Wpum010510.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wiebesia pumilae
Gene Symbol
-
Assembly
GCA_018907045.1
Location
JACCHZ010000138.1:8403467-8406113[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.3e-05 0.0034 19.2 2.0 1 23 306 328 306 328 0.98
2 12 0.0001 0.026 16.4 5.1 1 23 332 354 332 354 0.98
3 12 0.00036 0.092 14.7 2.7 1 23 359 381 359 381 0.96
4 12 3.9e-05 0.0099 17.7 2.0 1 23 433 455 433 455 0.97
5 12 0.00065 0.17 13.9 1.3 1 23 460 482 460 482 0.97
6 12 6.8e-05 0.017 17.0 1.5 1 23 531 553 531 553 0.98
7 12 0.00046 0.12 14.4 1.8 3 23 562 582 561 582 0.98
8 12 8.8e-07 0.00022 22.9 2.1 1 23 593 615 593 615 0.96
9 12 0.0002 0.051 15.5 1.6 1 23 621 643 621 643 0.97
10 12 0.00014 0.036 16.0 0.7 1 23 649 671 649 671 0.98
11 12 4.2e-06 0.0011 20.8 2.0 1 23 677 699 677 699 0.96
12 12 7.5e-05 0.019 16.8 0.3 1 22 705 726 705 726 0.96

Sequence Information

Coding Sequence
ATGGCAATAAATAATAGTTATTTCGTCATGCCGATGAACATGGATAGAGTTTGTCGTATTTGTTTACAAGAGAATACAAATTTATCACCTATTTTCTGCAATGGGCAGGATGTAGGTAATCTTTCGGATTTACCACAGAAAATTCAAGTCTGTGGAGCTGTTGAATGTCACGAACAGGATGGTTTGCCTGCTCTAATATGCGATGTTTGTATATATAAAGCAAGTGTTGCACATGAATTCAGACAATTATGCCAACACTCGGATACTCGATTGCGACTTTATTACAATAAACCTGCTAAATACAATGCTATTGACTCTGGTACGCAGACTGATCTACAAACTCAAGTTCTTTTAACAAAAACTGCTGAAGAATTACAAAATCATTATTTTGTAAAACAAGAAGTAATGAATAGTCAGCAATTTCATAATACAATATCCAACGACGATTATAATCCAGAAACACAGAATAATTCAGTTGTAACAACGATCGAATCAACTATGCCTTCGGTTGATGTGTCTATATCAGTTGACGAAGAAAAACTTTTTAACTGTCATCTTGGTTTTGAGGAACAGCCTAAGGATGTTAATAAAAATTCTGAAGTCGTGCCCTGCGATACACAGTCAGTAACTTGTACACAAGAACTAATTCCGGTTTCTACAAATTTAATCGATAGCGTTTGTAATATAGAAACAGATATCAATACATCAGAAAATGGTGTAAAGAATGACGTTAGTTATTATACCTATATGACAAAAGATGATCATGAAACTATTGGTGAAGATGAAAATAGCTTGGCAAAGCGAACGTCTTCTAGAAAGTTAAAAAGTATGCAGTGTAATACTTTTGATGACGAAGAAATTGAACATGATTATTTTGAACCGGATAGTGACAGCCAAAATCAGGAAGACACAAAATTCAAATGTGAAATATGTTTGAAATCCTACAGTACGCAAAAAGGTTTCAAAAAACACCAATTAATCCATGAAAAACAACATAAATGCGATATTTGTTCAAAAACCTTTTGTAAGATAGAAAATCTAGAAAAACACAAAAATATTCATGCAGCAAAACCACACGCTTGCCAATTCTGTAACGCCAGCTTTTCCAAATCTCAAAGCCTTGTTAAACATTTAAAGTCTCACACTGAAAAAGTTAATAATATCATCAAGCAAATAAGCTCGGATGACCAAAAAGAAGAAACAGTTATGAAAAAAAATTCCAAAAGCGAAGATGACACGGAAGATGAAAGTGGAAATGGAAATGAACCAGATGGTTTTGAGAATGCACCCGAAATTTTCAAATGTGAAGTATGCGGCCAGTATTGTTCAACGTTAAAAAATTTAAAACGTCATGCTCTTATTCATGGAGAAAGAAAATATTCTTGTACCGTTTGTAAAAAGTGGTTCTTCCGACCAGATACGTTAAAGAAACACGCAGAAAGACACGGGCATGGATTACTCGATAATCTTTCCGATGATAATAAATTGTACGATTCCGACGACGATCCATTTCCACATGCCACAAACAGTAATATGACGGAGAATGATAATGCAAAGAAAGATGAAAGCGAGGAGGAAGGTAATGGTGAATATAAATGTCAACATTGCGACAAGGTAATGGCTACAAAGAAGGGCCTGCGAAGACACGTTGCTATGCATAAACCTAAACCAGAACCAGCAATCTGCGAAATATGTAAAAAAGTTTGTGCCAGTCGAGCTCGACTCACTCTCCATCAAAAAACTCATAACAAACCTAAAGAAAAGGTACCACGAGAGTATCTTTGTCATATTTGTAGCAAGGTTTATCCCAGTAATTCTTCGCTTACGTACCACATGAGAACTCATACCGGAGTTAAGCCTCACGTGTGCAAAACCTGTAACAGTGGCTTTACCACAACTACAAGCTTAGCTAACCACATTCGCATTCACACTGGTGATAAGCCTTTCGTTTGTCACGTATGCAGCGCAGCCTTTGCAGTTAGTTCTGCCTTCAGAAGGCACTTGACTCGACATACAGGTGAAGCCAATTATCTCTGTAAGACGTGCGGAAAAGCCTTTAAACGGCTTAGTACATTAAAAGAACACACTTATACGCATTCCGGAGAGAAACCTTATGTCTGTAAGACTTGTGGAGCAGCATATAGTCACAGTGGCAGTCTCTTTGCTCATCAAAAGCGATGCAGAGTTCAGTATACCGAGATGGTGGTAGAAGATCATCATCATACGGTAGCTCATCATATCCATGTTAATAATGTGCAATCCGCGGTGCGGTCACTTGCTGTGATAGGTCAGATGTTTTGA
Protein Sequence
MAINNSYFVMPMNMDRVCRICLQENTNLSPIFCNGQDVGNLSDLPQKIQVCGAVECHEQDGLPALICDVCIYKASVAHEFRQLCQHSDTRLRLYYNKPAKYNAIDSGTQTDLQTQVLLTKTAEELQNHYFVKQEVMNSQQFHNTISNDDYNPETQNNSVVTTIESTMPSVDVSISVDEEKLFNCHLGFEEQPKDVNKNSEVVPCDTQSVTCTQELIPVSTNLIDSVCNIETDINTSENGVKNDVSYYTYMTKDDHETIGEDENSLAKRTSSRKLKSMQCNTFDDEEIEHDYFEPDSDSQNQEDTKFKCEICLKSYSTQKGFKKHQLIHEKQHKCDICSKTFCKIENLEKHKNIHAAKPHACQFCNASFSKSQSLVKHLKSHTEKVNNIIKQISSDDQKEETVMKKNSKSEDDTEDESGNGNEPDGFENAPEIFKCEVCGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLSDDNKLYDSDDDPFPHATNSNMTENDNAKKDESEEEGNGEYKCQHCDKVMATKKGLRRHVAMHKPKPEPAICEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEMVVEDHHHTVAHHIHVNNVQSAVRSLAVIGQMF