Xsyl005627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota sylvarum
Gene Symbol
sip1
Assembly
GCA_905220385.1
Location
LR999957.1:66859168-66870217[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.5e-96 4.8e-92 309.1 10.2 2 275 393 659 392 659 0.98
2 2 0.11 1.5e+03 -0.9 0.0 157 190 671 703 664 713 0.69

Sequence Information

Coding Sequence
ATGTCCGACAATGAATACGAGGCTTTTGAAATCAACGACTACGATTTGGCAAATGAATTCAATCCAAATCGACCGCGACGAAAATTGACAAAAAATCAACAGATTTATGggatATGGGCTGATAGCGACAGCGACGATGATAGTGAAGTAGAGATGACTGGCCGCCGTGGTAAGGGCAGAAGCTCTGGTCCCGTAAACTTTGTAACTGGCGGTATACAGCAGTCCGGTGGCTTTAAGCTCGATGAAAAGGACAAAGATGATAACAATCAGATCACAGATGAAGaggacgatcatccagcacaacgagggACTAAAGACGAAGATGCCAACTCCGCCAGTAATTCCTCATCTGATGAAGagaaagcaacaaaaccaacgCGTATGGGATTCGGAATGCAACAGAAACAATCGTCTTCCAGCAGTAAGCCAGTGGGTGCATGGGAGCAGCACACAAAAGGAATAGGCGCAAAATTGTTACTTCAAATGGGATACAAACCCGGCAAGGGTTTGGGTAAAGATTTGCAAGGTATAACCCAACCGGTGCAAGCACACGAGCGAAAAGGACGCGGTGCTATTGGTGCATATGGTCCAGAGACGCCTGCAAGCATCGGCGACAAGCTACAgcataaagaaaaagaagacgaAGACATTCGCGAAGCAAAAGAGTTTAAGGAGAAACTAaacaaatggaagagagacgacAGTAAGAAGGAGACGAAAAAAAATCGTTACTACTACCGCAGTGTAGAGGAGGTGATAGAGAAAGGAAAGAAATCCTCGGGAATAATGCCCGATAAACTGAGTAAGAAACTAGGTAATGTTCCAGTGATTGATATGACTGGCCCTGAGAAACGTGTGCTCAGTGGATATCATGCTTTAGGGCAGACGAAAATCATCGACGAAGATCTTTACGACTTGCAAGCTGCCAAGAAGACCACTGGTTTCGCTTTGCCAGAGTTAATGCATAATCTAAATCTAATTGTCAACCTCTGCGAACAGGATATCATTGCATTGGACAAGGCAGAACGTGAAGCAACAGACAGACAGGATACTCTTGAGCATGAAAAGCGAAGCCTCGAAAAAATAGTGCGTCTAGAAGAGGATCATATAGATACCTTGGAGAAGGCTTTGGTATTGGTTGAAGAACTCACTTCGAATCCGGAAACTCTGGCTCTCGGTCGAGCAGAGAACATATTCATCGAGTTACAGCGCGATTTCGCTGCAGAATACAAAGAATTCGCATTGGGTGATCTTGCGGCTGGTGTTATTGCGCCATTGGTCAATAATGAATTGAAGACATGGAACCCACTTGAAGAACCGACGAGATTTATTGATTCTATTAAGAAATGGAGGACCATTTTGCACATGCATCAGTCTGAAGAGCGAAATAATGTCTTTGATCCATATTCGTCGTTGGTTTGGGCTGGTGTCATACCAAGCTTTAGATCGACTATAAGTGAATGGAATCCGAAGATGCATCAGAAGATGGCAGCCCTTTTGGACTGTTGGGCCCCACTATTTCCCACATGGGTGTTGGACAATGTACTCGAACAGTTAATTTTACCACGTCTCATTGGTGGTGTAAATGAATGGGATCCACTCACAGATACTGTTCCCATTCATAGTTGGATTCTGCCATGGTGCACGATTTTGGGACACAAGATGGAGGAGTATATATATCCGACTATTCGAGAGAAATTAGGTAACGCTCTACAAGCTTGGATACCACAAGATCGTTCAGCAAGGGCAATGCTCACCCCATGGAAGGGAGCATTCGACGCAGGAGAGATGCAAGCGTTTTTGCTTAAACACATCATTCCGAAGTTGCAAATGGCACTCAGTGAGATGGTCATTAATCCTTTGCAGCAGGATTTAGAACTCTGGAATCAGGTCTGGGAATGGAATGAACTAATCCCTCCTCTGCTGATGGGACAAATTCTAGATAAGTGTTTCTTCCCCAAATGGATGCAAGTCCTTGTTCTCTGGCTCAATCAATCACCGGACTTTGATCAAATCTCCCGCTGGTACACTGGATGGAAGACAGTTCTTGGTGAGGAATTATTAAAACAGCCCATGATCAAGGAACACCTACGGCGAGCACTTGAAATGATGCATCGGGCAACTGAAACCGTATCTTCGCCACAAGCTACACCCGCACCAGTAGCACCACCACAACCAGCAGCATCAAGTACTTCTTCAGCTGGTCCTCCAGCTCTAATGGATCTACAAATTACTCCCCCTGCGCAGTTAGAGTTTAAAGAACTTGTTTCGCAAAAGTGTGCAGAACGTGGTATAATTTTCGCACCAATGCCTGGGCGTAGGGAGTTCGGGAAACAGGTCTATCGAGTTGGAAAGTTATTTTGCTATATCGACCGTAATGTTGTTATGCTGAGCGATGGGAGCTTGAAAAACTGGACACCAACCTCACTGGGATTAACTATAGAAAGAGCAGTTTCTGGATAG
Protein Sequence
MSDNEYEAFEINDYDLANEFNPNRPRRKLTKNQQIYGIWADSDSDDDSEVEMTGRRGKGRSSGPVNFVTGGIQQSGGFKLDEKDKDDNNQITDEEDDHPAQRGTKDEDANSASNSSSDEEKATKPTRMGFGMQQKQSSSSSKPVGAWEQHTKGIGAKLLLQMGYKPGKGLGKDLQGITQPVQAHERKGRGAIGAYGPETPASIGDKLQHKEKEDEDIREAKEFKEKLNKWKRDDSKKETKKNRYYYRSVEEVIEKGKKSSGIMPDKLSKKLGNVPVIDMTGPEKRVLSGYHALGQTKIIDEDLYDLQAAKKTTGFALPELMHNLNLIVNLCEQDIIALDKAEREATDRQDTLEHEKRSLEKIVRLEEDHIDTLEKALVLVEELTSNPETLALGRAENIFIELQRDFAAEYKEFALGDLAAGVIAPLVNNELKTWNPLEEPTRFIDSIKKWRTILHMHQSEERNNVFDPYSSLVWAGVIPSFRSTISEWNPKMHQKMAALLDCWAPLFPTWVLDNVLEQLILPRLIGGVNEWDPLTDTVPIHSWILPWCTILGHKMEEYIYPTIREKLGNALQAWIPQDRSARAMLTPWKGAFDAGEMQAFLLKHIIPKLQMALSEMVINPLQQDLELWNQVWEWNELIPPLLMGQILDKCFFPKWMQVLVLWLNQSPDFDQISRWYTGWKTVLGEELLKQPMIKEHLRRALEMMHRATETVSSPQATPAPVAPPQPAASSTSSAGPPALMDLQITPPAQLEFKELVSQKCAERGIIFAPMPGRREFGKQVYRVGKLFCYIDRNVVMLSDGSLKNWTPTSLGLTIERAVSG*