Basic Information

Insect: Xestia rhomboidea
Gene Symbol: RREB1
Assembly: GCA_963853795.1
Location: OY970774.1:9298596-9312313[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.077 7.9 8.2 0.5 1 23 94 117 94 117 0.94

2 11 0.023 2.4 9.8 0.1 1 23 307 329 307 329 0.97

3 11 0.0012 0.13 13.8 0.4 1 23 338 360 338 360 0.99

4 11 0.00077 0.079 14.5 2.0 1 23 366 389 366 389 0.97

5 11 0.0031 0.32 12.6 1.6 1 23 743 766 743 766 0.96

6 11 0.00026 0.026 16.0 1.3 2 23 960 981 959 981 0.97

7 11 0.12 12 7.6 6.5 1 23 987 1010 987 1010 0.97

8 11 0.086 8.8 8.1 1.3 1 23 1043 1067 1043 1067 0.91

9 11 0.057 5.8 8.6 0.2 1 23 1091 1114 1091 1114 0.96

10 11 0.024 2.4 9.8 0.3 2 23 1154 1175 1153 1175 0.92

11 11 0.03 3 9.5 5.3 1 23 1181 1203 1181 1203 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.077	7.9	8.2	0.5	1	23	94	117	94	117	0.94
2	11	0.023	2.4	9.8	0.1	1	23	307	329	307	329	0.97
3	11	0.0012	0.13	13.8	0.4	1	23	338	360	338	360	0.99
4	11	0.00077	0.079	14.5	2.0	1	23	366	389	366	389	0.97
5	11	0.0031	0.32	12.6	1.6	1	23	743	766	743	766	0.96
6	11	0.00026	0.026	16.0	1.3	2	23	960	981	959	981	0.97
7	11	0.12	12	7.6	6.5	1	23	987	1010	987	1010	0.97
8	11	0.086	8.8	8.1	1.3	1	23	1043	1067	1043	1067	0.91
9	11	0.057	5.8	8.6	0.2	1	23	1091	1114	1091	1114	0.96
10	11	0.024	2.4	9.8	0.3	2	23	1154	1175	1153	1175	0.92
11	11	0.03	3	9.5	5.3	1	23	1181	1203	1181	1203	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCTGCCAGTGCCCCCGCGCCTCCCGCGGCCGAACCGCCATCTTCAcaacAAATCAAAACAGAGGAGGTCATCAGTGAAGCTAAAATCGAGGCCGACGAAGAAATGGACGGCGTTCAAATTGAAAAGCAGGAGCTGCGCGTCACTAGGACGACGAGTATCGATAGTGACAACCGATCTGACAGGAGCGAGGAGGAAGACCTAAGGAGAGCACGCAAACGTGCCGCGTCGACCTCACCATCTCCCATCCCGATGGACAAAAGAACAGCAAGGTTTGAGTGCCCCAAGTGCCGGCAGCGATTCGACTCGGTCAACGCTTTCGACATCCACCGATTCACTGCGCACAGTGACGACACCAAGACTGGCTTTGACGATCTTACCTTCGTCGATTTCTCCAGCAAAAAGTTCCCTGAAATTGCCAGAGGAGTCTGCGAGAGGAACCCCCACGTGTCAGTGACCGACCAGCGTTACAGATGTGACATGTGCTGCCGAGACTTCCCCTGTGGACAAGCTTTGGACATTCACAGGAAATCGTGCCTCTCCGCCACCCGAATTCCCAGCCCTGAAAGAGATCGCAGGGAAGATTTCTTCGCGAAATTAGATCTTAGAAACAGATCTTTTGGCATTCCCGGCACGTTGACACCACCAATGGACAGATTCACTCCCAAGTTCGATGATAATCATCTTACCAACGGCATCAGACACATCGATGCCGCTCGCGACTTGGCAGATATTCAATCGATATTAAACGTCACGTCAGCTGGCGGCCTTTTAGAGAGGCTCACTGGCACTAGAGTGTCTTTGGAAAGTTCGGTTCTTACCCCTCCAGACACCATCATCAAGGACAGAGATCAAGAGGAAACCCAAGATAACTTCGCAGCAGAGTTTAGAAGAATGAAGCTGCGTGGAGAGTTCCCCTGTAGGTTGTGCCCTGCCAAGTTCCCTAACCTAAGAGCTTTAAAGGGACACAATAGAGTGCACTTGAGCGGAACGGGCCCGGGACCTTATCAGTGTAACATGTGCCCTCATGCCTCTTTAGATAAGGCTGCGTTAGTACGTCACATGCGTACACATAACGGGGACAGACCGTATGAATGCGCTGTCTGTAATTACGCTTTTACTACCAAAGCCAACTGCGAACGTCACTTAAGGAATAGACATGCTAAAGTTACAAGAGAGGATGTGAAACGCTCAATAATTTACCATCCGTCTGAAGATCCTAATAATGATGAAGTGAATTCTAAACTAGCAAGGGATGAAGTGAAGAGATCGCTCGCCTTCCACACCCCTGACATTGATAGGCGAAACGAAAGTTCGGGACGCGATACACCATTAACGCACTTTACTCCAAGTTTCATTACCGACAGACATCCAGTCACTAACTTAACAACCAAACCACTACCATTGCCATTACCGGAGTCGCCTCTACCTCTGCCTATCCAAAGAGATGTAGAGCAGCCACAGCCTCGAATTAAAGTGAAGGGTATCGGTCAGCTAACGCAAATACCGGAGTTTAGGCCACCAGAAATCACGTACAAATCCAACGACATCTCACACGATTCGTACGATGAAGAAGCTCCCGTTGACTTGAGCACCAGTGACAATAATAGTTGTGATGTTCTTGATCTCAGTAAGAAGAAACGTGACACGGATTCTGAGGAGCCTAAGGCTGCACCACGACCGTCTTTTGAGCCCGATGCAGCGAGTGTCGCCGCTTCAGCATACGATAGAACAAGATTCCTCTTGGCCTCGCAAAGACTTTTTGAAAACTCTCTTCCCAAAATCGATCCAGCTTTCTATGCCACCCAGCTGTCGCAGCTGTACGCCGGCACAGTTCCTGGCATCCATGGTTTATCTTTGCCACCATCCTTTCCAATCGCCCCTTACTTACTTCAACCTCCGTTTTTTCCTCACCCAACTGATTCTCAGGAACTTGCCGAAATAAAACAGCACATACAGAAAGAAATCATGCGAGGCTTGAGCATGTCTGGTGGCAGACTCGTCCCTAATGACCAAGACAGTCAGCCTAAAATTGAGCCTGAGGAAGAAGAACAGAAACCACCGCCATCGATCTCACCGATACCTTCGCCACACTCTGAATCTCCACGCCCAGCAATGAATAACACTCTCGTCCCTCAAACTGATTCCGTGAAGATGGTAATAAAGAATGGTGTTCTGATGCCCAAGCAGAAACAAAGGAGGTACAGAACTGAAAGACCCTTTTCCTGCTCTCAATGTTCGGCGCGGTTTACACTCCGATCTAACATGGAACGCCACGTTAAGCAACAACATCCTCAGCACTGGAGTGTCAGAAGACCAGCTCCGAGAGCGCCACCACCGTACCCAACAcctgactcactgactgatcGCATGAAATTCGCTTTGCTAGCTCGCCATCTTGAAAGACCGTTGCAACAATCGGAACGCTCGCCAGTGCGACGAGATTCTGATGAAGTAGCCGACAATGAGGAAGATGAAGAAGATACCCTAGTAATAGACGAGGAGCCTGATCAGGAAAACAAGGCGGAAGACCACACCGCGGCGCGCCTTGCAGCCGCTGAAATCCTAATGGCTACGTGCCAACAGGAAATGACTAAAGACTTCGACCTTAAAATTGCTGGGAACTTGATCAACAAACCTGTTCCTATTATCAATGATAAGACTGAGTCTGGAACTAACTCTGTCTCGCCGACTCAAGAGCCACTGCCTATCCCGGTGGTGCCTACTCGTAGCGACGAGGAAGAAGATGAAGAGGGTCTAGTCGCCTCCACAAGTGAGGGAAATAACTCTGGCAGCGATGATAAATCAGAAACAGACACAGCTCTGCCACCAAAAAAGAAGTCAGCTTACAGTCTAGCACCCAACCGAGTATCGTGTCCCTACTGCCACCGCAAGTTCCCCTGGTCATCATCCCTCCGTCGCCATGTCCTCACGCACACCGGACAGAAACCATTTAAGTGTCCGCACTGCACACTACTCTTCACCACCAAGTCGAACTGCGACCGCCATCTATTGAGGAAGCACGGAGGTTCCGCCAGAGCGGTCCTTGCTGAACCAATCCCTGATACCGTATCCCCACCACAACCAATAAATGACGCCAGAGCAGTGCCAGAAAGGCCTTACAAATGCGTGTCTTGTCCTACCAGCACCTTTTCATCCCTCGAAACTTTAAAGAAACATATGTCGTCAAGACATGGGATTGATTCTCATCCAGATTCCCCGAACGCTGAAATTGTGGAAGAAACCAATGAAGGTGGTCTAGTCTTCAAATGCCACCTGTGTGAAGCGTCGTTTGGAGACAGGACTGGAGCCCTGTCGCACTTGGCGACAGGACACACGACGGAATATGAGCAACTGGTCAGCAAGGGCGCCTTGGATGCTGCCAGTGACAGGAGTGAAAgcgctgatgatgatgaaagggGAAAGTTTCCTGACCATGCTAACAGAAAGGTGGTCTGCGCATTCTGTATCCGTCGATTCTGGTCAGCTGAGGACCTCCGTCGCCACATGCGGACTCATTCGGGAGAGAGGCCGTTTGCTTGCGACCTGTGCCGACGTCGCTTTACCCTGAAGCACAGCATGCTGCGACACCGCAAGAAGCACCGGGAAGAAATCACTGATGATGAGGAGGCTTCCCCGCCTAATACGCCGCTTGAAGATGCTGTTACTAATGGATATCGCTACCAAGACGACGACGGCTCAGGCAATGAAATCCCTAGCAatgtcaacaacaacaactcgCCTCCCTCCGCTCCATATGAAAAAAAGCTCAAACTGGACATGACTTCGCGCAAATACTCGTCGGAGGCCGACGACCCGGAGAACAGCGACCTCATCGGCAAACTACTCGGTATCCCCGACAAAACCATCAACAAGCTACTCTCCTCCGCAGACGAAGCCGCGAAAATCCTTGGCGTGAATAAATGA
Protein Sequence: MQGAASAPAPPAAEPPSSQQIKTEEVISEAKIEADEEMDGVQIEKQELRVTRTTSIDSDNRSDRSEEEDLRRARKRAASTSPSPIPMDKRTARFECPKCRQRFDSVNAFDIHRFTAHSDDTKTGFDDLTFVDFSSKKFPEIARGVCERNPHVSVTDQRYRCDMCCRDFPCGQALDIHRKSCLSATRIPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDDNHLTNGIRHIDAARDLADIQSILNVTSAGGLLERLTGTRVSLESSVLTPPDTIIKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDIDRRNESSGRDTPLTHFTPSFITDRHPVTNLTTKPLPLPLPESPLPLPIQRDVEQPQPRIKVKGIGQLTQIPEFRPPEITYKSNDISHDSYDEEAPVDLSTSDNNSCDVLDLSKKKRDTDSEEPKAAPRPSFEPDAASVAASAYDRTRFLLASQRLFENSLPKIDPAFYATQLSQLYAGTVPGIHGLSLPPSFPIAPYLLQPPFFPHPTDSQELAEIKQHIQKEIMRGLSMSGGRLVPNDQDSQPKIEPEEEEQKPPPSISPIPSPHSESPRPAMNNTLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDSLTDRMKFALLARHLERPLQQSERSPVRRDSDEVADNEEDEEDTLVIDEEPDQENKAEDHTAARLAAAEILMATCQQEMTKDFDLKIAGNLINKPVPIINDKTESGTNSVSPTQEPLPIPVVPTRSDEEEDEEGLVASTSEGNNSGSDDKSETDTALPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAVLAEPIPDTVSPPQPINDARAVPERPYKCVSCPTSTFSSLETLKKHMSSRHGIDSHPDSPNAEIVEETNEGGLVFKCHLCEASFGDRTGALSHLATGHTTEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEASPPNTPLEDAVTNGYRYQDDDGSGNEIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEADDPENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00042987; iTF_00040259; iTF_00685860; iTF_01062276; iTF_00042125; iTF_01084657; iTF_01085813; iTF_01065086; iTF_00043935; iTF_00177601; iTF_00001538; iTF_01221992; iTF_00000704; iTF_00185664; iTF_00186648; iTF_00018530; iTF_01285954; iTF_01362056; iTF_01342532; iTF_01539140; iTF_01093543; iTF_01094417; iTF_01095353; iTF_01488071; iTF_00327395; iTF_01260489; iTF_01441451; iTF_00123745; iTF_00121860; iTF_00124699; iTF_00122847; iTF_00712386; iTF_01063216; iTF_00726850; iTF_00425872; iTF_00449635; iTF_00908323; iTF_00037284; iTF_00374660; iTF_00072325; iTF_00273989; iTF_01440486; iTF_00071847; iTF_00364425; iTF_00041259; iTF_00173643; iTF_01026795; iTF_00746221; iTF_00300686; iTF_01425518; iTF_00447663; iTF_00667951; iTF_00758671; iTF_00039280; iTF_00445585; iTF_00446606; iTF_00851217; iTF_00925235; iTF_00906579; iTF_00831639; iTF_01363479; iTF_01193144; iTF_00907418; iTF_01231098; iTF_00274779; iTF_00623547; iTF_00301628; iTF_00302589; iTF_00852220; iTF_00375743; iTF_00120908; iTF_00147987; iTF_01247547; iTF_01064159; iTF_00772428; iTF_01377870; iTF_00172239; iTF_00953041; iTF_00952247; iTF_00038226; iTF_00050324; iTF_00112052; iTF_01118777; iTF_01119774; iTF_01117785; iTF_00238196; iTF_00783925; iTF_00784748; iTF_01030645; iTF_00888711; iTF_01031492; iTF_01028743; iTF_01029679; iTF_01027769; iTF_01532565; iTF_01339446; iTF_01340657; iTF_00786327; iTF_00450552; iTF_00810520; iTF_00384090; iTF_00017700; iTF_00809594; iTF_00929114; iTF_01527771; iTF_01526525; iTF_00785566; iTF_00974175; iTF_01535359; iTF_01534336;
80% Identity: -