Dcan006201.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dexiosoma caninum
Gene Symbol
su(Hw)
Assembly
GCA_963924685.1
Location
OZ004725.1:121042264-121048205[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00035 0.028 15.6 2.4 1 20 134 153 134 155 0.94
2 12 5.6e-06 0.00045 21.2 0.4 2 23 205 227 204 227 0.94
3 12 0.056 4.5 8.7 0.1 1 23 233 255 233 255 0.95
4 12 3.7e-06 0.0003 21.8 2.4 1 21 262 282 262 283 0.95
5 12 7.8e-06 0.00063 20.8 2.0 3 23 296 316 294 316 0.96
6 12 3.5e-05 0.0028 18.7 4.2 1 23 327 349 327 349 0.98
7 12 7.5e-05 0.006 17.7 0.8 1 23 355 377 355 377 0.97
8 12 1.6e-05 0.0013 19.8 1.0 1 23 383 405 383 405 0.99
9 12 5.3e-07 4.2e-05 24.5 2.8 1 23 411 433 411 433 0.98
10 12 5.3e-05 0.0042 18.2 0.2 1 23 437 460 437 460 0.96
11 12 0.00089 0.072 14.3 0.5 2 23 474 497 473 497 0.90
12 12 1.6 1.3e+02 4.0 0.2 3 23 512 533 510 533 0.93

Sequence Information

Coding Sequence
ATGAGTCTTCTAAAGGAATCGCATCAGTCTCATACTAGACGTTCTAGTTCTGGTATTAAAATACTCAACGATGAAAAGGTGAATGTGGCTCTGCCATTAAAAATACCAGTAATGACTTCAGTGCCGTTGTCGCCACCTAAGCAAATCACATTGTCCATTGCGAAACCGAAAAAAGGTTTGAAGCAAAAGAATATGGATCATTATGTGATGAAAACGGTCAAAGGAGAAAAGAATACTGATGATGGCATGGAGGAAAGTGAAACGATTGATTTCGTATTGAGAGAAAATAACGATGATGAGACCTTAAAGCAAGCCGGAGAGATAACCGAAGAATTACATTTAagtgacgatgatgatgatgatgatatgaCAATTCGCGGATCGCAAGAGATTGTTGAACATGTTTGCGGAAAATGCTATAAAACTTTTAGGCGTTTAAAGAGTTTAAAAAAGCATTTAGACTATTGTCGTTTCGATAGTGGTTACAATGTTCGAAAAGcggaaatgctaaaaaatttggagaaaattgaaaaagatgctgtaattatggaaaataaagaTGTTTGCTTTTGTTGTGGAGAAAGTTATGACACATACCATTTGGGTCACATTAGCTGCCCTGACTGTCCAAAATCTTTCAAAACACAAATGAGTTATGAGCGCCACATATTCATAACACATTCTGAATTTGATAACTATCCTTGTAGTGTATGTAATGCTAAATTGCGCAGTGCTAATTTATTAAAGTTACACGAGGAACAACATCGTAATCGAGGAAAGCCGTTTGCTTGTAAAATGTGTGGAAAAGAATTTACTCGTTCCTATCATTTGAGTCGCCATCAAAAGTATTCCTCCTGTTCGGCTAATGAAAATGACACTATGAATTGTAAAGTGTGCAATAAATCATTCTATCGTTTGGATAACTTAAGATCACATCTAAAACAACACTTGGGTACCCAGCAGACAAGGAAATCGGAATACATGTGTccaacatgtaaaaaatgtttctatagTTTGTCAACCTTAAAcaTTCATAATCGTACTCATACGGGAGAAAGACCATTTGATTGTGATTTGTGTGAGAAAAAGTTTCCTTCATTGGTGGCTCTGAAAAAGCATAGACGTTATCACACAGGAGAAAAGCCCTACACTTGCTCAGTGTGCAAACAGTCGTTTGCTGTTAAAGAAGTTTTAAATCGTCACATGAAGCGCCATACAGGCGAAAGACCGCATGTGTGCAGTGAATGCGGCAAAAGCTTTATCCAACGCACCCAACTTCGCACTCACCTCAAGACCCATTTAAGACCTTTCGAATGCGCTCTATGTCCAGAAAAGTTTAAAACTGAAAAACAATTAGAGAAACACGTGAGAGAAGGACACAGTATGAAAAAGCGAAAGGGGCGCGCACGTTTGTTCATTAAATGCGAGATATGTAAGACCGGTTTTAAAACAGAACTAGAGTTTAACAAACACATGCAGATAGGCAAACATATCACACCTGCTCAAAGACGCCGGTTGAAGAGTCGAACGGATTGTgcagtttgtaaagaaaattttgattctgTGCAAAGTCTTCAGTTCCATATACTCAAAGTGCACCAAGAAGATCCCGAAACATTCGTTAATGAGGATCCCTTTGAAACTCGTATTACAAAAAATGATGCAATTGCAATGCCTGCtccaaaagtaattaaaattgaGGATGCACAGGGTCAACGCATAGAATTTGTTACCACTAACAGTGACGGCAAAATACTGAATACGAACGTTGAGGGTTTGAATCAAGAACACATTGTAAGTCCAGAGACCAAAGTAGTACCAGAATCAAACAAAGTTCGTATTTTGGAGCAGTACATATTAGACGAAAGTCCCACAACCTCAACGAGTGGTGCCGGCAAACAGACTATATTCTTATCGAATGAAGAATTCACCGTAATACCCTTAGAATCGAATGGTGGTTTTATCGAACCAATTACTACAACAACAATTCCAAACAATGTTGTAAGCATTGATTGCAAAAAGGAGCAACGAAAATCTTTGGCTAAAAGCTTGGCCGCTGCTATTGCCGATGATGAAGGAAAACCATTAGAAAATGTTAATGCAGAACCAAAATATTCTGAAGAagacttaaaaattaaagataatgTAGGCAAATTATTAGACATGCTGGTGGACACTATTACCCTAAAAAAATTCGGTTGGCCAGGTGTTACGGAGGAAACGGTCCTTTGTAAAGTTATTGAAAATTGTGGCCATGATTTATCGAAAGAGCAATATATTTGTTATAAGACTTGGGACTATGCCACTCGCATGCGTGAATATGTTAAATTACTTTTCACTGTTGTAGTTCACAACGACTCCATAAAGGAATTGCTCAATAACTATCCGATTGATGAAGTTATTGAATATGTTTTAGGAAATGAGGacgatgttgatgatgatgatgacgatgagaacgttaatttaaatgaattgataCGTAAAGAATATGATAGATCTCTCTTAAAAACCATCAAACGTGAAAGTGAGGATTAA
Protein Sequence
MSLLKESHQSHTRRSSSGIKILNDEKVNVALPLKIPVMTSVPLSPPKQITLSIAKPKKGLKQKNMDHYVMKTVKGEKNTDDGMEESETIDFVLRENNDDETLKQAGEITEELHLSDDDDDDDMTIRGSQEIVEHVCGKCYKTFRRLKSLKKHLDYCRFDSGYNVRKAEMLKNLEKIEKDAVIMENKDVCFCCGESYDTYHLGHISCPDCPKSFKTQMSYERHIFITHSEFDNYPCSVCNAKLRSANLLKLHEEQHRNRGKPFACKMCGKEFTRSYHLSRHQKYSSCSANENDTMNCKVCNKSFYRLDNLRSHLKQHLGTQQTRKSEYMCPTCKKCFYSLSTLNIHNRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQRTQLRTHLKTHLRPFECALCPEKFKTEKQLEKHVREGHSMKKRKGRARLFIKCEICKTGFKTELEFNKHMQIGKHITPAQRRRLKSRTDCAVCKENFDSVQSLQFHILKVHQEDPETFVNEDPFETRITKNDAIAMPAPKVIKIEDAQGQRIEFVTTNSDGKILNTNVEGLNQEHIVSPETKVVPESNKVRILEQYILDESPTTSTSGAGKQTIFLSNEEFTVIPLESNGGFIEPITTTTIPNNVVSIDCKKEQRKSLAKSLAAAIADDEGKPLENVNAEPKYSEEDLKIKDNVGKLLDMLVDTITLKKFGWPGVTEETVLCKVIENCGHDLSKEQYICYKTWDYATRMREYVKLLFTVVVHNDSIKELLNNYPIDEVIEYVLGNEDDVDDDDDDENVNLNELIRKEYDRSLLKTIKRESED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00045491;
90% Identity
-
80% Identity
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