Basic Information

Insect: Spodoptera exigua
Gene Symbol: RREB1
Assembly: GCA_011316535.1
Location: CM022066.1:6398282-6416514[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.18 14 6.7 0.6 1 23 116 139 116 139 0.95

2 11 0.018 1.4 9.8 0.1 1 23 331 353 331 353 0.97

3 11 0.00098 0.078 13.8 0.4 1 23 362 384 362 384 0.99

4 11 0.00061 0.048 14.5 2.0 1 23 390 413 390 413 0.97

5 11 0.0025 0.19 12.6 1.6 1 23 765 788 765 788 0.96

6 11 0.0002 0.016 16.0 1.3 2 23 983 1004 982 1004 0.97

7 11 0.091 7.3 7.6 6.5 1 23 1010 1033 1010 1033 0.97

8 11 0.073 5.8 7.9 1.3 1 23 1066 1090 1066 1090 0.91

9 11 0.025 2 9.4 0.2 1 23 1114 1137 1114 1137 0.95

10 11 0.0015 0.12 13.2 0.2 2 23 1177 1198 1176 1198 0.96

11 11 0.023 1.8 9.5 5.3 1 23 1204 1226 1204 1226 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.18	14	6.7	0.6	1	23	116	139	116	139	0.95
2	11	0.018	1.4	9.8	0.1	1	23	331	353	331	353	0.97
3	11	0.00098	0.078	13.8	0.4	1	23	362	384	362	384	0.99
4	11	0.00061	0.048	14.5	2.0	1	23	390	413	390	413	0.97
5	11	0.0025	0.19	12.6	1.6	1	23	765	788	765	788	0.96
6	11	0.0002	0.016	16.0	1.3	2	23	983	1004	982	1004	0.97
7	11	0.091	7.3	7.6	6.5	1	23	1010	1033	1010	1033	0.97
8	11	0.073	5.8	7.9	1.3	1	23	1066	1090	1066	1090	0.91
9	11	0.025	2	9.4	0.2	1	23	1114	1137	1114	1137	0.95
10	11	0.0015	0.12	13.2	0.2	2	23	1177	1198	1176	1198	0.96
11	11	0.023	1.8	9.5	5.3	1	23	1204	1226	1204	1226	0.97

Sequence Information

Coding Sequence: atgatgattatggatcGAAGGAATTTCAATTCGTTTTATGGGCGTAGGCGTGGTCGACCGTCGCGGGCCATGCAGGGTGCTGCCAGcgcgcccgcgccccccgcggCTGAGCCGCCATCTTCCCAACATATAAAAACAGAAGTAATAAGCGAAGCAAAAATCGAGGCCGATGAAGAAATGGACGGAGTTCAAATTGAAAAGAAAGAGCTACGCGTCACTAGGACGACAAGCATAGACAGCGACAACCGATCAGACCGGAGCGAAGAAGATGACTCAAGGAGAGCGCGGAAACGAGCTGCCTCCACATCACCATCGCCCAAACCTCTGGACAAAAGAACAGCAAGGTTTGAGTGCCTAAAATGCCGGCAAAGGTTTGACTCGGCAAACGCTTACGACATCCACCGGTTCACTGCCCACAGCGACGACACCAAAACTGGATTTGATGACTTAACTTTCGTAGATTTCTCCAGCAAAAAATTTCCAGAAATTGCCCGAGGAGTGTGTGAGCGTAACCCACACGTATCAGTGACAGAGCAACGTTATAGATGCGACATGTGCTGTCGTGACTTTCCGTGTGGACAAGCTTTGGACATTCACAAGAAGACTTGTCTCTCTACCACTCGTATTCCCAGCCCACGTGAAGAGCGAGACCGCAGGGAGGATTTCTTTGCTAAATTAGATCTTACAAATAGATCGTTTGGGATCACGGGTACATTGACTCCGCCCATGGAACGATTTGCTTCCAAATTCGACGAAAACCACGTCGCCAACGGCATGAGACATATGGATGCCGCTTGCGACTTCGCTGATATAAAGTCAATTTTAAATGTCACATCAGCTGGCGGACTTTTAGAGAGACTCACTGGCACAAGAGTAGCTTTAGAAAGCTCAATTTTAACCCCACCTGACACTATAATCAAGGAAAGAGAGCAAGAAGAGAGTCAAGACAATTTCGCTGCTGAGTTCAGAAGGATGAAACTACGTGGAGAATTCCCTTGCCGGTTATGTCCTGCTAAGTTCCCTAACCTACGTGCCTTGAAAGGCCACAACAGAGTACATTTGAGTGGAACGGGCCCGGGACCTTATCAGTGTAACATGTGTCCCCACGCCTCTTTAGATAAGGCAGCGTTGGTACGTCACATGCGCACACATAATGGTGACAGACCGTACGAATGTGCTGTGTGCAACTACGCGTTTACGACGAAAGCTAATTGCGAGCGCCACTTGAGGAACAGGCATGCTAAAATCACAAGAGAAGACGTCAAACGTTCCATAATTTACCATCCATCCGAAGACCCTAATAATGACGAGGTCAACTCAAAATTAGCAAGAGATGAGGTGAAGAGATCTCTTGCTTTCCACACACCTGATATCGACAGGCGAAATGAAAGCACAGGACGCGACACTCCGCTCACCCATTTCAATCCTACCTTCATCACTGAGAGACACCCTGTTACAAACCTAACAAGCAAACCGCTACCGTTACCCTTGCCTGAGTCCCCACTGCCAATAACACGCGATGTGCCACAGTCCCAACCACGAATTAAAGTAAAGGGGATTGGACAACTCACCCAAATACCTGAATTCAGACAGCCAGACATAacctataaaacaaatgatatcGCACACGATTCCTACGATGAAGAAGCTCCCGTCGACTTAAGCACGAGTGACAATAACAGTTGCGATGTTCTTGATCTCAGTAAAAAGAAACGTGATGCTGACTCCGAGGAACCTAAAGCCCCACCGCGTCCATCATTCGAGCCCGACCCTGCCAGCGTCGCAGCTTCAGCCTTTGAAAAAACAAGATTCCTGTTAGCGTCACAGAGATTGTTTGAGAATTCTCTTCCCAAAATAGACCCGGCTTACTACGCATCTCAACTGTCGCAGCTATATGCTGGTGCTGTTCCAGGTATCCCTGGCTTGCCCTTGCCTCCATCTTTTCCTATCACACCTTACCTTCTACAGCCGAGTTTTTTTCCACACCCTACTGACTCCCAAGAACTGGCCGAGATAAAACAGCATATACAGAAAGAAATCATCAGGGGTTTGAGTATGTCTGGTGGCAGGCTTGTGCCCAATGAGCAGGAAAGTCAGCCCAAATTAGAGCCCGAAGAAGAAGAACAAAAGCCTCCACCGTCCGTCTCTCCGATACCATCGCCGCACTCTGAATCTCCCCGCCCACCAATTACTAATACTCTCGTTCCCCAAACTGATTCCGTAAAAATGGTAATTAAGAATGGTGTTTTGATGCCGAAGCAAAAACAAAGGCGGTATAGAACTGAAAGACCCTTCTCATGCTCTCAGTGCTCTGCTCGTTTTACGTTGCGCTCCAACATGGAACGTCACGTTAAACAACAGCATCCACAGCATTGGAGCGTGCGGAGGCCAGCGCCGAGGGCACCTCCACCATACCCCATGCCCGATAATATCAACGAGAGAATGAAGTTCGCGTTATTAGCTCGCCATCTTGAAAGGCCCTTGCAACAATCCGAACGTTCACCCGTGCGAAGGGATTCTGATGAAGTAGCCGACAATGAAGAAGATGAAGAGGATACTCTAGTCATTGATGAGGAACCAGACCAGGAAAGCAAGTCGGAAGATCATACTGCAGCACGCCGAGCAGCCGCTGAAATTCTAATGGCAACTTGCCAGCAGGAAATGGCCAAAGACTTTGATGTTAAAATCGCTGGTAACTTAATAAACAAACCTCTTCCTATCAGCAATGATAAGAACGAGTCTGGACTGAATTCAGTTTCGCCAACGCATGAGCCAATGCCTGTACCAGTGGTGCCCACTCGGAGCGACGAAGAAGAAGATGAGGAAGGTTTAGTTGCTTCGACTAGCGAGGGCAATAACTCTGGAAGCGATgaaaataaGTCAGAAACCGACACAGCTCTACCACCGAAGAAGAAGTCTGCGTACAGCCTAGCGCCGAACAGAGTATCGTGCCCCTACTGCCATCGGAAGTTTCCTTGGTCCTCATCGCTGCGACGCCACGTGCTTACACACACCGGACAGAAACCGTTTAAGTGTCCGCACTGTACCCTTCTATTCACCACCAAGTCGAACTGCGACCGCCACCTACTGAGGAAGCACGGTGGGTCCGCCAGAGCTGTGCTGGCTGAGCCAGTCCCTGACACTGTATCTCCACCGCAACCAATAAATGACTCTCGAGCGGTACCAGAACGGCCATTCAAATGCGCTTCATGTCCAACAAGCACATTTTCTTCActtgaaactttaaaaaaacacatgtcCTCAAGACACGGGTCAGATTCTCAGCCAGGCTCCCCTACCCCTGAGATCTTGGAGGAAACGAATGATGGTGGTCTAGTCTTCAAGTGTCATCTTTGTGAAGCCTCCTTCGGTGACAGAAGTGGAGCTTTGTCACACTTGGCGTCTGGCCACGCGGCTGAGTACGAACAGCTTGTCAGCAAGGGTGCTTTGGATGCTGCCAGCGACCGAAGCGAGagcgctgatgatgatgaaagaggGAAATTTCCTGACCATGCTAATAGAAAGGTGGTCTGCGCGTTCTGTGTTCGGCGTTTCTGGTCGGCAGAAGACCTCCGTCGTCACATGAGGACGCATTCCGGGGAGAGGCCGTTCGCCTGCGACCTGTGTAGACGTCGCTTTACCCTGAAACACAGCATGCTGCGGCATCGCAAGAAACATCGGGAAGAAATAACTGATGATGAAGAGCCCTCGCCCCCTCACACACCGCTTGAGGATGGTGTCACTAATGGatacCGCTACCAAGATGATGACGGTTCGGGGAGCGAGATACCAAGTAACGTGAACAACAATAACTCACCGCCCTCTGCTCCTTACGAGAAGAAGTTAAAACTTGACATGACGTCGCGCAAGTACTCGTCGGAGGCAGAAAACGACCCTGAGAACAGCGATCTTATTGGTAAACTGCTTGGAATTCCCGACAAAACCATCAACAAACTTCTCTCTTCGGCCGACGAAGCTGCAAAGATACTCGGCGTGAATAAATGA
Protein Sequence: MMIMDRRNFNSFYGRRRGRPSRAMQGAASAPAPPAAEPPSSQHIKTEVISEAKIEADEEMDGVQIEKKELRVTRTTSIDSDNRSDRSEEDDSRRARKRAASTSPSPKPLDKRTARFECLKCRQRFDSANAYDIHRFTAHSDDTKTGFDDLTFVDFSSKKFPEIARGVCERNPHVSVTEQRYRCDMCCRDFPCGQALDIHKKTCLSTTRIPSPREERDRREDFFAKLDLTNRSFGITGTLTPPMERFASKFDENHVANGMRHMDAACDFADIKSILNVTSAGGLLERLTGTRVALESSILTPPDTIIKEREQEESQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKITREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDIDRRNESTGRDTPLTHFNPTFITERHPVTNLTSKPLPLPLPESPLPITRDVPQSQPRIKVKGIGQLTQIPEFRQPDITYKTNDIAHDSYDEEAPVDLSTSDNNSCDVLDLSKKKRDADSEEPKAPPRPSFEPDPASVAASAFEKTRFLLASQRLFENSLPKIDPAYYASQLSQLYAGAVPGIPGLPLPPSFPITPYLLQPSFFPHPTDSQELAEIKQHIQKEIIRGLSMSGGRLVPNEQESQPKLEPEEEEQKPPPSVSPIPSPHSESPRPPITNTLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPMPDNINERMKFALLARHLERPLQQSERSPVRRDSDEVADNEEDEEDTLVIDEEPDQESKSEDHTAARRAAAEILMATCQQEMAKDFDVKIAGNLINKPLPISNDKNESGLNSVSPTHEPMPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDTALPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAVLAEPVPDTVSPPQPINDSRAVPERPFKCASCPTSTFSSLETLKKHMSSRHGSDSQPGSPTPEILEETNDGGLVFKCHLCEASFGDRSGALSHLASGHAAEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEPSPPHTPLEDGVTNGYRYQDDDGSGSEIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEAENDPENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01533483;
80% Identity: -