Basic Information

Insect: Ormyrus thymus
Gene Symbol: Prdm15
Assembly: GCA_035582935.1
Location: JAWWEM010000001.1:10420441-10422904[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00021 0.028 15.8 3.9 1 23 304 326 304 326 0.98

2 12 3.5e-05 0.0047 18.2 3.1 1 23 330 352 330 352 0.96

3 12 0.00014 0.019 16.3 1.3 1 23 357 379 357 379 0.96

4 12 0.00026 0.034 15.5 4.1 1 23 431 453 431 453 0.97

5 12 0.00038 0.051 15.0 1.2 1 23 458 480 458 480 0.97

6 12 8.8e-05 0.012 17.0 1.5 1 23 529 551 529 551 0.98

7 12 0.00059 0.079 14.4 1.8 3 23 560 580 559 580 0.98

8 12 1.1e-06 0.00015 22.9 2.1 1 23 591 613 591 613 0.96

9 12 3.6e-05 0.0048 18.2 1.3 1 23 619 641 619 641 0.98

10 12 0.00013 0.018 16.4 0.6 1 23 647 669 647 669 0.98

11 12 2.1e-05 0.0029 18.9 1.9 1 23 675 697 675 697 0.94

12 12 9.7e-05 0.013 16.8 0.3 1 22 703 724 703 724 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00021	0.028	15.8	3.9	1	23	304	326	304	326	0.98
2	12	3.5e-05	0.0047	18.2	3.1	1	23	330	352	330	352	0.96
3	12	0.00014	0.019	16.3	1.3	1	23	357	379	357	379	0.96
4	12	0.00026	0.034	15.5	4.1	1	23	431	453	431	453	0.97
5	12	0.00038	0.051	15.0	1.2	1	23	458	480	458	480	0.97
6	12	8.8e-05	0.012	17.0	1.5	1	23	529	551	529	551	0.98
7	12	0.00059	0.079	14.4	1.8	3	23	560	580	559	580	0.98
8	12	1.1e-06	0.00015	22.9	2.1	1	23	591	613	591	613	0.96
9	12	3.6e-05	0.0048	18.2	1.3	1	23	619	641	619	641	0.98
10	12	0.00013	0.018	16.4	0.6	1	23	647	669	647	669	0.98
11	12	2.1e-05	0.0029	18.9	1.9	1	23	675	697	675	697	0.94
12	12	9.7e-05	0.013	16.8	0.3	1	22	703	724	703	724	0.96

Sequence Information

Coding Sequence: AtggcaataaataatagttattttgTTATGCCCATGAATATGGACAGGGTTTGTCGAATTTGTTTGCAAGAAAATACAAACTTATTGCCTATCTTTTCCAATGGCCAAGATGCAAGTACTATCACTGACTTACCACAGAAGATTCAAGTTTGTGGAGCTATTGAATGTCATGAACAAGATGGTTTGCCAGGACTGATTTGCGATGTTTGCATGTACAAAGCTAGCATTGCCCATGAATTTAGGCAGTTGTGTCAACATTCGGATACCCGATTGCGGCTTTATTATAACAAGCCTGCTAAATATAATGCTACTGATTCTGGTACGCAGACTGATGTACAAACACATgttcttttatcaaaaactGCAGAGCaaatacaaaatgaatattttgtaaaacaagAAGCAATTAACAGTCAACAATTCCACAATACAATAACAAGTGAAGAATACAATTCAGAACCTCAAACCAATTCAGTTGTTCAGGCAATTGAATCTACTATATCCACAGTGGATGTAAGCATGTCAGTTGAAGATGATAAACTTTTCAACTGTCATCTGGATTTTGAAGAACAGCCTAAATCTGTTATTGATAAAAGTTCAGAAGTTGTACCCTGTGATACTCAAGCAGTAGCATGTACACAAGAATTAATTCCAGTTTCTACAAATTTAATCGATAGTGTTTGTACAATAGAGGCAGATATAAATACTGTAGAAAACCAAGTGAAAAATGATGTCAGTTATTTTACTTATCTGACTAAAGAAGAAGTCCTGCAAGAAGAAAATGATAGTCTTCAGAAAGAAGCAATGACTGATAAGTCAAAAGTAATggaaaatacttttgtaaGTGAAGAAGTagaaaatagttattttgaTGCTGACAACAGTAGTCAGAGTCAAGAAGacggaaaatttaaatgtgaaacctgtttaaaattttataattctcaaAAGAGTCTGAAGAAACACCAATTAAGCCATGAAAATCAGTATAAATGTGAATTTTGTCcaaaaacattttgtaaattggAAAACTTAGAGAAGCATAAAGTTATTCATGCTGTGAAACCGCACGCTTGTCAATTATGTAACGCCAGTTTTTCCAAACCACAAAGTCTTGTCAAACACTTAAAATCTCATACTGAGAAAGTTAACGACATCATCAAGCAAATAAACACCGATGATCAGAAGGAGGAAaccgaagaaaagaaaaattcgaagAGCGATGAAGAATCAGAAGACGAGGCTGGCAACGGTAACGAAGTCGACGAGTTCGAAAATGCTccagaaattttcaaatgtgaTAAATGCGGTCAGTACTGCTCTACTTTAAAGAACCTAAAGCGACATTCCCTTATTCACGGGGAAAGAAAGTACTCCTGCACTGTAtgtaaaaaatggttttacCGGCCTGATACCCTAAAGAAACACGCTGAAAGACACGGCCATGGTTTACTAGACAATTTAGCTGATGATAATAAACTCTACGACTCCGATGAAGATCCATTCCCTAATGCAACTAGTAACAGTACAACCGAGAATGATAACGTTAAGAAGGAAGAAAGTGAGGAAGAAGGTACTGGCGATTATAAATGTCAGCATTGCGATAAAGTGATGGCAACGAAAAAGGGCCTTAGAAGGCACGTAGCCATGCATAAACCCAAGCCCGAACCTGCTATCTGCGAAATCTGCAAAAAGGTTTGCGCAAGTCGCGCGCGTCTGACCCTTCATCAGAAGACCCACAACAAACCCAAGGAAAAAGTCCCTCGTGAGTACCTCTGCCACATCTGTAGCAAAGTCTATCCGAGTAACTCCTCCCTTACCTACCACATGCGGACCCACACGGGCGTAAAGCCTCATGTCTGTAAGATTTGTAACAGTGGCttcacgacgacgacgagtcTGGCAAATCACATGCGCATCCACACGGGTGACAAACCCTACGTCTGCCATGTCTGCAGTGCAGCCTTCGCTGTCAGCTCTGCCTTCCGTCGTCACCTGACACGACACACCGGTGAGGCTAATTATCTGTGCAAAACCTGCGGCAAAGCGTTCAAGCGGCTCAGTACCCTCAAAGAGCACAACTACACGCACTCCGGCGAGAAGCCCTACGTCTGCAAGACCTGCGGTGCGGCGTACAGTCACAGCGGCAGCCTCTTCGCGCACCAGAAGCGCTGCAGGGTCCAGTACACCGAGATCGTTGACGATCACCACCACGCCGTCGCCCACCACATACACGTCAACAACGTGCAATCCGCCGTGCGTTCGCTCGCTGTGATAGGCCAGATGTTCTGA
Protein Sequence: MAINNSYFVMPMNMDRVCRICLQENTNLLPIFSNGQDASTITDLPQKIQVCGAIECHEQDGLPGLICDVCMYKASIAHEFRQLCQHSDTRLRLYYNKPAKYNATDSGTQTDVQTHVLLSKTAEQIQNEYFVKQEAINSQQFHNTITSEEYNSEPQTNSVVQAIESTISTVDVSMSVEDDKLFNCHLDFEEQPKSVIDKSSEVVPCDTQAVACTQELIPVSTNLIDSVCTIEADINTVENQVKNDVSYFTYLTKEEVLQEENDSLQKEAMTDKSKVMENTFVSEEVENSYFDADNSSQSQEDGKFKCETCLKFYNSQKSLKKHQLSHENQYKCEFCPKTFCKLENLEKHKVIHAVKPHACQLCNASFSKPQSLVKHLKSHTEKVNDIIKQINTDDQKEETEEKKNSKSDEESEDEAGNGNEVDEFENAPEIFKCDKCGQYCSTLKNLKRHSLIHGERKYSCTVCKKWFYRPDTLKKHAERHGHGLLDNLADDNKLYDSDEDPFPNATSNSTTENDNVKKEESEEEGTGDYKCQHCDKVMATKKGLRRHVAMHKPKPEPAICEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHMRIHTGDKPYVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHNYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEIVDDHHHAVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01524177;
90% Identity: iTF_01110371;
80% Identity: -