Rros019541.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhingia rostrata
Gene Symbol
sip1
Assembly
GCA_949824845.1
Location
OX463758.1:12556092-12559058[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.5e-93 4.5e-89 299.4 15.8 2 275 389 655 388 655 0.97
2 2 0.13 1.3e+03 -0.5 0.0 157 192 667 701 660 743 0.79

Sequence Information

Coding Sequence
ATGTCGGACAATGAGTACGAGGCATTTGAAATCACCGACTATGATCTGGCAAATGAATTCAATGTCAATCGTCCGCGACGAAAGTTGACAAAAAATCAACAGATTTATGGAATATGGGCTGACAGCGACAGCGACAATGAAAGCGAAGTCGAGATGACTGGGCGCCGCGGCAAAGCCCGAAGTTCTGGACCTGTAAGCTTCGTTACCGGTGGCATTCAACAGTCTGGCGGACTGGAAAACGACCAAGATGAGGATAATCAAATTACAGATGAAGaGGACGACCATCCATCACGTCGCGACATCAAGGACAAACCTGCCCAAAGCAACAGCTCATCATCAGAGGAAGAATCCGCAAACCCAGCACGAATGGGATTCGGTAGCAAGCAACGCCAGCCTTCTTCAAGCAACAAGCCAATGGGTGCGTGGGAACAACATACAAAGGGAATTGGAGCTAAACTATTGCTTCAGATGGGGTACAAACCAGGCAAGGGCTTGGGAAAAGACTTGCAAGGCATTGCGCAGCCAGTGCAAGCTCACCTGCGAAAGGGACGTGGCGCCATCGGTGCGTATGGTCCAGAGACACCAGCCAGTATCGGTGACAATGTCCCGCACAAGCAAATCGAAGACCCAGACATCCGCGAGGCAAAGGAATTCAAGGAGAAACTCAACAAATGGAAGCGGGACGATACAAAGAAAGAATCGAAGAAGAATCGCTACTACTACCGCAGCGTTGAGGAGGTGATCGAGAAGGGCAAAAAGTCATCCAGTGGGCTTATGCCGGATAAACTGAGCAAACGATTAGGAAATGTCCCCGTCATTGATATGACTGGCCCAGAAAAGCGCGTGCTCAGTGGGTACCACGCCCTGGGACAGACGAAAATAACCGACGAGGACCTATACGAGCATCAACCAGCAAAAAAGCAAATCGGCTTCGCTCTGCCCGAACTGATGCACAACCTAGATCTGATTGTGAACCTCTGCGAGCAGGATATCATTTTATTGGACAAGACCCAGCGTGAGGCGACAGACCAACAGGACGCTCTTGACTATGAGAAGAAAAGTTTAGAGAAGATTGTTCGTCTGGAGAAGGACCACATAGACACACTGGAGAGGGCTCTCAAACTAGTCGAAGAACTGACCACCAGTGAGGGAAATCTGAATCTGGCTCGAGCGGAGAGCATATTCATCGAACTGCAAAGGGATTTCGCCGCAGAGTACAAGGAATTCGCGTTGGGCGATCTAGCAGCAGGTGTTATAGCTCCGTTGGTCAACAACGAACTAAAATCATGGAGGCCATTGGATGAGCCGACTAGATTTATCGACACCATCAAAAAGTGGCGCACCATCCTCGACATGCATCATTCCGAGGATCGAAAGAATGTCTTTGATCCATACTCCTGGCTTGTATGGGCTGGAGTCATACCCAGCTTTAGGTCGACAGTCAGCGAATGGAATCCTAAGGTGCATCAGAAAATGGCAGCGCTTTTGGACTCCTGGGCTCCGTTATTACCCACATGGGTGTTGGACAATGTACTCGAGCAGCTAATATTACCGCGACTTATTGGTGGGGTGAAGGAATGGGATCCGCTAACCGACACGGTCCCCATTCATAGTTGGATTCTACCATGGAACGTCATTTTAGGGCACAAGATGGAAGAATTTATATTGCCCACAATTCGAGAAAAACTGGGCAATGCATTGCAGGCGTGGATGCCACAAGATCGATCGGCAAGGGCGATGCTTACACCATGGAAGGAGGCTTTTGATGAAGGAGAAATGCAGGCTTTTCTGCTAAAACATATTATTCCAAAGCTGCAGATGGCACTGAACGAAATGGTCATCAATCCACTGCAACAGAATTTGGAACTATGGAATCAAGTCTGGGAATGGAACGAACTGATACCGCCTCTGTTAATGGGTCAAATACTTGACAAATACTTTTTCCCCAAATGGATGCAAGTTCTTGTCCTCTGGCTTAATCAATCGCCTGACTTTGATCAAATCTCACGATGGTACACCGGATGGAAGACGGTTCTGGGCGAGGAACTACTTAAGCAGCCAATGATCAAAGAACATCTGCGACGAGCGCTTGAAATGATGCACCGAGCAACAGAAACTGTGTCCACAACGCAACCCACACCTACCCCAGTGGCACCACCAGGGCCTCAGATGACAACATCAAGTGTTATAAAAGGCCCGCCTGCATTGATGGATCTTCAAATTGCACCGCCAACGCAGTTGGAGTTTAAGGAACTTGTTTCGCAAAAGTGCGCCGAGAGGGGTATTATTTTCGCACCAATGCCCGGTCGCAGGGAATTTGGCAAACAGGTGTATCGTGTTGGGAAACTATTTTGCTATATCGATCGCAATGTGGTTATGCTGAGTGATGGAAGTTTGAAAAACTGGACACCAACTTCGTTGGGCTTGACTATAGAACGAGCTTTATCTGGTTAA
Protein Sequence
MSDNEYEAFEITDYDLANEFNVNRPRRKLTKNQQIYGIWADSDSDNESEVEMTGRRGKARSSGPVSFVTGGIQQSGGLENDQDEDNQITDEEDDHPSRRDIKDKPAQSNSSSSEEESANPARMGFGSKQRQPSSSNKPMGAWEQHTKGIGAKLLLQMGYKPGKGLGKDLQGIAQPVQAHLRKGRGAIGAYGPETPASIGDNVPHKQIEDPDIREAKEFKEKLNKWKRDDTKKESKKNRYYYRSVEEVIEKGKKSSSGLMPDKLSKRLGNVPVIDMTGPEKRVLSGYHALGQTKITDEDLYEHQPAKKQIGFALPELMHNLDLIVNLCEQDIILLDKTQREATDQQDALDYEKKSLEKIVRLEKDHIDTLERALKLVEELTTSEGNLNLARAESIFIELQRDFAAEYKEFALGDLAAGVIAPLVNNELKSWRPLDEPTRFIDTIKKWRTILDMHHSEDRKNVFDPYSWLVWAGVIPSFRSTVSEWNPKVHQKMAALLDSWAPLLPTWVLDNVLEQLILPRLIGGVKEWDPLTDTVPIHSWILPWNVILGHKMEEFILPTIREKLGNALQAWMPQDRSARAMLTPWKEAFDEGEMQAFLLKHIIPKLQMALNEMVINPLQQNLELWNQVWEWNELIPPLLMGQILDKYFFPKWMQVLVLWLNQSPDFDQISRWYTGWKTVLGEELLKQPMIKEHLRRALEMMHRATETVSTTQPTPTPVAPPGPQMTTSSVIKGPPALMDLQIAPPTQLEFKELVSQKCAERGIIFAPMPGRREFGKQVYRVGKLFCYIDRNVVMLSDGSLKNWTPTSLGLTIERALSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01542208;
90% Identity
iTF_01300029;
80% Identity
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