Cruf006074.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- su(Hw)
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010003408.1:19579-24324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00075 0.041 14.3 2.1 1 20 141 160 141 162 0.94 2 12 6.4e-06 0.00035 20.8 0.4 3 23 213 234 211 234 0.93 3 12 0.068 3.7 8.2 0.4 1 23 240 262 240 262 0.94 4 12 2.2e-06 0.00012 22.3 2.1 1 21 269 289 269 290 0.95 5 12 1.4e-05 0.00078 19.7 2.2 3 23 303 323 301 323 0.96 6 12 1.6e-06 8.8e-05 22.7 3.4 1 23 334 356 334 356 0.98 7 12 6.5e-05 0.0036 17.7 0.8 1 23 362 384 362 384 0.97 8 12 1.4e-05 0.00076 19.8 1.0 1 23 390 412 390 412 0.99 9 12 4.1e-06 0.00022 21.5 0.6 1 23 418 440 418 440 0.97 10 12 1.6e-05 0.00089 19.6 1.0 1 23 444 466 444 466 0.98 11 12 0.0035 0.19 12.2 0.3 2 21 480 499 479 503 0.92 12 12 1.4 78 4.0 0.2 3 23 518 539 516 539 0.93
Sequence Information
- Coding Sequence
- ATGAGTTTAAAAGAAGAGAAATCAAAACTTGCAACAACATCATCGGCATCTGCTAAAAAACGTTCCAGTTCAGGTGTCAAAATACTAAATGATGAAAAAATTACCACTCCTATACCATTTAAAGTACCTGTAATGACTTCAGTACCTTTATCGCCACCCAAACAGATCACTTTGTCTATAGCAAAACCAAAAAAAGAAATGAAACAACAAAACATGGATCACTATGTCATGAAAACAGTAAAAGGCGAAAAAAATTCAGATACTGGTGTAGAGGAAAGCGAAACCATAGATTTTGTATTGGCGGAGAATAATGAAGAAGAGCTGTCCAAACCAAGTGGAGAAATTACCGAAGAATTACATTTGAGTGATGATGACGATCGAGATTCAACATTTACTGCATCAACACAAGAGATTGTGGAGCATGTTTGTGGAAAATGTTATAAGACTTTTAGGCGCATAAAGAGTTTGAAAAAACATTTGGATTATTGCCGTTTCGATAGCGGTTATCATGTACGCAAAGCGGAAATGTTAAAGAATTTGGAGAAAATCGAAAAAGATGCAATTATAATGGAAAATAAAGATGTTTGCTTTTGTTGTGGCGAAAGTTATGATACTTTCCATTTGGGTCACATCAATTGCCCGGACTGTCCAAAATCGTTTAAAACTCAAATGAGCTATGAACGTCATATATTCATAACTCATTCCGAATTCGATGACCATCCCTGCAGTATTTGTAATGCTAAATTACGCAGTGCAAATCTTTTAAAATTACATGAAGAACAACATCGTAATCGTGGCAAACCATTTGCTTGTAAAATTTGTGGTAAAGATTTCACAAGATCCTATCATTTGAGTCGTCATCAAAAGTATTCTTCTTGTTCGGCAAATGAAAATGATACTATGCATTGTAAAGTTTGTAATAAAGCCTTTTACCGTTTGGATAATTTAAGAGCTCATTTAAAACAACATTTGGGTACTCAAAATACTAAGAAATCAGAATACATGTGTCCTATATGTAAGAAATGTTTCTACAGTTTGTCTACTTTAAATATTCACACACGTACTCATACGGGCGAAAGACCTTTTGATTGTGATTTATGTGAAAAAAAATTTCCCTCATTGGTGGCTTTGAAAAAGCATAGACGTTATCATACTGGTGATAAACCCTATACTTGTTCTGTGTGTAAACAATCATTTGCTGTTAAGGAAGTTTTAAATCGTCATATGAAACGCCATACTGGAGAGAGACCTCATGTCTGCAGTGAATGCGGTAAAAGTTTTATCCAAGGAGTCCAGTTACGTACTCATATTAAGATCCATTTAAGACCCTACGAATGCGACCAATGTCCAGAGAAATTTAGAACTGAGAAACAATTAGAGAAGCATACGAAAGAGCATAGCAGCACCAAACGAAGAGGACGTACTCGTATGGTTAATAAGTGTCTTATATGTAAGAAAGGTTTTAAAACTGAACTAGAGTTTAATAATCACATGGAGGCAGGAGAACATACAACTCCCGCCCAACGGCGTAAATCTCGAACTCGTACAGATTGTGCCGTCTGCAAAGAAAACTTTGATTCCGTTCAAAGTCTACAATTCCATATTCTTAAAGTCCATCAAGAAGATCCAGAAACATTCGTCAATGAAGATCCCTTCGAGACAACAACACCGACTAAAGATAATGATTCCATATTAATGCCTGCACCAAAAGTAATTAAAATAGAAGATGCTCAAGGACAACGTATTGAATTCGTTACCACCAACAGTGAAGGCAAAATCCTAAATACCAATGTACAAGGACTAAATCAACAACAAATCCTAAGTCCTGAAAAGAACCCATCTGATGCTAACAAAGTACAAATCCTTGAGCAATATATTATTGATGAAGGTCCATCAACATCAGCTGGAGTTAATAATAAACAAACTATAATTTTATCTAACGAAGCTTTTACAGTTATACCTTTGGAATCAAACGGTGGTATAATTGAACCCATTACTACAAATACTTTACCCGCTAATATCATAAGTCCTGAATGTAAAAAGGAGCAACGTAAAAGTTTGGCTGAAAGTTTGGCAGCCGCTATAGCTGATGATGATGTTGCAATGTTGGATAATAGCAAAGGTGATGAAGAATATTCTGAGGAAGATTTAAAACTTAAGGATAATGTTAGTAAACTGTTGGATATGTTAGTGGATAGTACAACACTTAAGAAATTTGGTTGGCCAGAAATGTCTGAAGAAACTGTACTTTGCAAAGTTATTGAAAATTGTGGCCATGATTTATTTAAAGATCAATATAACTATGCTAATTGGGATTATGCCAGTCGTATGCGTGAATATGTAAAATTATTGTTTACCGTTGTTGTACACAACGATTCCATTAAAGAATTACTCAACAATTATCCCATTGATGAAGTTATTGAATATGTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACCTATTAAACGTGAAAAAGACGATTAA
- Protein Sequence
- MSLKEEKSKLATTSSASAKKRSSSGVKILNDEKITTPIPFKVPVMTSVPLSPPKQITLSIAKPKKEMKQQNMDHYVMKTVKGEKNSDTGVEESETIDFVLAENNEEELSKPSGEITEELHLSDDDDRDSTFTASTQEIVEHVCGKCYKTFRRIKSLKKHLDYCRFDSGYHVRKAEMLKNLEKIEKDAIIMENKDVCFCCGESYDTFHLGHINCPDCPKSFKTQMSYERHIFITHSEFDDHPCSICNAKLRSANLLKLHEEQHRNRGKPFACKICGKDFTRSYHLSRHQKYSSCSANENDTMHCKVCNKAFYRLDNLRAHLKQHLGTQNTKKSEYMCPICKKCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGDKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQGVQLRTHIKIHLRPYECDQCPEKFRTEKQLEKHTKEHSSTKRRGRTRMVNKCLICKKGFKTELEFNNHMEAGEHTTPAQRRKSRTRTDCAVCKENFDSVQSLQFHILKVHQEDPETFVNEDPFETTTPTKDNDSILMPAPKVIKIEDAQGQRIEFVTTNSEGKILNTNVQGLNQQQILSPEKNPSDANKVQILEQYIIDEGPSTSAGVNNKQTIILSNEAFTVIPLESNGGIIEPITTNTLPANIISPECKKEQRKSLAESLAAAIADDDVAMLDNSKGDEEYSEEDLKLKDNVSKLLDMLVDSTTLKKFGWPEMSEETVLCKVIENCGHDLFKDQYNYANWDYASRMREYVKLLFTVVVHNDSIKELLNNYPIDEVIEYVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIKREKDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045491;
- 90% Identity
- iTF_01194572;
- 80% Identity
- -