDXZ01060671.1:4161-8884[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 8.8e-05 0.006 17.3 2.0 1 20 135 154 135 156 0.94
2 11 8.1e-06 0.00055 20.6 0.3 3 23 207 228 205 228 0.93
3 11 0.11 7.6 7.6 0.6 1 23 234 256 234 256 0.95
4 11 1.6e-05 0.0011 19.7 2.6 1 21 263 283 263 284 0.95
5 11 3.7e-05 0.0026 18.5 3.0 3 23 297 317 295 317 0.96
6 11 7.8e-06 0.00053 20.6 4.3 1 23 328 350 328 350 0.98
7 11 6.8e-05 0.0047 17.7 0.8 1 23 356 378 356 378 0.97
8 11 1.5e-05 0.001 19.8 1.0 1 23 384 406 384 406 0.99
9 11 8.5e-07 5.8e-05 23.7 0.9 1 23 412 434 412 434 0.97
10 11 0.00013 0.0087 16.8 2.6 1 23 438 460 438 460 0.96
11 11 8.5e-05 0.0059 17.4 0.6 2 23 474 497 473 497 0.92

Sequence Information

Coding Sequence
ATGAATATGAAAGTGCAGAAATCTAGCTCGCCCACAAAACGTTCTAGTTCGGGCATTAAAATACTCAATGATGAAAAAATATCGCCTCCTTCAAAGGTAGCAGTAATGACATCGTTACCAATATCGCCACATAAGCAAATTACATTATCCATTGCTAAAccgaaaaaccaaaaaaaagctaTGAAACAAGAGAACATGGATCATTATGTGATGAAAACTGTAAAAGGGGAGAAAAATACCGAATTGGGCTTAGAAGAAAGCGAtacaattgattttattttagcaGAAAGCAACGAAGACGATTTGTTAAAGAAGAGTCAAGAAATAACCGAAGAATTGCATCTTAGTGAAGAAGAAGATCGTGATTCAACTTTTACTGGTGCTACACGGGAGATTGTTGAGCATGTGTGTGGGAAATGCTTTAAGACTTTTAGGCGATTATCGaGTCTGAGAAAACATCTTGATTATTGTCGATTTGATAGCGGCTACCATATTCGCAAAGCGGAAATGTTGAAAAACTtagataaaattgaaaaagatgCCGCCATAATGGAAAATAAAGATGTCTGTTTTTGTTGCGGTGAAAGTTATGATACATTtcatttgggtCATATTAACTGTCCCGACTGTCCTAAATCATTTAAAACGCAAATAAGTTATGAACGTCATATATTTATAACACACTCAGAGTTCGATAACTATCCCTGCTGCATTTGTAATGCCAAATTACGTAGCGCAAATCTATTGAAATTACACGAAGAGCAGCATCGCAATCGTGGCAAACCTTATGCCTGCAAAATTTGTGGCAAGGATTTTACACGTTTTTATCATTTGAGTCGTCATCAAAAGTTCTCTTCCTGTTCGGCCAACGAAAACGACACAATGCATTGCAAAGTCTGCAATAAAGCATTTTATCGTTTAGATAATTTAAGATCCCATCTTAAGCAGCATTTGGGTACTCAATCATTTAAAAGATCTGAGTACATGTGTCCGacatgtaaaaaatgtttctacagTTTGTCTACATTAAATATACATACACGTACGCATACAGGTGAAAGGCCATTCGATTGTGATTTATGTGAGAAAAAGTTTCCATCGTTGGTTGCTTTAAAAAAGCATAGACGTTATCATACCGGAGAAAAACCCTATACTTGTTCCGTAtGTAAGCAATCATTTGCTGTTAAGGAAGTTTTAAATCGTCATATGAAACGTCATACAGGCGAACGGCCTCATGTTTGTAGTGAATGTggtaaaagttttattcaaGGCAGTCAACTTCGTACTCACATCAAGATTCATTTAAGACCCCACATATGTCAGGAATGTCCAGAGAAATTTAGAACAGAGAAGcaATTAGAGAAACATACGAAACAGCATATGGCGCCTAAAAGAAAGGGTCGCAcaagaaattcaaataaatgtcTTATATGTAAGAAAGGCTTTAAAACTGAAATTGAGTTAAACAAACACATGCAGATGGGTAACCATACtaCACCATCCCAAAGACGTAAAATGAAAACACGTACCGATTGCGCTGTTTGCAAAGAAGATTACGATAGTGTTCAAAGTCTTCAATTTCACATACTCAAAGTACATCAAGAAGATCCCGAAACTTTTATCAATGAAGATCCCTTCGATACACCCCTACGTGCTAAAGACATTGATTCGTTGCTAATGCCTGCTCCTAAGGTTATTAAAATTGAAGATGGTCAGGGTCAACGCATAGAATTTGTTACAACTAATAGtgagggtaaaattttaaacaccaATATCAAGGGTCTGaaccaacaacaaatttttagttcAGACAAACAAGTAGAAAACTCAAATAAACTGCAAATATTAGAGCAATATATATTCGATAATGGTCCCTCTACATCAGCAGACTCAGGTGCCAAACAGACCATATTTTTGTCAAATGAAGCCTTTACTGTTATACCTCTGGAATCAGACGATGGCATAATAGAGCCAATCACTACAAACACATTGCCAACTAATATTATAAGTCCAGAGTGCAAAAAGGAACAACGAAAAACTTTGGCTGAAAGTTTGGCCGCTGCCATAGCCGATGACGATGATCTAAATGAGCTCGAAAGCTTATGTGAGGAAGTACAACTTTCAGAAGAAGATATAAAGCTAAAAGATAACGTAAGCAAACTGTTGGATATGCTGGTGGACAGTGCAACACTTAAAAAGTTTGGTTGGCCAGATATTTCAGAGGAAAGCGTACTTTGTAAGGTTATTGATAATTGCGGTCATGACTTATCTAAAGAGCAATACAACTATACGGACTGGGACTACGCCAGTCGCATGCGTGAATatgttaaattactttttactgTTGTTATACACAATGATTCCATTAAAGAATTACTTAACAACTATCCCATTGATGAAGTTATTGAATATGTTTTGGGCAATGACGACGACGacgaagatgatgatgatggtgacaAAGAGAAGAATGATAAGAAAGTTGACTTGAACGATAAAGAAAGTGATACAACTGTTTTGGAAAACATTAAACGGGAAAATGACGATTAG
Protein Sequence
MNMKVQKSSSPTKRSSSGIKILNDEKISPPSKVAVMTSLPISPHKQITLSIAKPKNQKKAMKQENMDHYVMKTVKGEKNTELGLEESDTIDFILAESNEDDLLKKSQEITEELHLSEEEDRDSTFTGATREIVEHVCGKCFKTFRRLSSLRKHLDYCRFDSGYHIRKAEMLKNLDKIEKDAAIMENKDVCFCCGESYDTFHLGHINCPDCPKSFKTQISYERHIFITHSEFDNYPCCICNAKLRSANLLKLHEEQHRNRGKPYACKICGKDFTRFYHLSRHQKFSSCSANENDTMHCKVCNKAFYRLDNLRSHLKQHLGTQSFKRSEYMCPTCKKCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQGSQLRTHIKIHLRPHICQECPEKFRTEKQLEKHTKQHMAPKRKGRTRNSNKCLICKKGFKTEIELNKHMQMGNHTTPSQRRKMKTRTDCAVCKEDYDSVQSLQFHILKVHQEDPETFINEDPFDTPLRAKDIDSLLMPAPKVIKIEDGQGQRIEFVTTNSEGKILNTNIKGLNQQQIFSSDKQVENSNKLQILEQYIFDNGPSTSADSGAKQTIFLSNEAFTVIPLESDDGIIEPITTNTLPTNIISPECKKEQRKTLAESLAAAIADDDDLNELESLCEEVQLSEEDIKLKDNVSKLLDMLVDSATLKKFGWPDISEESVLCKVIDNCGHDLSKEQYNYTDWDYASRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDDDDEDDDDGDKEKNDKKVDLNDKESDTTVLENIKRENDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00045491;
90% Identity
-
80% Identity
-