Pnir063966.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010003451.1:11869-14734[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00018 0.057 15.7 2.6 1 23 306 328 306 328 0.98 2 12 0.00032 0.1 14.9 6.0 1 23 332 354 332 354 0.98 3 12 0.00072 0.23 13.8 4.0 1 23 359 381 359 381 0.96 4 12 4.1e-05 0.013 17.7 2.0 1 23 433 455 433 455 0.97 5 12 0.00068 0.22 13.9 1.3 1 23 460 482 460 482 0.97 6 12 7.1e-05 0.023 17.0 1.5 1 23 531 553 531 553 0.98 7 12 0.00036 0.11 14.8 1.8 2 23 561 582 561 582 0.97 8 12 9.2e-07 0.00029 22.9 2.1 1 23 593 615 593 615 0.96 9 12 0.00021 0.067 15.5 1.6 1 23 621 643 621 643 0.97 10 12 0.00015 0.047 16.0 0.7 1 23 649 671 649 671 0.98 11 12 4.4e-06 0.0014 20.8 2.0 1 23 677 699 677 699 0.96 12 12 7.9e-05 0.025 16.8 0.3 1 22 705 726 705 726 0.96
Sequence Information
- Coding Sequence
- ATggcaataaataatagttatttcgTCATGCCGATGAATATGGATAGAGTTTGTCGTATATGTTTACAAGAGACTACGAATTTATCACCTATTTTCTGCAATGGGCAGGACATAGGTAATCTTTCAGATTTACCACAGAAGATTCAAGTCTGTGGAGCTGTTGAATGTCACGAACACGATGGTTTGCCTGCTTTGATCTGCgatgtttgtatatataaagCAAGCGTTGCCCACGAGTTCAGACAATTATGCCAACACTCGGATACTAGATTGCGGCTTTATTACAATAAACCTGCTAAATACAatgctattgaTTCCGGTACACAGACTGATTTACAAGCTCAAGTTCTTTTAACAAAAACTGCCGAAgaattacaaaatcattattttgtaaaacaagaaGTAATGAATAATCAACaatttcataatacattttcaaatgaaGAATATAATCCCGAAACACAGACCAATTCAGTCGTTACGACAATTGAATCGACTATGCCTCCAGTTGATGTAAGTATATCAGTCGAGGaagaaaaacttttcaattGTCATCTTGGTTTTGAAGAACAATCTAAGGAAGTTGACAAAAATTCCGAAGTTGTACCATGTGATTCACAGTCAGTAACGTGTACACAAGAATTAATTCCAGTTTCTACAAACTTAATCGACAGTGTTTGTAATATAGAAACAGATATAAATACATcagaaaatgaagtaaaaaatgatgttaGTTACTATACTTATATGACAAAAGATGATCACGAACCCATTGGTGAAGAAGaaaatagtttagaaaaaaGAACGTCTTCTAGAAAGTTAAAAAGTATACAGAATAATACTTTTGATAGTGAGCAAATGGAACGTGATTATTTTGAACCGGACAGCGATAGCCAAAATCCAGAAGAAATCAAATTCAAATGCGAAACATGTATGAAAACTTACAGCACACAAAAAGGTTTGAAAAAACACCAATTACTACACGAAAAGCAACACAAATGCGAGACTTGTTCGAAAATGTTTTGCAAGCTAGAAAATTTAGAGAAGCACAAAAATATTCACACAGCGAAACCTCATGCTTGCCAATTATGTCACGCCAGTTTTTCAAAATCTCAAAGTCTCGTTAAACATTTAAAGTCTCACACCGAAAAAGTCAATAACATCATAAAACAAATAAGTTCCGATGATCACAAAGACGAAgcgataataaaaacaaattttaaaagcgaAGACGACACGGAAGACGAAAGCGGGAATGGCAACGAACTCGATGCTTTTGAAAATGCcccagaaatttttaaatgcgaaGTATGCGGTCAATATTGTTCGacgctaaaaaatttaaaacgtcaCGCTCTGATTCACGGAGAAAGGAAATATTCTTGTACCGTTTGTAAAAAGTGGTTCTTCAGACCGGACACGTTAAAAAAGCACGCGGAGAGGCACGGGCACGGATTACTAGATAATCTCGCCGACAACAATAAGCTGTACGATTCCGACGACGATCCGTTTCCGCATACCGCGAACAGCAACGCGACGGAAAACGACAGCGCGAAGAAAGACGAAAGCGAGGAAGAAGGCAACGGAGAGTACAAGTGCCAACACTGCGATAAAGTGATGGCCACGAAGAAGGGATTGCGAAGACACGTAGCTATGCATAAGCCGAAACCAGAACCAGCGGTTTGCGAGATATGTAAAAAAGTCTGCGCCAGTCGAGCTCGGCTCACTCTTCATCAGAAAACTCACAACAAACCTAAGGAAAAAGTACCGCGAGAGTACCTTTGTCATATCTGCAGCAAAGTGTATCCGAGTAATTCTTCGCTCACGTACCACATGAGAACTCACACAGGAGTCAAACCTCACGTCTGCAAAACCTGCAACAGTGGCTTTACCACGACCACGAGTTTGGCTAATCACATTCGAATTCACACCGGTGATAAGCCCTTCGTTTGTCACGTATGCAGTGCAGCCTTTGCAGTCAGTTCTGCCTTCAGAAGACACTTGACTCGACATACGGGTGAAGCCAATTATCTTTGCAAAACGTGCGGAAAAGCCTTTAAACGGCTTAGTACGTTAAAAGAACACACTTATACGCATTCCGGGGAGAAGCCTTACGTCTGTAAGACTTGTGGAGCAGCATATAGTCATAGTGGCAGTCTCTTTGCTCATCAAAAGCGATGCAGGGTTCAGTACACTGAGATGGTGGTAGAGGATCATCACCACACGGTAGCTCATCATATCCATGTTAATAATGTGCAATCCGCGGTGCGGTCGCTTGCTGTGATAGGTCAGATGTTTTGA
- Protein Sequence
- MAINNSYFVMPMNMDRVCRICLQETTNLSPIFCNGQDIGNLSDLPQKIQVCGAVECHEHDGLPALICDVCIYKASVAHEFRQLCQHSDTRLRLYYNKPAKYNAIDSGTQTDLQAQVLLTKTAEELQNHYFVKQEVMNNQQFHNTFSNEEYNPETQTNSVVTTIESTMPPVDVSISVEEEKLFNCHLGFEEQSKEVDKNSEVVPCDSQSVTCTQELIPVSTNLIDSVCNIETDINTSENEVKNDVSYYTYMTKDDHEPIGEEENSLEKRTSSRKLKSIQNNTFDSEQMERDYFEPDSDSQNPEEIKFKCETCMKTYSTQKGLKKHQLLHEKQHKCETCSKMFCKLENLEKHKNIHTAKPHACQLCHASFSKSQSLVKHLKSHTEKVNNIIKQISSDDHKDEAIIKTNFKSEDDTEDESGNGNELDAFENAPEIFKCEVCGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLADNNKLYDSDDDPFPHTANSNATENDSAKKDESEEEGNGEYKCQHCDKVMATKKGLRRHVAMHKPKPEPAVCEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEMVVEDHHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524177;
- 90% Identity
- iTF_01524177;
- 80% Identity
- -