Basic Information

Insect: Calliphora vomitoria
Gene Symbol: su(Hw)
Assembly: GCA_942486075.2
Location: CALNXM020000545.1:142448-145462[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00098 0.048 14.3 2.1 1 20 134 153 134 155 0.94

2 12 8.4e-06 0.00041 20.8 0.4 3 23 206 227 204 227 0.93

3 12 0.089 4.4 8.2 0.4 1 23 233 255 233 255 0.94

4 12 1.4e-05 0.00068 20.2 2.6 1 21 262 282 262 283 0.95

5 12 1.9e-05 0.00091 19.8 2.2 3 23 296 316 294 316 0.96

6 12 2.1e-06 0.0001 22.7 3.4 1 23 327 349 327 349 0.98

7 12 8.5e-05 0.0042 17.7 0.8 1 23 355 377 355 377 0.97

8 12 1.8e-05 0.00089 19.8 1.0 1 23 383 405 383 405 0.99

9 12 4.3e-06 0.00021 21.8 0.9 1 23 411 433 411 433 0.97

10 12 7e-05 0.0034 18.0 0.9 1 23 437 459 437 459 0.97

11 12 0.0016 0.077 13.7 0.9 2 23 473 496 472 496 0.92

12 12 1.9 91 4.0 0.2 3 23 511 532 509 532 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00098	0.048	14.3	2.1	1	20	134	153	134	155	0.94
2	12	8.4e-06	0.00041	20.8	0.4	3	23	206	227	204	227	0.93
3	12	0.089	4.4	8.2	0.4	1	23	233	255	233	255	0.94
4	12	1.4e-05	0.00068	20.2	2.6	1	21	262	282	262	283	0.95
5	12	1.9e-05	0.00091	19.8	2.2	3	23	296	316	294	316	0.96
6	12	2.1e-06	0.0001	22.7	3.4	1	23	327	349	327	349	0.98
7	12	8.5e-05	0.0042	17.7	0.8	1	23	355	377	355	377	0.97
8	12	1.8e-05	0.00089	19.8	1.0	1	23	383	405	383	405	0.99
9	12	4.3e-06	0.00021	21.8	0.9	1	23	411	433	411	433	0.97
10	12	7e-05	0.0034	18.0	0.9	1	23	437	459	437	459	0.97
11	12	0.0016	0.077	13.7	0.9	2	23	473	496	472	496	0.92
12	12	1.9	91	4.0	0.2	3	23	511	532	509	532	0.93

Sequence Information

Coding Sequence: ATGAGTTCGAAAAAACAGAATCCTGAATCGTCCACTAGACGTTCTAGTTCGGGTATTAAGATATTAAATGATGAAAAAATAACAGCACTGTCACCTTTAAAAATACCCGTGATGACTTCGGTGCCCTTGTCGCCTCCCAAACAAATCACCTTATCTATTGCCAAACCCAAAAAAGCTTTAAAACAAAAAAACATGGATCATTATGTGATGAAGACGGTCAAAGGAGAGAAAAATACTGATAACGGTTTAGAAGAAAGCGAAACAATTGATTTTATATTGGCGGAGAGTAATGAAGACGAAGTAACAAAGCAGACTGGAGAAATAACGGAAGAACTGCACCTAAGTGATGATGATGACCGTGATTCGACATTTACAGGTTCAACACAAGAGATTGTTGAACATGTTTGCGGAAAATGCTATAAGACTTTTAGGCGAATAAAGAGTCTCAAAAAACATCTCGACTATTGTCGATTCGATAGTGGTTATCACATTCGAAAAGCGGAAATGTTGAAAAACTTGGAGAAAATTGAAAAAGATGCCATCATAATGGAGAATAAGGATGTCTGTTTTTGTTGTGGTGAAAGTTATGATACATTTCATTTGGGCCATATTAATTGTCCCGATTGTCCTAAATCGTTTAAAACTCAAATGAGCTATGAACGTCATATATTTATAACACATTCGGAGTTCGATGATCATCCCTGCAGTATTTGTAATGCTAAACTGCGCAGTGCTAATCTATTGAAACTACACGAAGAGCAACATCGTAATCGAGGCAAACCATTTGCTTGCAAGCTTTGTGGCAAAGATTTTACCCGTTCTTATCATTTGAGTCGTCATCAGAAGTTTTCCTCATGTTCGGCCAATGAGAATGATACTATGCATTGTAAAGTATGCAATAAAGCATTCTATCGTTTGGATAATTTAAGAGCTCATCTGAAACAGCATTTGGGTACTCAGCAAACCAAGAAATCGGAATACATGTGTCCAATATGTAAAAAATGTTTCTATAGTTTGTCAACTTTAAATATTCACACGCGTACTCATACTGGCGAAAAACCATTCGATTGTGATTTATGTGAGAAAAAGTTTCCATCATTGGTTGCTTTGAAGAAGCATAGACGTTATCACACCGGAGAAAAACCCTATACCTGTTCAGTGTGTAAACAATCGTTTGCAGTCAAGGAAGTATTAAATCGTCATATGAAACGTCATACGGGAGAAAGACCTCATGTTTGCAGTGAATGTGGTAAAAGTTTTATACAAGGCACTCAACTACGTACTCACATTAAGATCCATTTAAGGCCTTACGAATGTGATCAATGTCCAGAGAAATTTAGAACTGAAAAGCAATTAGAGAAACATTCGAAAGAGCATAGTGCCACAAACAGAAGGGGGCGTACACGAATGGCAAATAAGTGTCTGATATGTAAGAAGGGCTTTAAAACTGAACTGGAGTTTAACAATCACATGCAGATGGGAACTCATATAACTCCTGCTCAAAGGCGTAAAATAAAAAATCGTACTGATTGTGCAGTTTGCAAAGAAAATTTCGATTCTGTACAAAGTCTACAATTTCATATACTCAAAGTTCACCAAGAAGATCCCGAGACTTTTATCAATGAAGACCCCTTCGGAACTCCCTCGCGAGCTAAGGACATTGATTCTTTGCTAATGCCAGCTCCTAAAGTTATTAAAATTGAGGATGCCCAGGGCCAGCGCATAGAATTTGTTACCACCAACAGTGAGGGTAAAATTTTAAATACCAACATTCAGGGACTGAATCAACAACAAATCTTAAGTCCAGACAGCAAAACAGAGGATTCGAATAAAGTGCGCATTTTAGAGCAATATGTAATCGACGATAGTCCATCAACATCAGCAAGTGCTGGTGGCAAACGTACCATATTCTTGACAAATGAAGCTTATACTGTTATACCGCTAGAATCGGACGGCGGCTTTATAGAGCCCATTACTACAAACACATTGCCAAGTAATATTATAAGTCCTGAATGCAAAAAGGAACAACGAAGGACTTTGGCTGAAAGTTTGGCAGCTGCTATAGCCGATGATGATGAGAATGAATTGGATACCATCAATGAAGAAGAACCACATTATTCCGAAGAAGATTTAAAACTTAAAGATAATGTTAGTAAACTATTGGATATGTTGGTGGATAGTTGTACACTTAAGAAATTTGGTTGGCCAGAGATTTCGGAAGAAACCGTACTTTGCAAAGTTATTGAAAATTGCGGCCATGACTTATCGAAAGATCAATATAACTATACTGCTTGGGATTATGCAAGTCGCATGCGTGAATATGTTAAGTTACTATTCACCGTTGTCATACACAACGATTCCATTAAGGAATTACTCAATAACTATCCCATTGACGAAGTTATTGAATATGTTTTGGGCAATGACGATGACGAGGATGATGACGATGAGGAGGGCGACAATGTAAAAAACAGTAAAGACAAAGCAGATGATAAAACTGTTTTAGAAACCATCAAACGAGAAAGCGAAGATTAG
Protein Sequence: MSSKKQNPESSTRRSSSGIKILNDEKITALSPLKIPVMTSVPLSPPKQITLSIAKPKKALKQKNMDHYVMKTVKGEKNTDNGLEESETIDFILAESNEDEVTKQTGEITEELHLSDDDDRDSTFTGSTQEIVEHVCGKCYKTFRRIKSLKKHLDYCRFDSGYHIRKAEMLKNLEKIEKDAIIMENKDVCFCCGESYDTFHLGHINCPDCPKSFKTQMSYERHIFITHSEFDDHPCSICNAKLRSANLLKLHEEQHRNRGKPFACKLCGKDFTRSYHLSRHQKFSSCSANENDTMHCKVCNKAFYRLDNLRAHLKQHLGTQQTKKSEYMCPICKKCFYSLSTLNIHTRTHTGEKPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQGTQLRTHIKIHLRPYECDQCPEKFRTEKQLEKHSKEHSATNRRGRTRMANKCLICKKGFKTELEFNNHMQMGTHITPAQRRKIKNRTDCAVCKENFDSVQSLQFHILKVHQEDPETFINEDPFGTPSRAKDIDSLLMPAPKVIKIEDAQGQRIEFVTTNSEGKILNTNIQGLNQQQILSPDSKTEDSNKVRILEQYVIDDSPSTSASAGGKRTIFLTNEAYTVIPLESDGGFIEPITTNTLPSNIISPECKKEQRRTLAESLAAAIADDDENELDTINEEEPHYSEEDLKLKDNVSKLLDMLVDSCTLKKFGWPEISEETVLCKVIENCGHDLSKDQYNYTAWDYASRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDDDEDDDDEEGDNVKNSKDKADDKTVLETIKRESED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045491;
90% Identity: iTF_00200063;
80% Identity: -