Nint024243.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoascia interrupta
Gene Symbol
sip1
Assembly
GCA_947623515.1
Location
OX392462.1:54272375-54275237[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.8e-94 5e-90 302.8 13.1 4 275 396 660 393 660 0.98
2 2 0.15 2.7e+03 -1.4 0.0 157 192 672 706 665 728 0.71

Sequence Information

Coding Sequence
ATGTCGGACAATGAGTACGAAGCGTTTGAAGTCACCGACTACGACTTGGCCAACGAATTCAACCCGAATCGTCCGCGGCGCAAATTTACAAAGAACCAACAAATCTATGGCATCTGGGCGGACAGTGACAGCGACAATGATAGCGAACCCGAGATGACCGGCCGCCGCGGTAAAGGCAGAAGCACCGGACCCGTGAACTTTGTAACCGGCGGCATACAGCAATCAGGCAGCTTTAAGAAAGACGAAAAGGACCAAGACGATGACAATCAAATTACAGATGAAGAAGACGAACGACCGGGAGCACGCAAGGCGGTCAAGGGCGAAGCAAACTCGGAAAGTAACTCGTCCTCAGAGGAAGAACGTGCGGGTCAACCGGCACGGATGGGCTTCGGCATGAAACAGCGGCAACAGCCCTCGAGTAGCAAACCGGTGGGTGCATGGGAGCAGCATACCAAAGGAATCGGAGCCAAGCTCCTGCTTCAAATGGGCTACAAGCCCGGCAAGGGTTTGGGCAAAGACCTGCAGGGTATCGCACAGCCTGTGCAGGCCCACTTACGAAAGGGACGCGGAGCGATCGGTGCCTACGGTCCCGAAACTCCAGCCACCATTGGAGACGGTGCACAGTTCAAACCCAAGGAAGACGAGGACCTTCGCGAGGCGAAGGAGTTCAAGGAGAAGCTCAACAAATGGAAGCGCGACGACAGTAAGAAGGAATCGAAAAAGAACCGTTACTACTACCGCAGCGTGGAGGAGGTCATTGAAAAGGGGAAAAAGTACTCGAGTGGCATTATTCCCGACAAGCTAAGCAAGAAGCTGGGCAACGTCCCTGTCATCGATATGACTGGCCCCGAGAAACGAGTGCTCAGCGGGTACCATGCTCTCGGACAGACAAAGATCATCGACGAAGAACTCTACGAGCCTAGTGCCACAAAGAAGCCAACAAGCTTCGCCCTGCCCGAACTGATGCACAACCTCAACCTGATCGTAAACCAGTGTGAACAGGAAATCATTTCGCTGGACAAAACCGAGCGCGAAGCCACGGACCGGCAGGACGCACTCGACCATGAGAAGCGGAATCTGGAGAAAATTGTGCGTCTTGAAAAAGATCACATCGAAACGCTCGAAAAAGCACTTGTTCTGGTCGAAGAACTGACGACCAATTCTGACAAGTTAACCCTCGTCCGAGCAGAGAAAATCTTCATCGAGCTGCAACGTGACTTTGCTGCCGAGTACAAAGAGTTTGCTTTGGGCGATCTTGCCGCTGGCGTCATAGCACCCATGGTCAATAGCGAGCTTAAGTCATGGAAACCGCTCGAGGAGCCGACAAAGTTCACCGACACCATCAAAAAGTGGCGAGGCATACTCGATATACACACCTCAAAGGAGCGCAACAATGTGTTCGATCCCTATTCGTCACTGGTCTGGGCCGGAGTCATTCCCAGCTTTAGGTCGACAGTAAACGAATGGAATCCCAAGGCGCATCAGAGAATGGCGGCCCTGCTGGACTGCTGGGCGCCACTGTTTCCCACTTGGGTGCTGGACAATGTCCTGGAGCAGCTGATTCTGCCACGACTTGTGAGTGGTGTGAAGGAGTGGGACCCTCTTACCGATACTGTGCCCATACACAGTTGGATCCTGCCGTGGAGCACGATTTTGGGTCACAAGATGGAGGAGTATATCTACCCGACGATCCGGGAGAAATTGGGTGCGGCTCTGCAGGCTTGGATGCCCAACGATCGCTCGGCCAGGGCAATGCTCACGCCGTGGAAAGGCGCTTTTGAGGCTGCTGAAATGCAAACGTTTCTCATGAAGCACATCATTCCGAAGCTGCAAATGGCGCTGAACGAGATGGTCATCAATCCGCTGCAACAGGATTTGGAACTCTGGAACCAAGTCTGGGAATGGAACGAACTAATACCTCCACTACTGATGGGACAAATACTGGATAAATTCTTCTTCCCGAAATGGATGCAAGTGCTGGTATTGTGGCTAAATCAGTCGCCAGATTTTGATCAAATCTCGCGGTGGTACACTGGTTGGAAGACAGTTCTCGGCGAAGATTTGCTCAAGCAGCCAGTGATCAAGGAGCATCTGCGCCGTGCCTTGGAAATGATGCACAGGGCAACTGAGACAGTATCCTCGCCTCTATCCACACCGATGCCAGTGGCTCCGCCGACATCATCGAGCATTTCGACGGCGCCTCCAGCTCTTATGGATCTACAGATCGCACCACCAACGCAACTGGAGTTCAAGGAGCTCGTTTCGCAAAAATGTGCAGAGCGTGGCATCATATTTGCTCCAATGCCCGGACGCAGGGAATTCGGCAAGCAAGTGTATCGAGTTGGGAAACTATTTTGCTATATCGACCGGAATGTGGTCATGCTGAGCGATGGAACTCTCAAAAACTGGACCCCAACATCATTGGGATTAACGATAGAACGAGCTGCTTCTGGATGA
Protein Sequence
MSDNEYEAFEVTDYDLANEFNPNRPRRKFTKNQQIYGIWADSDSDNDSEPEMTGRRGKGRSTGPVNFVTGGIQQSGSFKKDEKDQDDDNQITDEEDERPGARKAVKGEANSESNSSSEEERAGQPARMGFGMKQRQQPSSSKPVGAWEQHTKGIGAKLLLQMGYKPGKGLGKDLQGIAQPVQAHLRKGRGAIGAYGPETPATIGDGAQFKPKEDEDLREAKEFKEKLNKWKRDDSKKESKKNRYYYRSVEEVIEKGKKYSSGIIPDKLSKKLGNVPVIDMTGPEKRVLSGYHALGQTKIIDEELYEPSATKKPTSFALPELMHNLNLIVNQCEQEIISLDKTEREATDRQDALDHEKRNLEKIVRLEKDHIETLEKALVLVEELTTNSDKLTLVRAEKIFIELQRDFAAEYKEFALGDLAAGVIAPMVNSELKSWKPLEEPTKFTDTIKKWRGILDIHTSKERNNVFDPYSSLVWAGVIPSFRSTVNEWNPKAHQRMAALLDCWAPLFPTWVLDNVLEQLILPRLVSGVKEWDPLTDTVPIHSWILPWSTILGHKMEEYIYPTIREKLGAALQAWMPNDRSARAMLTPWKGAFEAAEMQTFLMKHIIPKLQMALNEMVINPLQQDLELWNQVWEWNELIPPLLMGQILDKFFFPKWMQVLVLWLNQSPDFDQISRWYTGWKTVLGEDLLKQPVIKEHLRRALEMMHRATETVSSPLSTPMPVAPPTSSSISTAPPALMDLQIAPPTQLEFKELVSQKCAERGIIFAPMPGRREFGKQVYRVGKLFCYIDRNVVMLSDGTLKNWTPTSLGLTIERAASG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01542208;
90% Identity
-
80% Identity
-