Pgri000797.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia griseotomentosa
Gene Symbol
su(Hw)
Assembly
GCA_963931875.1
Location
OZ007560.1:10352028-10356982[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0019 0.32 13.3 1.9 1 20 133 152 133 154 0.94
2 12 7.8e-06 0.0013 20.8 0.4 3 23 205 226 203 226 0.93
3 12 0.083 14 8.2 0.4 1 23 232 254 232 254 0.94
4 12 9.6e-06 0.0016 20.5 2.4 1 21 261 281 261 282 0.95
5 12 1.4e-05 0.0023 20.0 2.1 2 23 294 315 293 315 0.96
6 12 2e-06 0.00032 22.7 3.4 1 23 326 348 326 348 0.98
7 12 0.00014 0.024 16.9 0.8 1 23 354 376 354 376 0.97
8 12 1.7e-05 0.0028 19.8 1.0 1 23 382 404 382 404 0.99
9 12 8.8e-06 0.0015 20.7 0.9 1 23 410 432 410 432 0.97
10 12 1e-05 0.0017 20.5 1.4 1 23 436 458 436 458 0.98
11 12 0.00072 0.12 14.6 0.8 2 22 472 492 471 495 0.91
12 12 1.7 2.9e+02 4.0 0.2 3 23 510 531 508 531 0.93

Sequence Information

Coding Sequence
atgagtttaaaaaaagaaccgAAGCAAGCCTCATTAACTAGACGTTCTAgtttgggtataaaaatactcAATGATGAGAAAATAACTGCACCATTACCATTGAAAATACCAGTTATGACATCGGTGCCTTTGTCGCCACCAAAACAAATCACATTGTCCATTGCCAAACccaaaaaaaccttaaaacaaAAGAACATGGATCATTACGTCATGAAAACAGTGAAAGGAGAGAAAAATACTGACACCGGTGTAGAAGAAAGTGAAACGATTGATTTTATACTGACGGAAAATGACGAGTTGTCAAAGGCGAGTGGGGAAATAACTGAAGAGCTGCTTCTAAGCGATGAAGACGACCATGATTCTACTTTTACAGGATCAACACAAGAGATTGTGGAACATGTCTGTGGAAAATGTTATAGGACATTTAGAAGAATAAAGAGTCTAAAAAAACATCTAGATTACTGCCGTTTCGATAGTGGATATCACCTACGTAAAGCAGAAATGTTAAAGAACttagaaaaaattgaaaaggatGCAATcataatggaaaataaagacgtCTGTTTTTGTTGTGGAGAAAGTTATGATACGTTTCATCTAGGTCACATTAATTGTCCTGATTGTccaaaatcatttaaaacacaaatgaGCTATGAACGCCATATATTCATAACACATTCAGAGTTTGATGATCATCCCTGCAGTATTTGCAATGCTAAATTACGCAGTGCTAATCTATTAAAATTACACGAAGAGCAACATCGCAATCGAGGAAAACCATTCGCCTGTAAGCTTTGTGGCAAAGATTTTACACGTTCGTATCATTTGAGTCGTCATCAAAAATACTCCTCTTGTTCGGCCAATGAAAACGATACTTTGCATTGTAAAGTCTGTAACAAGGCATTCTATCGTTTAGATAATTTAAGAGCTCATCTTAAACAGCACTTGGGCACTCAGCAAACTAAGAAATCGGAATATATGTGTCCAATATGTAAAAAGTGCTTCTATAGCTTGTCAACATTAAAtattcataCACGTACTCATACGGGTGAAAGGCCATTTGATTGTGATTTATGTGAGAAAAAATTTCCATCattaattgctttaaaaaaacatagaCGCTATCATACAGGAGAAAAACCTTATACTTGTTCAGTgtgtaaGCAATCATTTGCAGTCAAGGAAGTTTTAAATCGTCATATGAAACGTCACACAGGCGATAGACCCCATGTTTGCAATGAATGTGGCAAAAGTTTCATACAAGGCACACAACTTCGCACTCATGTCAAGATCCATTTAAGGCCTTACAAATGTGACCAATGTCCAGAAAAATATAGAACCGAAAAGCAgtTGCAAAATCACATGAAAGAACATAATAAAACAAAGCGAAAGGGACGTACACCTATGGCAAACAAATGTGACATATGTAAGAAAGGTTTCAAAACAGAACTAGAGTTTAATAATCACATGCAATTGGGTACTCATAtcaCACCTGCCCAAAGACGTAAATTGAAAACTCGTACCGATTGCGCAgtgtgtaaagaaaattttgattcTGTACAAAGTCTTCAATTCCATATACTTAAAGTACATCAAGAAGATCCCGAAACATTTGTAAATGATGACCCCTTTGCCACGTCTTCGAGAGTTACAGACAATGACTCACTGCTAATGCCCGCACcgaaagttattaaaattgaGGACTCTCAAGGTGAACGCATAGAATTTGTTACCACTAACAGTGAGGGTAAAATTCTAAATACCAATATTCAGGGTCTGAATCAACGAGAAATTTTAAGTTCCGAAAGCAAAACCGTGGAATCGAACAAGGTGCGGATTTTAGAGCAGTACATTAGTTCCGAAAGCAAAAGCGTGGAATCGAACAAGGTGCGGATTTTAGAGCAGTACATAATTGATGACCGTCCTTCTACATCCACCGGTGCTGGCAGTAAACAGACTTTATTTCTATCAAATGAAACTTTTACTGTTATTCCTTTAGAATCGCATGGTGGCATAATAGAGCCAGTTACTACTAACGCACTGCCCAGTAATATAGTAAGCCCAGAATGTAAAAAGGAACAACGTAAGACTTTGGCAGAAAGTTTGGCTGCTGCTATAGCCGATGAAGATGAGTCTGTATTAGAAGCTGCTAATGACGGGCCAGAATACTCCGAAGAAGATTTAAAGCTTAAAGACAATGTTAGCAAATTACTAGACATGCTGGTAGACAGTGTCACTCTAAAGAAATTTGGGTGGCCAGACATTATGGAAGAAActGTACTTTGTAAGGTTATTGAAAACTGTGGTCATGATTTAACTAAAGATCAATTCAACTATAGCTCTTGGGATTATGCCAGTCGAATGCGCGAATACGTTAAATTACTTTTCACTGTGGTCATTCATAATGATTCTATTAAAGAATTACTTAATAACTATCCCATTGATGAAGTTATTGAATATGTTTTAGGcaatgatgatgacgatgatgattTCGATGAAGATGATAAAAATGCAGTTAAAGATGCAGAAAATGACAAAACTGCCTTAAAAACCATTAAGCGGGAAAATGACGATTAA
Protein Sequence
MSLKKEPKQASLTRRSSLGIKILNDEKITAPLPLKIPVMTSVPLSPPKQITLSIAKPKKTLKQKNMDHYVMKTVKGEKNTDTGVEESETIDFILTENDELSKASGEITEELLLSDEDDHDSTFTGSTQEIVEHVCGKCYRTFRRIKSLKKHLDYCRFDSGYHLRKAEMLKNLEKIEKDAIIMENKDVCFCCGESYDTFHLGHINCPDCPKSFKTQMSYERHIFITHSEFDDHPCSICNAKLRSANLLKLHEEQHRNRGKPFACKLCGKDFTRSYHLSRHQKYSSCSANENDTLHCKVCNKAFYRLDNLRAHLKQHLGTQQTKKSEYMCPICKKCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLIALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGDRPHVCNECGKSFIQGTQLRTHVKIHLRPYKCDQCPEKYRTEKQLQNHMKEHNKTKRKGRTPMANKCDICKKGFKTELEFNNHMQLGTHITPAQRRKLKTRTDCAVCKENFDSVQSLQFHILKVHQEDPETFVNDDPFATSSRVTDNDSLLMPAPKVIKIEDSQGERIEFVTTNSEGKILNTNIQGLNQREILSSESKTVESNKVRILEQYISSESKSVESNKVRILEQYIIDDRPSTSTGAGSKQTLFLSNETFTVIPLESHGGIIEPVTTNALPSNIVSPECKKEQRKTLAESLAAAIADEDESVLEAANDGPEYSEEDLKLKDNVSKLLDMLVDSVTLKKFGWPDIMEETVLCKVIENCGHDLTKDQFNYSSWDYASRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDDDDDDFDEDDKNAVKDAENDKTALKTIKRENDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00045491;
90% Identity
iTF_01235972;
80% Identity
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