Basic Information

Insect: Phormia regina
Gene Symbol: su(Hw)
Assembly: GCA_001735585.1
Location: MINJ01001195.1:3074-6089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00073 0.077 14.5 2.1 1 20 138 157 138 159 0.94

2 12 4.8e-06 0.0005 21.4 0.4 2 23 209 231 208 231 0.94

3 12 0.026 2.7 9.6 0.1 1 23 237 259 237 259 0.95

4 12 2.1e-06 0.00022 22.5 2.1 1 21 266 286 266 287 0.95

5 12 1.4e-05 0.0015 19.9 2.2 3 23 300 320 298 320 0.96

6 12 1.6e-06 0.00016 22.9 3.4 1 23 331 353 331 353 0.98

7 12 6.3e-05 0.0067 17.8 0.8 1 23 359 381 359 381 0.97

8 12 1.4e-05 0.0014 19.9 1.0 1 23 387 409 387 409 0.99

9 12 3.2e-06 0.00034 21.9 0.9 1 23 415 437 415 437 0.97

10 12 8.5e-06 0.00089 20.6 0.7 1 23 441 463 441 463 0.98

11 12 0.0031 0.33 12.5 0.5 2 21 477 496 476 500 0.91

12 12 1.4 1.5e+02 4.2 0.2 3 23 515 536 513 536 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00073	0.077	14.5	2.1	1	20	138	157	138	159	0.94
2	12	4.8e-06	0.0005	21.4	0.4	2	23	209	231	208	231	0.94
3	12	0.026	2.7	9.6	0.1	1	23	237	259	237	259	0.95
4	12	2.1e-06	0.00022	22.5	2.1	1	21	266	286	266	287	0.95
5	12	1.4e-05	0.0015	19.9	2.2	3	23	300	320	298	320	0.96
6	12	1.6e-06	0.00016	22.9	3.4	1	23	331	353	331	353	0.98
7	12	6.3e-05	0.0067	17.8	0.8	1	23	359	381	359	381	0.97
8	12	1.4e-05	0.0014	19.9	1.0	1	23	387	409	387	409	0.99
9	12	3.2e-06	0.00034	21.9	0.9	1	23	415	437	415	437	0.97
10	12	8.5e-06	0.00089	20.6	0.7	1	23	441	463	441	463	0.98
11	12	0.0031	0.33	12.5	0.5	2	21	477	496	476	500	0.91
12	12	1.4	1.5e+02	4.2	0.2	3	23	515	536	513	536	0.93

Sequence Information

Coding Sequence: ATGAGTTTGAAAAATGAACAATTAGACTCCTCATCCTCACCCGGTAAAAAACGTTCGGGTTCGAGCATTAAAATACTCaatgatgaaaaaataacaCCACAAATACCTTTCAAAATACCGGTAATGACTTCCGTGCCGTTGTCACCACCCAAGCAGATCACATTGTCGATTGCTAAACCAAAAAAGGCTATGAAACAAAAGAATATGGATCACTATGTAATGAAAACTGTAAAAGGGGAGAAAAATTCAGATACTGGTGTAGAGGAAAGCGAAACGATTGATTTTGTGTTGGCGGAAAATAATGAAGAGGAATCGTCAAAACCGAGTGTTGAAATAACTGAAGAACTGCACCTGAGTGACGATGACGATCGAGATTCAACATTCACCGGATCAACGCAAGAGATTGTTGAACATGTTTGTGGAAAATGCTATAAGACTTTTAGGCGAATAAAgAGTCTGAAAAAACATCTCGATTATTGTCGTTTCGATAGTGGTTATCATATTCGCAAAGCGGAAATGTTGAAAAActtggaaaaaattgaaaaagatgCCATCATAATGGAGAATAAggatgtttgtttttgttgcggTGAAAGTTATGATACCTTTCATTTGGGTCATATTAGTTGTCCTGATTGTcctaaatcatttaaaacacaAATGAGCTATGAAagacatatatttataacacaTTCAGAATTTGATGATTATCCCTGTAGTATATGCAATGCTAAATTACGTAGTgctaatctattgaaattacaCGAAGAGCAACATCGCAATCGTGGCAAACCATTTGCTTGCAAGATTTGTGGTAAAGATTTCACGCGTTCCTATCATTTGAGTCGCCATCAAAAATATTCATCCTGCTCGGCCAATGAAAATGATACCATGCATTGCAAAGTCTGCAATAAAGCATTCTATCGCTTGGACAATTTAAGAGCtcatttaaaacaacatttgGGTACCCAGCCAACTAAGAAGTCGGAATATATGTGTccaatatgtaaaaaatgtttttatagctTGTCTACTTTAAAtattcacACACGTACACATACAGGTGAAAAACCATTTGATTGTGATTTATGTGAGAAAAAGTTTCCGTCATTGGTGGCTTTGAAAAAGCATAGACGTTATCATACCGGTGAAAAACCCTATACGTGTTCTGTGtGTAAACAATCATTTGCCGTCAAAGAAGTATTAAATCGTCATATGAAACGTCATACGGGCGAAAGGCCTCATGTTTGCAGTGAATGTGGTAAAAGTTTCATACAAGGCACTCAACTTCGTACTCACATTAAGATCCATTTAAGGCCATACGAATGTGATCAATGTCCAGAAAAATATAGAACTGAAAAACAATTAGAAAAACATATGAAAGAGCATAGTGCATCAAAACGTAAGGGACGTAATCGATTGGTAAATAAATGTCTTATATGTAAGAAAGGCTTTAAatctgaactagaatttaacaATCACATGCAAGCGGGTTCTCATACTAcTCCCGCCCAAAGACGTAAATTGAAAACTCGTACTGATTGTGCTGTatgcaaagaaaattttgattctgtccAAAGTCTTCAATTTCATATACTCAAAGTTCACCAGGAAGACCCTGAAACGTTCGTTAATGAAGATCCCTTCGAATCTTCCTCACCAGCGAAAGATATTGATTCAATGTTAATGCCCGCTcctaaagttattaaaattgaagatgCTCAAGGACAGCGTATTGAATTCGTTACCACTAACAGCGaaggcaaaatattaaataccaaCATTCAAGGTCTTAATCAGCAACAAATCTTAAGTCCAGATAGCAAAAAATCAGATTCGaataaagtaaacattttagaacaatttattATCGATGAAGGACCTTCAACATCGGCGGGTGGCAaacaaactataattttatCCAATGAAGCTTTTACTGTTATACCCCTGGAATCAGATGGTGGTATAATAGAGCCAATTGCAACCAAGTCCTTATCAAGTAATATTATTAGTCCTGAGTGTAAAAAGGAACAACGTAAGACCTTGGCAGAAAGTTTAGCAGCTGCAATTGCAGATGATGATGAGAATATGGTTACCAGCAAAGAATATGAACAACTTTCCGAAGAggatttaaaactaaaagacAATGTTAGTAAACTATTGGATATGTTGGTGGACAGTGCAACACTTAAGAAATTCGGTTGGCCAGAAATATCAGAAGAAACTGTACTTTGCAAAGTTATTGAGAATTGTGGCCACGATTTACACAAAGATCAATACAACTATGCTGCATGGGATTATGCCAGTCGAATGCAAAATgatgattaa
Protein Sequence: MSLKNEQLDSSSSPGKKRSGSSIKILNDEKITPQIPFKIPVMTSVPLSPPKQITLSIAKPKKAMKQKNMDHYVMKTVKGEKNSDTGVEESETIDFVLAENNEEESSKPSVEITEELHLSDDDDRDSTFTGSTQEIVEHVCGKCYKTFRRIKSLKKHLDYCRFDSGYHIRKAEMLKNLEKIEKDAIIMENKDVCFCCGESYDTFHLGHISCPDCPKSFKTQMSYERHIFITHSEFDDYPCSICNAKLRSANLLKLHEEQHRNRGKPFACKICGKDFTRSYHLSRHQKYSSCSANENDTMHCKVCNKAFYRLDNLRAHLKQHLGTQPTKKSEYMCPICKKCFYSLSTLNIHTRTHTGEKPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQGTQLRTHIKIHLRPYECDQCPEKYRTEKQLEKHMKEHSASKRKGRNRLVNKCLICKKGFKSELEFNNHMQAGSHTTPAQRRKLKTRTDCAVCKENFDSVQSLQFHILKVHQEDPETFVNEDPFESSSPAKDIDSMLMPAPKVIKIEDAQGQRIEFVTTNSEGKILNTNIQGLNQQQILSPDSKKSDSNKVNILEQFIIDEGPSTSAGGKQTIILSNEAFTVIPLESDGGIIEPIATKSLSSNIISPECKKEQRKTLAESLAAAIADDDENMVTSKEYEQLSEEDLKLKDNVSKLLDMLVDSATLKKFGWPEISEETVLCKVIENCGHDLHKDQYNYAAWDYASRMQNDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045491;
90% Identity: iTF_01261199; iTF_00350339; iTF_01259376; iTF_00331679;
80% Identity: -