Pobe002538.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- su(Hw)
- Assembly
- GCA_949628195.1
- Location
- OX451215.1:6162554-6167374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.001 0.15 14.1 2.3 1 20 131 150 131 152 0.94 2 12 5.4e-06 0.00083 21.3 0.3 2 23 202 224 201 224 0.94 3 12 0.25 38 6.6 0.1 1 23 230 252 230 252 0.94 4 12 5.4e-06 0.00082 21.3 1.9 1 21 259 279 259 280 0.95 5 12 0.00015 0.023 16.7 5.0 2 23 292 313 291 313 0.96 6 12 4e-05 0.006 18.6 3.0 1 23 324 346 324 346 0.98 7 12 7.4e-05 0.011 17.7 0.8 1 23 352 374 352 374 0.97 8 12 1.6e-05 0.0024 19.8 1.0 1 23 380 402 380 402 0.99 9 12 3.3e-06 0.0005 21.9 1.0 1 23 408 430 408 430 0.97 10 12 2.2e-05 0.0033 19.4 0.9 2 23 435 456 434 456 0.97 11 12 0.0013 0.2 13.8 1.7 2 22 470 490 469 493 0.91 12 12 1.6 2.5e+02 4.0 0.2 3 23 508 529 506 529 0.93
Sequence Information
- Coding Sequence
- ATGAGtttgaaagaagaaaaagaTTCACCCACTAGATGTTCTAGTTCGGGTGTTAAAATACTCAATGATGAAAAAATAACGGCACAAATACCTTTAAATATACCTGTGATGACTTCAGTGCCCTTGTCGCCGCCTAAACAAATCACTTTGTCCATtgccaaaccaaaaaaaagttttaaaccgaacatgGATCATTATGTAATGAAAACTGTAAAAGGGGAGAAAAATACTGATACTGGAATTGAAGAAAGTGAAACGATTGATTTTGTATTGACCGAAATTAATGagtatgaaatgtcaaagccgAGTGGTGAAATAACCGAAGAATTGAATTTAAGCGACGATGAGGATAATGGCATCATTGTCGGACCTACACAGGAAATTGTTGAACATGTATgcggaaaatgttttaaaacttttaggcGGATAAAGAGTCTAAAAAAACATCTGGATTATTGTCGGTTTGATAGTGGCTATCCCTTACGCAAAgaggaaatgttaaaaaacttgGAGAAAATTGAAAAGGATGCTATAATTATGGAAAATAAAGATGTCTGTTTTTGTTGTGGAGAAAGCTACGATACGTTTCATttgggCCATATAAGTTGTCCCGATTGtccaaaatcatttaaaacacaaatgaGCTATGAACGTCATATATTTATATCACATTCGGAGTATGACGATTATCCCTGTAGTATTTGTAATGCTAAAATGCGCAGTGCAAATCTTCTAAAATTACACGAAGAACAACATCGTAGCAGAGGAAAACCATTTGCTTGCAAAATTTGTggcagagattttactcgatccTATCATTTGAGTCGACATCAAAAGTATTCCTCCTGTTCAGCCAATGAAAATGATACTTTGCATTGTAAGGTCTGCAATAAAGCATTCTATCGTTTGGATAATTTAAGATCACATTTGAAACATCATCTGGGTACACCACAAGCAAGGAAATCGGAGTACATGTGTCCCAtatgtaaaaattgtttctatagTTTGTCAACACTAAATATTCATACACGCACGCATACTGGAGAAAGACCATTTGATTGTGATTTATGTGAGAAAAAGTTTCCATCATTGGTTGCTTTAAAAAAGCATCGGCGTTATCATACGGGGGAAAAGCCTTATACTTGTTCAGttTGTAAACAATCGTTTGCTGTcaaggaagttttgaatcgcCATATGAAACGTCATACAGGCGAAAGACCTCATGTCTGCAGTGAATGTGGTAAAACATTTATACAAGGCACTCAACTTCGCAATCACATTAAGATACATCTGAGGCCCAACCAATGCGATCAATGTCCAGAAAAATTTAGAACTGAAAAGCAATTAGAAAATCACATGAAAGAACACAGTACAAAAAAGAGAAGGGGGCGCGTACCAAGGGCAAAGAAATGTGAGGTATGCAAGACAACATTTAAAACAGAACTAGATTTTAATAAGCATATGCAATTGGGTAAACATATCAcaccTGCACAAAGACGTAAGTTAAAGACTCGAACTGATTGTGCAGTTtgcaaagaaaattttgaatctGTGCAAAGTCTTCAATTTCACATACTTAAAGTTCATCAGGAAGATCCAGAAACATTCGTCAATGAAGATCCCTTTGACAATTATTCACATGTTGAAAACAATGACTCATTTGTAATGCCTGCcccaaaagtaatcaaaattgAGGATGCACAGGGTCAGCGCATAGAATTTGTCACCACCAACAGTGAAGGTAAAATTCTGAATACAAATATTCAGGGTCTAAATCAACAACAAATCTTAAATCCGGAGAGCAAAGAAACAGAATCAAATCAAGTGCATATCTTAGAGGAGTTTATAATCAATGAAAGTCCTTCAACATCAAGCAATAAACAGAATATATTCCTCTCCAACGTAGCTTTTACTGTAATACCCTTAGAATCAGACGGTAGGTTGATAGAGCCCATTGCTACAACCACATTGCCAAGTAGTGCTAATACAAGCCCTGAATGCAAAAAAGAACAACGTAAATCATTGGCTGAAAGTTTAGCAGCGGCTATAGCCGATGACgatgtaaatatattagaaatagGGGATGAATCAACACAACTTTCCGAAGAAGATTTAAAATTGAAAGACAATGTTTGCAAACTATTGGATATGTTGGTGGACAGTTGTACACTTAAGAAATTTGGTTGGCCGGATATTTCAGAAGAAACCGTACTTTGTAAGGTTATTGAAAATTGTGGACATGACTTGTCTAAAGACCAATATAACTATACCGATTTGGAATACGCCAGCCGCATGCGTGAATATGTTAAATTACTTTTCACTGTTGTCATTCACAACGATTCCATCAAAGAATTACTCAACAATTATCCAATCGATGAAGTTATTGAATATGTTTTGGGTAACGATGAagacgatgatgatgacgagGAGGACAATGCAAACGAAATAAAACATAAAGGAGATGATAAGTCTTTTCTAAAAGCCATCAAACGTGAGGATGatgacaaataa
- Protein Sequence
- MSLKEEKDSPTRCSSSGVKILNDEKITAQIPLNIPVMTSVPLSPPKQITLSIAKPKKSFKPNMDHYVMKTVKGEKNTDTGIEESETIDFVLTEINEYEMSKPSGEITEELNLSDDEDNGIIVGPTQEIVEHVCGKCFKTFRRIKSLKKHLDYCRFDSGYPLRKEEMLKNLEKIEKDAIIMENKDVCFCCGESYDTFHLGHISCPDCPKSFKTQMSYERHIFISHSEYDDYPCSICNAKMRSANLLKLHEEQHRSRGKPFACKICGRDFTRSYHLSRHQKYSSCSANENDTLHCKVCNKAFYRLDNLRSHLKHHLGTPQARKSEYMCPICKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKTFIQGTQLRNHIKIHLRPNQCDQCPEKFRTEKQLENHMKEHSTKKRRGRVPRAKKCEVCKTTFKTELDFNKHMQLGKHITPAQRRKLKTRTDCAVCKENFESVQSLQFHILKVHQEDPETFVNEDPFDNYSHVENNDSFVMPAPKVIKIEDAQGQRIEFVTTNSEGKILNTNIQGLNQQQILNPESKETESNQVHILEEFIINESPSTSSNKQNIFLSNVAFTVIPLESDGRLIEPIATTTLPSSANTSPECKKEQRKSLAESLAAAIADDDVNILEIGDESTQLSEEDLKLKDNVCKLLDMLVDSCTLKKFGWPDISEETVLCKVIENCGHDLSKDQYNYTDLEYASRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDEDDDDDEEDNANEIKHKGDDKSFLKAIKREDDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045491;
- 90% Identity
- -
- 80% Identity
- -