Msca003677.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- sip1
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:55180349-55187291[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-93 7.7e-89 299.9 14.4 2 275 395 661 394 661 0.98 2 2 0.061 2.1e+03 -0.0 0.0 157 192 673 707 666 715 0.78
Sequence Information
- Coding Sequence
- ATGTCTGGAAATGAGTTTGAAGCCTTCGAAGTTACTGACTATGACTTGGCCAATGAATTCAATCCAAACAGACCACGAAGGAAGCTAACGAAGAATCAGCAAATCTATGGAATATGGGCTGACAGTGATAGCGATGCTGACAGTGAAGTCGAGATGACTGGCCGCCGTCGTGGCAAAGCTCGTAACTCTGGACCCGTGAGCTTTGTCACCGGTGGAATACAACAGTCTGGCAGCTTTAAAAAAGACGAAAAAGACAAAGATGATAATAACCAAATAACTGACGAAGAGGATGATGGTCCCTCGCATCACCGAGCACTAAAGGGCAACGACGCAGACAGTAATTCGAATACTTCTTCGGATGAGGAGCAAGCAGCCAAACCAGCCCGAATGGGCTTCGGAATGCAACAGCGTCAGCCTTCGAGCAGTAATAAGCCTGTAGGAGCATGGGAACAACATACAAAAGGTATTGGAGCAAAACTTTTGCTTCAAATGGGATACAAGCCGGGCATGGGTTTGGGTAAGGATCTTCAAGGTATCGCACAACCAGTGCAGGCTCATTTGCGAAAGGGACGGGGAGCCATCGGTGCCTATGGACCTGAAACGCCTGCGTCGATAGGTGACGCAGGCCAACATAAGCCGATCGAAGATCAAGAAGAACGTGAAACAAGAGAATTCAAAGACAAGCTTAACAAGTGGAAGAAGGACGACGACGGCAAAAAGGAGTCGAAGAAAAATCGTTATTACTATCGCTCTGTCGAAGAAGTAATTGAAAAGGGAAAGAAACTCAATAGTGGTATTCTGCCAAGCACCCTGAGTAGGAAATTAGGAAATGTTCCTGTGATTGACATGACCGGACCGGAAAAACGTGTTCTAAGCGGGTACCATGCACTGGGGCAGACGAAAATCATGGACGAAGAATTATATGACCCGCGTAATAAGAAAAAGGCAACAGGATTTGACTTGCCTGAGCTGAAGCACAACCTTAATCTTATAGTGAACCAGTGTGAGCAGGAAATCATATCGTTGGACAAGGAGCAGCGCGAAGCTCAAGAAGGAATACAACAACGCGAACATGAGAAACAAAATCTCGAAAAGATAGTGCGACTGGAGAAAGACCACATTTCAACATTAGAAAAGGCTCTGGTTCTCGTTGAAGAGCTGACTTCAGATAACTTGAGTCTCTCCAGAGCTGAAAAGATATTTGTTGAGTTGCAAAAAGATTATGCTGCAGAGTATAAAGAGTTTTCTCTAGGCGATTTGGCGGCTGGAGTTATAGCACCGATGGTCAATAATGAACTCAAATCATGGAAACCTCTAGAAGAGCCTGTCAAATTCATTGacacaatcaaaaaatggcGAACCATTTTGCACATGCATAAAACAGAACAAAGAAACAATGTATTTGATCCATATTCGTCACTTGTTTGGGCTGGAGTAATACCGAGTTTTAGAGCAACAGTCAATGAATGGAACCCAAAAACGCACCAGAAAATGGCCGCTCTTTTAGACGCTTGGGCACCACTATTTCCCACTTGGGTGCTGGACAATGTCCTCGAACAGTTAATATTGCCTAGGCTAATTTCGGGAGTGAACGAATGGGACCCACTTACTGATACAATACCGATCCATAGTTGGATACTGCCATGGAATACAATTTTGGGTCATAAAATGGAGGAGCATATATTCCCGACCATTCGCGATAAATTGGGGTGTGCTCTGCAAGCGTGGACACCCCAAGATCGGTCTGCGAGAGCTATGCTCACGCCGTGGAAGGGTGCATTTGAAGCAGGAGAAATGCAAGCTTTTCTGCTGAAACATATCATTCCCAAGTTGCAATTGGCACTCAGTGATATGGTCATTAATCCACTTCAGCAAGATTTGGAACTCTGGAACCAAGTTTGGGAATGGAATGAGCTGATTCCACCGTTGTTAATGGGACAAATGCTGGATAAGTATTTCTTCCCCAAATGGATGCAAGTCCTTGTCCTTTGGCTTAATCAATCACCAGACTTTGATCAGATCTCCCGATGGTATACTGGTTGGAAAACGGTTCTCGGTGAAGAATTACTTAAATTGCCAATGATTAAAGAACATCTGCGACGTGCACTTGAAATGATGCACAGAGCTACAGAAACAGTGTCTACTCCTCAGCCAGTACCCACGCCTGTGGCACCGCCTGCGCCAACTCTGACGAGTTCATTGTTAGTTGGGCCGCCAGCACTTATGGATCTACAGATCGCCCCACCTTCGCAGTTAGAGTTTAAAGAGCTTGTGTCTCAGAAATGTGCAGAGCGTGGAGTCATTTTTGCACCGATGCCAGGTCGCAGAGAATTTGGTAAACAGGTTTATCGtgttggaaaattattttgttacatTGACCGTAACGTGGTGATGCTGAGTGACGGTAGTTTGAAAAACTGGACACCTACCTCACTGGGTTTGACTATTGAAAGAGCGTTGTCcggttaa
- Protein Sequence
- MSGNEFEAFEVTDYDLANEFNPNRPRRKLTKNQQIYGIWADSDSDADSEVEMTGRRRGKARNSGPVSFVTGGIQQSGSFKKDEKDKDDNNQITDEEDDGPSHHRALKGNDADSNSNTSSDEEQAAKPARMGFGMQQRQPSSSNKPVGAWEQHTKGIGAKLLLQMGYKPGMGLGKDLQGIAQPVQAHLRKGRGAIGAYGPETPASIGDAGQHKPIEDQEERETREFKDKLNKWKKDDDGKKESKKNRYYYRSVEEVIEKGKKLNSGILPSTLSRKLGNVPVIDMTGPEKRVLSGYHALGQTKIMDEELYDPRNKKKATGFDLPELKHNLNLIVNQCEQEIISLDKEQREAQEGIQQREHEKQNLEKIVRLEKDHISTLEKALVLVEELTSDNLSLSRAEKIFVELQKDYAAEYKEFSLGDLAAGVIAPMVNNELKSWKPLEEPVKFIDTIKKWRTILHMHKTEQRNNVFDPYSSLVWAGVIPSFRATVNEWNPKTHQKMAALLDAWAPLFPTWVLDNVLEQLILPRLISGVNEWDPLTDTIPIHSWILPWNTILGHKMEEHIFPTIRDKLGCALQAWTPQDRSARAMLTPWKGAFEAGEMQAFLLKHIIPKLQLALSDMVINPLQQDLELWNQVWEWNELIPPLLMGQMLDKYFFPKWMQVLVLWLNQSPDFDQISRWYTGWKTVLGEELLKLPMIKEHLRRALEMMHRATETVSTPQPVPTPVAPPAPTLTSSLLVGPPALMDLQIAPPSQLEFKELVSQKCAERGVIFAPMPGRREFGKQVYRVGKLFCYIDRNVVMLSDGSLKNWTPTSLGLTIERALSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542208;
- 90% Identity
- -
- 80% Identity
- -