Basic Information

Insect: Tiliacea citrago
Gene Symbol: RREB1
Assembly: GCA_963921375.1
Location: OY992801.1:10074086-10096696[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.071 11 8.2 0.5 1 23 94 117 94 117 0.94

2 11 0.021 3.2 9.8 0.1 1 23 308 330 308 330 0.97

3 11 0.0012 0.17 13.8 0.4 1 23 339 361 339 361 0.99

4 11 0.00071 0.11 14.5 2.0 1 23 367 390 367 390 0.97

5 11 0.0029 0.43 12.6 1.6 1 23 746 769 746 769 0.96

6 11 0.00024 0.036 16.0 1.3 2 23 964 985 963 985 0.97

7 11 0.11 16 7.6 6.5 1 23 991 1014 991 1014 0.97

8 11 0.079 12 8.0 1.3 1 23 1047 1071 1047 1071 0.91

9 11 0.009 1.3 11.0 0.1 1 23 1095 1118 1095 1118 0.97

10 11 0.022 3.3 9.8 0.3 2 23 1158 1179 1157 1179 0.92

11 11 0.027 4.1 9.5 5.3 1 23 1185 1207 1185 1207 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.071	11	8.2	0.5	1	23	94	117	94	117	0.94
2	11	0.021	3.2	9.8	0.1	1	23	308	330	308	330	0.97
3	11	0.0012	0.17	13.8	0.4	1	23	339	361	339	361	0.99
4	11	0.00071	0.11	14.5	2.0	1	23	367	390	367	390	0.97
5	11	0.0029	0.43	12.6	1.6	1	23	746	769	746	769	0.96
6	11	0.00024	0.036	16.0	1.3	2	23	964	985	963	985	0.97
7	11	0.11	16	7.6	6.5	1	23	991	1014	991	1014	0.97
8	11	0.079	12	8.0	1.3	1	23	1047	1071	1047	1071	0.91
9	11	0.009	1.3	11.0	0.1	1	23	1095	1118	1095	1118	0.97
10	11	0.022	3.3	9.8	0.3	2	23	1158	1179	1157	1179	0.92
11	11	0.027	4.1	9.5	5.3	1	23	1185	1207	1185	1207	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCTGCCAGTGCACCCGCGCCTCCCGCGGCCGAGCCGCCATCTTCGCAACAAATCAAAACAGAGGAGGTCATCAGTGAAGCGAAAATCGAGGCCGACGAAGAAATGGACGGCGTTCAAATTGAAAAGCAAGAGCTGCGCGTCACTAGGACGATGAGCATCGACAGTGACAACCAATCTGACAGGAGTGAGGAGGAAGATTTGAGGAGAGCGCGCAAACGTGCGGCGTCCACGTCACCATCACCCATCCCGATGGACAAAAGAACAGCAAGGTTCGAGTGCCCCAAGTGCCGGCAGCGATTCGACTCGGTCAACGCTTTCGACATCCATCGATTCACTGCGCACAGTGACGACACCAAGACTGGCTTCGACGATCTTACCTTCGTTGATTTCTCAAGCAAGAAGTTCCCTGAAATTGCCAGAGGAGTCTGCGAGAAAAACCCTCATGTGTCAGTGACAGATCAGCGTTATAGATGCGACATGTGCTACAGAGACTTCCCTTGTGGACAAGCTTTGGACATTCACAGGAAATCGTGCCTCTCTAAAACCCGCATTCCTGCCAGCCCTGAACGAGATCGCAGGGAGGATTTCTTTGCCAAATTAGATCTCAGAAACAGGTCTTTTGGCATTGCCGGCACGTTGACACCACCAATGGACAGATTCACACCCAAATTCGATGACAATCATCTTACCAACGGCATAAGACACATCGATGCTGCTCGCGATTTGGCAGATATTCAATCGATATTAAACGTCACGTCAGCTGGCGGCCTTTTAGAGAGGCTCACTGGCACCAGAGTATCTTTAGAAAGTTCTGTTCTAACCCCTCCTGACACGATTATCAAGGATAGAGATCAAGAGGAAACCCAGGACAATTTCGCAGCAGAGTTCAGACGAATGAAGCTGCGTGGAGAGTTCCCCTGTAGGTTATGCCCTGCCAAGTTCCCCAACCTAAGAGCTTTGAAGGGACACAATAGAGTGCACTTGAGCGGAACGGGCCCGGGACCTTATCAGTGTAACATGTGCCCTCATGCCTCTTTAGATAAGGCTGCGTTAGTACGTCACATGCGTACACATAACGGGGACAGGCCGTATGAATGTGCTGTCTGTAATTACGCTTTTACTACTAAAGCCAACTGTGAGCGACACTTAAGGAATAGGCATGCTAAAGTCACAAGAGAAGATGTGAAACGATCAATAATTTACCACCCGTCCGAAGATCCTAATAATGATGAAGTGAACTCAAAACTTGCAAGAGATGAAGTGAAAAGATCGCTCGCTTTCCACACCCCTGACATTGATAGGCGAAACGAAAGTTCAGGACGCGATACGCCGCTAACGCACTTTACTCCAAATTTCATTACTGACAGACATCCAGTCACTAACTTAACAACCAAACCGTTACCATTGCCATTACCTGAGTCGCCTCTACCTCTACCTCTGCCTATGCCAAGAGACGTAGAACAGCCTCAACCTCGAATTAAAGTGAAGGGTATTGGTCAGCTGACGCAAATACCTGAGTTCAGGCCACCAGAAAtttcatacaagcaaaatgataTCTCACACGATTCGTACGATGAAGAAGCTCCCGTGGATTTGAGCACGAGTGATAATAATAGTTGTGACGTTCTTGATCTCAGTAAGAAGAAACGTGACACCGATTCTGAGGAGCCTAAAGCCCCACCACGTCCTTCCTATGAGCCTGACCCAGCGAGCGTCGCCGCTTCAGCATACGAAAAGACAAGATTCCTCTTAGCTTCGCAAAGACTTTTTGAAAACTCCCTTCCTAAAATTGATCCATCTTACTATGCCACACAGCTTTCGCAGCTGTACGCTGGCACAGTTCCTGGAATACCTGGTTTACCTTTGCCACCATCCTTTCCTATCGCCCCTTACTTACTTCAACCTTCGTTTTTTCCTCACCCAACTGATTCCCAGGAACTTGCCGAAATAAAACAGCACATACAGAAAGAAATAATTCGAGGTTTGAGCATGTCTGGTGGTAGACTCGTTCCCAATGACCAGGAGAGTCAACCTAAGATTGAGCCTGAAGAAGAGGAACTGAAGCCACCGCCATCGATCTCTCCAATACCTTCGCCACACCCTGAATCTCCACGCCCACCTATGAATAACACTCTCGTCCCGCAAACTGATTCCGTAAAGATGGTAATAAAGAACGGTGTTTTAATGCCCAAGCAGAAACAAAGGAGGTACAGAACTGAAAGACCTTTTTCTTGCTCTCAATGTTCAGCGAGATTTACCCTCCGGTCTAACATGGAACGCCATGTAAAGCAACAGCATCCTCAGCACTGGAGTGTGAGAAGACCAGCTCCGAGGGCGCCACCACCGTACCCAACACCCGACTCTTTGACTGATCGCATGAAATTCGCCTTACTAGCTCGCCATCTTGAAAGGCCTTTGCAACAATCTGAACGCTCACCTGTGCGACGAGATTCTGATGAAGTAGCCGAcaatgaggaagatgaagaagaTACCCTAGTAATAGATGAGGAGCCTGACCAGGAAAACAAGTCAGAAGATCATACCGCGGCGCGCCGTGCGGCAGCTGAAATCCTTATGGCTACATGCCAACAGGAAATGACTAAGGATTTCGACCTTAAGATCGCTGGAAACTTGATCAATAAGCCTGTTCCTATTACCAATGATAAGACTGACTCTGGAATGAATTCAGTCTCGCCGACTCAAGAGTCACTGCCTATTCCTGTAGTGCCTACTCGCAGTGATGAGGAAGAAGATGAAGAGGGTCTAGTAGCCTCCACAAGCGAGGGAAATAACTCTGGCAGTGATGAAAATAAATCGGAAACGGACACAGCTCTTCCACCAAAAAAGAAGTCAGCTTACAGCCTAGCGCCTAACCGTGTTTCATGTCCCTACTGCCACCGCAAGTTCCCCTGGTCATCATCCCTCCGTCGCCACGTACTCACACACACTGGGCAGAAACCTTTTAAGTGTCCACACTGCACGCTTCTCTTCACCACCAAGTCCAACTGCGACCGCCATCTATTGAGGAAGCACGGAGGTTCCGCCAGAGCTATCTTGGCCGAGCCGATCCCTGATACAGTATCCCCACCGCATCCAATAAACGACACTAGAGCAGTGCCAGAAAGGCCTTACAAATGTGTGTCTTGTCCAACAAGCACGTTCTCATCGCTCGAAACTTTAAAGAAACACATGTCTTCAAGACACGGGGCTGACTCTCAACCTGGCTCCCCAAACCCTGAAATCGTGGAAGAAACAAATGAAAGTGGTCTAGTCTTCAAATGCCATCTGTGCGAAGCGTCGTTCGGAGACAGGAGTGGAGCCCTAGCGCACTTGGCGACGGGACATACGGCGGAGTATGAGCAGCTGGTCAGCAAGGGAGCCTTAGATGCTGCCAGTGACCGGAGCGAAAgcgctgatgatgatgaaagagGGAAGTTTCCTGATCATGCGAACAGAAAGGTGGTTTGCGCATTCTGTATCCGTAGATTCTGGTCGGCCGAAGACCTTCGTCGTCACATGAGGACTCATTCCGGTGAGAGGCCGTTTGCGTGCGACCTGTGCCGACGTCGCTTCACCCTGAAGCACAGCATGCTGCGACATCGCAAGAAGCACAGGGAAGAAATCACTGATGATGAAGAGGCTTTCCCGCCTAACACGCCGCTTGAAGATGTTGTGACTAATGGATATCGCTACCAAGACGACGACGGCTCAGGCAACGAAATCCCGAGCAAcgtcaacaacaacaactctCCTCCCTCCGCTCCGTACGAAAAGAAGCTCAAACTGGACATGACATCGCGCAAATACTCCTCAGAGGCCGAAAATGACCCGGAGAACAGCGACCTCATCGGTAAATTGCTTGGAATCCCCGACAAAACAATTAATAAGCTACTCTCCTCCGCAGACGAGGCCGCAAAAATCCTTGGCGTGAATAAATGA
Protein Sequence: MQGAASAPAPPAAEPPSSQQIKTEEVISEAKIEADEEMDGVQIEKQELRVTRTMSIDSDNQSDRSEEEDLRRARKRAASTSPSPIPMDKRTARFECPKCRQRFDSVNAFDIHRFTAHSDDTKTGFDDLTFVDFSSKKFPEIARGVCEKNPHVSVTDQRYRCDMCYRDFPCGQALDIHRKSCLSKTRIPASPERDRREDFFAKLDLRNRSFGIAGTLTPPMDRFTPKFDDNHLTNGIRHIDAARDLADIQSILNVTSAGGLLERLTGTRVSLESSVLTPPDTIIKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDIDRRNESSGRDTPLTHFTPNFITDRHPVTNLTTKPLPLPLPESPLPLPLPMPRDVEQPQPRIKVKGIGQLTQIPEFRPPEISYKQNDISHDSYDEEAPVDLSTSDNNSCDVLDLSKKKRDTDSEEPKAPPRPSYEPDPASVAASAYEKTRFLLASQRLFENSLPKIDPSYYATQLSQLYAGTVPGIPGLPLPPSFPIAPYLLQPSFFPHPTDSQELAEIKQHIQKEIIRGLSMSGGRLVPNDQESQPKIEPEEEELKPPPSISPIPSPHPESPRPPMNNTLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDSLTDRMKFALLARHLERPLQQSERSPVRRDSDEVADNEEDEEDTLVIDEEPDQENKSEDHTAARRAAAEILMATCQQEMTKDFDLKIAGNLINKPVPITNDKTDSGMNSVSPTQESLPIPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDTALPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVSPPHPINDTRAVPERPYKCVSCPTSTFSSLETLKKHMSSRHGADSQPGSPNPEIVEETNESGLVFKCHLCEASFGDRSGALAHLATGHTAEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEAFPPNTPLEDVVTNGYRYQDDDGSGNEIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEAENDPENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01533483;
80% Identity: -