Basic Information

Insect: Craniophora ligustri
Gene Symbol: RREB1
Assembly: GCA_905163465.1
Location: LR990977.1:6333510-6348192[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.065 6.1 8.2 0.5 1 23 94 117 94 117 0.94

2 12 5.3 5e+02 2.2 1.2 1 21 159 179 159 180 0.85

3 12 0.02 1.8 9.8 0.1 1 23 307 329 307 329 0.97

4 12 0.001 0.099 13.8 0.4 1 23 338 360 338 360 0.99

5 12 0.00065 0.061 14.5 2.0 1 23 366 389 366 389 0.97

6 12 0.0026 0.25 12.6 1.6 1 23 741 764 741 764 0.96

7 12 0.00022 0.021 16.0 1.3 2 23 959 980 958 980 0.97

8 12 0.098 9.2 7.6 6.5 1 23 986 1009 986 1009 0.97

9 12 0.62 58 5.1 1.5 1 23 1042 1066 1042 1066 0.90

10 12 0.027 2.5 9.4 0.2 1 23 1090 1113 1090 1113 0.95

11 12 0.0016 0.15 13.3 0.2 2 23 1153 1174 1152 1174 0.96

12 12 0.013 1.2 10.4 5.5 1 23 1180 1202 1180 1202 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.065	6.1	8.2	0.5	1	23	94	117	94	117	0.94
2	12	5.3	5e+02	2.2	1.2	1	21	159	179	159	180	0.85
3	12	0.02	1.8	9.8	0.1	1	23	307	329	307	329	0.97
4	12	0.001	0.099	13.8	0.4	1	23	338	360	338	360	0.99
5	12	0.00065	0.061	14.5	2.0	1	23	366	389	366	389	0.97
6	12	0.0026	0.25	12.6	1.6	1	23	741	764	741	764	0.96
7	12	0.00022	0.021	16.0	1.3	2	23	959	980	958	980	0.97
8	12	0.098	9.2	7.6	6.5	1	23	986	1009	986	1009	0.97
9	12	0.62	58	5.1	1.5	1	23	1042	1066	1042	1066	0.90
10	12	0.027	2.5	9.4	0.2	1	23	1090	1113	1090	1113	0.95
11	12	0.0016	0.15	13.3	0.2	2	23	1153	1174	1152	1174	0.96
12	12	0.013	1.2	10.4	5.5	1	23	1180	1202	1180	1202	0.98

Sequence Information

Coding Sequence: ATGCAGGGAGCTGCCAGCGCGCCCGCGCCTCCCGCGGCCGAACCGCCATCTTCACAACAAATCAAAACAGAGGAGGTCATCAGTGAAGCTAAAATCGAGGCCGACGAAGAAATGGACGGCGTTCAAATTGAAAAGCAAGAACTCAGAGTCACTAGGACGACGAGCATTGACAGTGACAACCGTTCCGATAGGAGCGAGGAGGAAGACCTGAGGAGAGCACGAAAACGGGCTGCGTCCACGTCGCCATCTCCGATCCCTATGGACAAAAGAACAGCTAGATTCGAGTGCCCCAAATGCCGGCAGCGATTCGACTCGGTCAACGCTTTCGACATCCATCGATTCACTGCGCACAGTGACGACACCAAAACTGGCTTCGACGATCTAACCTTCGTCGATTTCTCCAGCAAAAAGTTTCCTGAAATTGCCCGCGGGGTCTGCGAGAGGAACCCTCACGTTTCAGTGACTGAACAGCGTTATAGATGCGACATGTGCTACAGAGACTTCCCTTGCAGACAAGCTCTGGACGTGCATAGAAAATCGTGCTCCTCTAACACTCGGATTCCCACTCCTGAGAGAGACCGCCGGGAGGATTTCTTCGCTAAACTGGACCTTAGGAACAGGTCTTTCGGTATACCCGGAACGTTGACTCCCCCTATGGAAAGATTCACGCCTAAATTCGAAGATAATCATCTCACTAATGGCATAAGACCCATCGATGCCCCTCGAGACTTGGCAGATATTCAATCGATATTAAACATCACGTCAACCGGCGGCCTTTTGGAAAGACTCACTGGCACAAGGGTTCCTTTAGAAAGTTCGGTGTTAACACCACCTGACACTATTATGAAGGACAGAGACCAAGAAGAAACACAAGACAATTTCGCAGCAGAGTTCAGACGAATGAAGCTACGTGGGGAATTCCCTTGTAGATTATGCCCAGCCAAGTTTCCCAACTTAAGAGCGTTAAAGGGACACAATAGAGTTCACTTGAGTGGTACGGGCCCAGGACCTTATCAATGCAACATGTGCCCTCATGCTTCCCTAGATAAGGCGGCGTTAGTGCGTCATATGCGGACTCACAACGGGGACAGGCCTTACGAATGTGCCGTATGCAATTACGCCTTTACTACCAAAGCCAACTGTGAACGGCACCTAAGAAACAGACATGCCAAAGTAACGAGAGAAGATGTCAAACGATCAATAATTTATCATCCTTCTGAAGATCCTAACAACGATGAAGTAAATTCGAAACTCGCTAGAGATGAGGTGAAAAGGTCGTTGGCTTTTCACACTCCTGACATCGACAGGCGAAATGAGAGTTCGGGTCGTGATACCCCGCTAACCCACTTCACTCCAAGCTTTATTACTGACAGACATCCTGTTACGAATCTAACATCAAAACCATTACCATTGCCTGATTCGCCCTTGCCTTTACCTATGCCAAGAGAAACGGAGCAACCCCCACCTCGAATCAAAGTAAAGGGTATTGGTCAGCTAACGCAAATACCCGAATTCAGACCACCGGAAATCAGTTACAAACCTAATGATATCCAACAGGAGCCATATGATGAAGAAGCTCCAGTAGACTTAAGCACAAGTGACAATAACAGTTGTGATGTCCTTGATCTCAGTAAGAAGAAACGTGACAGTGATTCTGAAAAACCAAAATCCCCACCACGCCCATCATTTGAACCTGATCCAGCTAGTGTAGCGGCGTCAGCGTTCGAAAAGACAAGATTTCTCTTAGCTTCGCAGAGACTGTTTGAAAACTCCCTTCCAAAAATTGATCCAGCCTATTATGCCACGCAGCTTTCACAGCTGTATGCTGGTTCCGTCCCTGGAATCCCTGGTTTACCTTTGCCACCGTCCTTTCCTATCGCCCCATATTTACTTCAACCCACGTTTTTTCCTCACCCAACTGATTCACAAGAACTTGCAGAAATAAAACAGCACATACAAAAAGAAATCATCCGAGGTTTGAGCATGTCTGGTGGCAGACTCGTCCCTAACGATCAAGAGAGCCAGCCTAAACTTGAGCCTGAGGAAGAGGAACAAAAACTACCGACAACTATCTCGCCGACACCTTCGCCACACCCAGAATCTCCACGCCCACCAATTAATAACACTCTCGTTCCACAAACCGACTCTGTAAAGATGGTCATAAAAAACGGCGTTTTGATGCCCAAGCAAAAACAAAGGAGATACAGAACTGAGAGACCGTTTTCTTGCTCCCAATGTTCAGCGCGATTCACTCTGCGGTCTAATATGGAACGCCATGTTAAGCAACAACATCCGCAGCACTGGAGTGTAAGAAGACCTGCTCCGCGGGCCCCCCCACCGTACCCAACACAAGATTCACTATCTGACCGTATGAAGTTCGCTTTATTAGCTCGCCATCTTGAAAGACCATTACAACAATCTGAACGATCGCCTGTGCGAAGAGATTCTGATGAAGTAGCTGACAATGAGGAAGATGAAGAAGATACCTTAGTAATCGATGAGGAGCCTGACCAGGAAATTAAGTCGGAAGATCATACTGCTGCGCGCCGTGCAGCCGCTGAAATCCTAATGGCTACATGCCAACAGGAAATGAGCAAGGATTTTGACCTTAAAATTGCTGGAAACTTGATCAATAAGCCGGTACCGATAACCAATGATAGAACTGAGTCTGGAATCGATTCCGTCTCGCCGATACAAGAGCCACTGCCAGTACCAGTGGTTCCTACTCGCAGTGATGAAGAAGAAGATGAGGAAGGACTGGTGGCCTCCACCAGCGAAGGGAACAACTCCGGAAGCGATGAAAATAAATCTGAAACCGATACAGCTATTCCACCTAAGAAGAAGTCTGCCTACAGCCTGGCACCGAATCGAGTATCGTGTCCGTATTGCCACCGGAAATTTCCTTGGTCATCATCCCTTCGCCGCCACGTGCTCACACACACTGGCCAAAAACCATTTAAGTGCCCCCACTGCACACTACTTTTCACCACCAAGTCCAACTGCGACCGCCACTTGTTGAGGAAACACGGAGGGTCTGCTAGAGCCATTCTGGCTGAGCCGATCCCCGACACCGTGTCTCCACCGCAGCCAGTGAACGATATGAGAGCAGTCCCAGAACGTCCTTTCAAATGTGCCTCTTGTCCAACAAGTACCTTTTCGTCCCTCGAAACCCTGAAAAAGCATACATCTTCAAGACATGGCACCGATTCTCAGCCAGGGTCGCCAAACACGGACATTGTGGAGGAAACGAATGACGGTGGTCTAGTCTTCAAATGCCATCTCTGCGAGGCGTCTTTTGGAGACAGAAGTGGAGCTCTATCTCATTTGGCCTCGGGACATTCCACTGAGTATGACCAGCTCGTCAGTAAGGGAGCTTTGGACGCTGCCAGTGACCGGAGTGAAAGCGCCGATGATGACGAGAGAGGGAAGTTTCCTGACCACGCTAATAGAAAGGTGGTATGCGCTTTCTGCGTTCGTCGTTTCTGGTCAGCCGAGGACTTGCGTCGCCACATGAGGACTCATTCGGGCGAGAGGCCGTTCGTGTGTGACCTTTGCCGGCGACGGTTCACTCTGAAGCACAGTATGCTCAGACATCGTAAGAAGCACCGGGAAGAAATAACTGATGACGAGGAGGCTTCGCCCCCCAATACCCCTCTAGAAGATACCATAGCTAATGGTTACCGCTATCAAGATGATGACGGATCCGGCAATGAAATTCCGAGCAACGTCAACAACAACAACTCCCCACCCTCTGCCCCCTATGAGAAGAAGCTCAAACTGGACATGACATCGCGCAAGTACTCGTCAGAGGCTGAAAACGACCCAGAAAACAGCGACCTCATTGGCAAACTTCTCGGGATCCCCGATAAAACCATAAACAAACTACTCTCTTCCGCAGACGAGGCTGCAAAAATCCTTGGCGTGAATAAATGA
Protein Sequence: MQGAASAPAPPAAEPPSSQQIKTEEVISEAKIEADEEMDGVQIEKQELRVTRTTSIDSDNRSDRSEEEDLRRARKRAASTSPSPIPMDKRTARFECPKCRQRFDSVNAFDIHRFTAHSDDTKTGFDDLTFVDFSSKKFPEIARGVCERNPHVSVTEQRYRCDMCYRDFPCRQALDVHRKSCSSNTRIPTPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFEDNHLTNGIRPIDAPRDLADIQSILNITSTGGLLERLTGTRVPLESSVLTPPDTIMKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDIDRRNESSGRDTPLTHFTPSFITDRHPVTNLTSKPLPLPDSPLPLPMPRETEQPPPRIKVKGIGQLTQIPEFRPPEISYKPNDIQQEPYDEEAPVDLSTSDNNSCDVLDLSKKKRDSDSEKPKSPPRPSFEPDPASVAASAFEKTRFLLASQRLFENSLPKIDPAYYATQLSQLYAGSVPGIPGLPLPPSFPIAPYLLQPTFFPHPTDSQELAEIKQHIQKEIIRGLSMSGGRLVPNDQESQPKLEPEEEEQKLPTTISPTPSPHPESPRPPINNTLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTQDSLSDRMKFALLARHLERPLQQSERSPVRRDSDEVADNEEDEEDTLVIDEEPDQEIKSEDHTAARRAAAEILMATCQQEMSKDFDLKIAGNLINKPVPITNDRTESGIDSVSPIQEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDTAIPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVSPPQPVNDMRAVPERPFKCASCPTSTFSSLETLKKHTSSRHGTDSQPGSPNTDIVEETNDGGLVFKCHLCEASFGDRSGALSHLASGHSTEYDQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFVCDLCRRRFTLKHSMLRHRKKHREEITDDEEASPPNTPLEDTIANGYRYQDDDGSGNEIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEAENDPENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01533483;
80% Identity: -