Basic Information

Insect: Amphipyra tragopoginis
Gene Symbol: RREB1
Assembly: GCA_905220435.1
Location: HG992011.1:13447996-13452304[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.027 1.7 8.2 0.5 1 23 81 104 81 104 0.94

2 11 0.0082 0.52 9.9 0.1 1 23 294 316 294 316 0.97

3 11 0.00044 0.028 13.9 0.4 1 23 325 347 325 347 0.99

4 11 0.00027 0.017 14.5 2.0 1 23 353 376 353 376 0.97

5 11 0.0011 0.071 12.6 1.6 1 23 728 751 728 751 0.96

6 11 9.2e-05 0.0059 16.0 1.3 2 23 946 967 945 967 0.97

7 11 0.0093 0.6 9.7 5.3 1 23 973 996 973 996 0.97

8 11 0.016 1 9.0 1.5 1 23 1029 1053 1029 1053 0.93

9 11 0.031 2 8.0 0.2 1 23 1077 1100 1077 1100 0.96

10 11 0.00067 0.043 13.3 0.2 2 23 1140 1161 1139 1161 0.96

11 11 0.01 0.67 9.5 5.3 1 23 1167 1189 1167 1189 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.027	1.7	8.2	0.5	1	23	81	104	81	104	0.94
2	11	0.0082	0.52	9.9	0.1	1	23	294	316	294	316	0.97
3	11	0.00044	0.028	13.9	0.4	1	23	325	347	325	347	0.99
4	11	0.00027	0.017	14.5	2.0	1	23	353	376	353	376	0.97
5	11	0.0011	0.071	12.6	1.6	1	23	728	751	728	751	0.96
6	11	9.2e-05	0.0059	16.0	1.3	2	23	946	967	945	967	0.97
7	11	0.0093	0.6	9.7	5.3	1	23	973	996	973	996	0.97
8	11	0.016	1	9.0	1.5	1	23	1029	1053	1029	1053	0.93
9	11	0.031	2	8.0	0.2	1	23	1077	1100	1077	1100	0.96
10	11	0.00067	0.043	13.3	0.2	2	23	1140	1161	1139	1161	0.96
11	11	0.01	0.67	9.5	5.3	1	23	1167	1189	1167	1189	0.97

Sequence Information

Coding Sequence: ATGTACTCTTTTGTTACAGAAATCAAAACAGAGGAGGTCATCAGTGAAGCTAAAATCGAGGCCGACGAAGAAATGGACGGCGTTCAAATTGAAAAGCAAGAACTCAGAGTCACTAGGACGACGAGCATCGACAGTGACAACCGATCGGACAGGAGCGAGGAAGAAGATTTAAGAAGAGCGCGCAAACGAGCTGCGTCTACATCACCATCACCAATCCCGATGGACAAAAGGACAGCTAGATTCGAGTGCCCCAAATGCCGGCAGCGATTCGACTCGGTCAACGCTTTCGACATCCATCGATTCACTGCGCACAGTGACGACACCAAGACTGGCTTCGACGATCTAACCTTCGTGGATTTCTCCAGTAAAAAGTTCCCTGAGATTGCTCGAGGAGTCTGTGAGAGAAATCCTCACGTGTCCGTGACAGAACAGCGTTACAGATGCGAAATGTGCTGCAGAGACTTCCCTTGCGGACAAGCTCTTGACATTCACAGGAAATCGTGCCCCTCTACCACTCGGATCCCCAGTCCCGAAAGAGATCGCAGGGAGGATTTCTTCGCTAAATTAGACCTTAGAAACAGGTCCTTCGGTATTCCTGGCACGTTGACTCCGCCTATGGAAAGATTTACCCCCAAGTTCGATGATAGCCATCTAACCAATGGTATAAGACACATCGATGCCGCTCGCGACTTGGCAGATATTCAATCGATATTAAACGTCACATCAGCTGGCGGCCTTTTAGAGAGGCTCACTGGCACAAGAGTGGCATTAGAAAGTTCAGTTCTAACCCCTCCTGACACAATTATCAAGGACAGAGATCAAGAAGAAACCCAAGACAATTTCGCAGCTGAGTTTAGACGTATGAAGCTGCGTGGAGAATTCCCCTGTAGGTTATGCCCAGCCAAGTTCCCCAACCTAAGAGCTTTGAAGGGACACAATAGAGTACACTTGAGCGGAACAGGCCCAGGACCTTATCAGTGCAACATGTGCCCTCATGCTTCTTTAGATAAGGCAGCGTTAGTACGTCACATGCGCACCCATAACGGGGACAGGCCGTACGAATGCGCCGTGTGCAACTACGCTTTTACAACCAAAGCGAATTGTGAGCGTCACTTAAGGAACAGACATGCCAAAGTCACGAGAGAAGATGTCAAACGTTCCATAATTTACCATCCTTCTGAAGATCCTAATAATGATGAAGTGAACTCAAAACTTGCGAGGGATGAGGTGAAAAGATCGCTGGCCTTCCACACTCCTGAGATGGACAGACGAAATGAAAATACCGGACGCGATACACCGGTAACGCACTTTGCCCCTAGCTTTATAACAGACAGACACCCTGTCGCTAATTTAACGGCCAAATCATTACCAATGCCTGAATCACCTTTGCCTTTACCTATGCCAAGAGACGTAGAGCAGCCCCCACCTCGAATTAAAGTGAAGGGTATTGGCCAGTTGACGCAAATCCCCGAGTTCAGGCCACCAGAAATCTCTTACAAGCCCAATGACATCCAACACGACTCGTATGATGAAGAAGCTCCAGTAGACTTGAGCACAAGTGACAATAATAGTTGTGATGTACTTGATCTCAGTAAGAAGAAACGTGACACCGATTCTGAGGAACCTAAAGCCCCACCGCGTCCAACCTTCGAACCTGACCCAGCGAGCGTCGCCGCTTCAGCCTTCGAAAAGACAAGATTCCTCTTAGCTTCACAAAGACTTTTCGAAAACTCCCTTCCGAAAATTGATCCAGCTTACTATGCCACCCAGCTATCACAACTGTACGCTGGCACTGTTCCTGGGATCCCTGGTTTACCTTTGCCACCGTCCTTTCCTATCGCCCCATACTTACTTCAACCCTCGTTTTTTCCTCACCCAACTGACTCCCAGGAACTTGCCGAAATAAAACAGCACATACAGAAAGAAATCATTCGGGGATTGAGCATGTCTGGTGGCAGACTTGTGCCTAACGATCAGGAAAGTCAACCTAAACTTGAGCCTGAGGAAGAAGAGCAAAAACCACCGCCAACCATCTCTCCGATACCTTCGCCACACCCTGAATCTCCACGCCCATCAATGAATAACACTCTAATTCCTCAAACGGACTCTGTGAAGATGGTTATAAAAAACGGCGTTTTGATGCCCAAGCAAAAGCAAAGGAGATACAGAACTGAAAGACCGTTCTCTTGCTCCCAATGTTCTGCACGGTTTACTCTCCGATCCAACATGGAACGCCATGTAAAGCAACAGCATCCTCAGCACTGGAGTGTCAGAAGACCAGCTCCTAGGGCCCCACCACCGTACCCAACGCCTGATTCACTGGCTGACCGCATGAAGTTCGCCCTTTTGGCTCGACATCTTGAAAGGCCACTGCAACAATCTGAGCGATCGCCAGTACGTCGGGACTCTGATGAAGTAGCCGACAATGAGGAAGATGAAGAAGATGCCTTAGTGATAGATGAAGAACCTGATCAAGAAATGAAGCCGGAAGATCATACAGCAGCGCGCCGTGCGGCGGCTGAAATACTAATGGCTACGTGCCAACAGGAAATGACAAAAGATTTCGACCTTAAAATCGCTGGAAACTTGATTAATAAACCTGTACCAATCACCAATGATAAGACTGAGTCTGGAACTAATTCTGTGTCACCGACGCAAGAGCCACTGCCTGTACCCGTGGTGCCTACTCGCAGCGATGAGGAAGAAGATGAAGAAGGTCTGGTTGCCTCTACTAGCGAGGGGAACAACTCTGGGAGTGATGAAAATAAATCGGAAACAGACACGGCTCTACCACCCAAGAAGAAGTCAGCCTACAGTCTAGCACCGAACCGCGTATCATGTCCATACTGCCACCGAAAGTTCCCATGGTCTTCATCCCTTCGTCGCCACGTCCTCACGCACACCGGCCAAAAGCCATTCAAGTGTCCACACTGCCCACTCCTCTTCACCACCAAGTCCAACTGCGACCGTCATCTTTTGAGGAAGCATGGAGGTTCCGCCAGAGCTATTCTGGCTGAGCCAATCCCTGATACTGTGTCCCAACCGCAGCCGGTGAACGACACCAGAGCAGTTCCAGAAAGACCGTTCAAGTGTGTTACCTGCCCCACAAGTACCTTCTCTTCTCTTGAAACCTTGAAGAAACACATGTCTTCAAGACATGGAACCGACTCTCAACCTTGCTCCCCTAACCCTGAAATAGTGGAAGAAACGAATGAAGGTGGTCTAGTCTTCAAGTGCCATCTTTGCGAGGCGTCTTTCGGAGAAAGGAGTGGTGCGCTATCTCACTTGGCGACGGGACATACGACTGAATATGAGCAGCTGGTCAGCAAAGGAGCCTTGGATGCTGCCAGCGACCGGAGTGAAAgcgctgatgatgatgagaggGGGAAGTTTCCTGACCATGCTAATAGAAAGGTGGTTTGCGCATTCTGTGTGCGTCGTTTTTGGTCAGCGGAAGACCTCCGTCGCCATATGAGAACTCATTCTGGGGAGAGGCCGTTCGCCTGCGACCTCTGCCGACGACGCTTCACCCTGAAGCATAGCATGCTGCGACATCGCAAGAAGCATAGGGAAGAAATCACTGATGATGAGGAGGCTTCTCCGCCTAACACACCGCTGGAAGAAACTGTGGCTAATGGATACCGCTATCAAGATGACGATGGTTCAGGCAGCGAAATCCCGAGCAACGTCAACAACAACAACTCTCCTCCCTCCGCCCCATACGAGAAGAAGCTCAAACTGGACATGACATCGCGCAAATACTCCTCAGAGGCCGAAAATGACCCGGAAAACAGCGACCTCATCGGTAAACTGCTCGGAATTCCCGACAAAACTATCAACAAACTACTCTCCTCCGCAGATGAAGCTGCCAAAATCCTTGGCGTGAATAAATGA
Protein Sequence: MYSFVTEIKTEEVISEAKIEADEEMDGVQIEKQELRVTRTTSIDSDNRSDRSEEEDLRRARKRAASTSPSPIPMDKRTARFECPKCRQRFDSVNAFDIHRFTAHSDDTKTGFDDLTFVDFSSKKFPEIARGVCERNPHVSVTEQRYRCEMCCRDFPCGQALDIHRKSCPSTTRIPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDSHLTNGIRHIDAARDLADIQSILNVTSAGGLLERLTGTRVALESSVLTPPDTIIKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEMDRRNENTGRDTPVTHFAPSFITDRHPVANLTAKSLPMPESPLPLPMPRDVEQPPPRIKVKGIGQLTQIPEFRPPEISYKPNDIQHDSYDEEAPVDLSTSDNNSCDVLDLSKKKRDTDSEEPKAPPRPTFEPDPASVAASAFEKTRFLLASQRLFENSLPKIDPAYYATQLSQLYAGTVPGIPGLPLPPSFPIAPYLLQPSFFPHPTDSQELAEIKQHIQKEIIRGLSMSGGRLVPNDQESQPKLEPEEEEQKPPPTISPIPSPHPESPRPSMNNTLIPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDSLADRMKFALLARHLERPLQQSERSPVRRDSDEVADNEEDEEDALVIDEEPDQEMKPEDHTAARRAAAEILMATCQQEMTKDFDLKIAGNLINKPVPITNDKTESGTNSVSPTQEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDTALPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVSQPQPVNDTRAVPERPFKCVTCPTSTFSSLETLKKHMSSRHGTDSQPCSPNPEIVEETNEGGLVFKCHLCEASFGERSGALSHLATGHTTEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEASPPNTPLEETVANGYRYQDDDGSGSEIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEAENDPENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01533483;
80% Identity: -