Olab023395.1
Basic Information
- Insect
- Ormyrus labotus
- Gene Symbol
- Prdm15
- Assembly
- GCA_035582975.1
- Location
- JAWWEO010021477.1:55496-57896[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.023 15.8 3.9 1 23 304 326 304 326 0.98 2 12 3.9e-05 0.0041 18.2 3.2 1 23 330 352 330 352 0.96 3 12 0.00026 0.027 15.6 2.0 1 23 357 379 357 379 0.96 4 12 0.00027 0.029 15.5 4.1 1 23 431 453 431 453 0.97 5 12 0.0004 0.042 15.0 1.2 1 23 458 480 458 480 0.97 6 12 9.4e-05 0.0099 17.0 1.5 1 23 529 551 529 551 0.98 7 12 0.00063 0.066 14.4 1.8 3 23 560 580 559 580 0.98 8 12 1.2e-06 0.00013 22.9 2.1 1 23 591 613 591 613 0.96 9 12 3.9e-05 0.0041 18.2 1.3 1 23 619 641 619 641 0.98 10 12 0.00014 0.015 16.4 0.6 1 23 647 669 647 669 0.98 11 12 2.3e-05 0.0024 18.9 1.9 1 23 675 697 675 697 0.94 12 12 0.0001 0.011 16.8 0.3 1 22 703 724 703 724 0.96
Sequence Information
- Coding Sequence
- AtggcaataaataatagttattttgtCATGCCCATGAATATGGACAGGGTTTGTCGAATTTGTTTGCAAGAAAATGCAAACTTATTACCTATCTTTTCCAATGGCCAAGATGCAAGCACTATCACTGACTTACCACAGAAGATTCAAGTTTGTGGAGCAATTGAATGTCATGAACAGGATGGCTTGCCTGGACTGATTTGCGATGTTTGCATGTACAAAGCTAGCATTGCCCATGAATTTAGGCAGTTGTGTCAACATTCGGATACCCGATTGCGGCTTTATTATAACAAGCCTGCTAAATATAATGCTACTGATTCTGGTACGCAGACTGATGTTCAAACACAagttcttttatcaaaaactgcAGAGCAAATACAAAacgaatattttgtaaaacaagAAGCAATTAACAGTCAACAATTCCACAATACAATAACAAGTGAAGAATACAATTCAGAACCTCAAACCAATTCAGTTGTTACGGCAATTGAATCTACTATACCCACAGTGGATGTAAGCATGTCAGTTGAAGATGataaacttttcaactgtCATCTCGATTTTGAAGAACAGCCTAAATCTGTTATTGATAAAAGTTCTGAAGTTGTACCCTGTGATACTCAAACAGTAGCATGTACACAAGAATTAATTCCAGTTTCTACAAATTTAATCGATAGCGTTTGTACAATAGAGGCAGATATAAATACTGTAGAAAATCAAGTGAAAAATGATGTCAGTTATTTTACTTATCTGACTAAAGAAGAAGTCTTGCAAGAAGAAAATGATAGTCTTCAGAAAGAAGTAATGACTGATAAATCAAAAGTAATGGAAAATGCTTTTGAAAGTGAGGAAGTagaaaatagttattttgaTGCTGACAACAGTAGTCAGAGTCAAGAAGGCGGAAAATTTAAGTGTGAAACctgtttaaagttttataattctcAAAAGAGTCTGAAGAAACACCAACTTAGCCATGAAAATCAGTATAAATGTGATTTTTGTCCAAAAACATTTTGTAAGTTGGAAAACTTAGAGAAGCATAAAGTTATTCATGCAATGAAACCGCACGCTTGTCAATTATGTAACGCCAGTTTTTCCAAATCACAAAGTCTTGTCAAACACTTAAAATCTCATACTGAGAAAGTTAACGACATCATAAAGCAAATAAACACCGATGACCAGAAGGAGGAAaccgaagaaaagaaaaatttgaagagcGACGAAGAATCAGAAGACGAGGCTGGCAACGGTAACGAAGTCGACGAGTTCGAAAATGCTccagaaattttcaaatgtgaTAAATGCGGTCAGTACTGCTCTACTTTAAAGAACCTAAAGCGACATTCCCTCATTCACGGGGAAAGAAAGTACTCCTGCACTGTATGTAAAAAATGGTTTTACCGGCCTGATACCCTAAAGAAGCACGCTGAAAGACACGGCCATGGGTTACTAGACAATTTAGCTGATGATAATAAACTCTACGACTCCGATGAAGATCCATTCCCTAATGCAACTAGTAACAGTACAACTGAGAATGATAACGTTAAGAAGGAAGAAAGTGAAGAGGAAGGTACTGGCGATTATAAATGTCAGCATTGCGATAAGGTGATGGCAACGAAAAAGGGCCTTAGAAGGCACGTAGCCATGCATAAACCCAAGCCCGAACCTGCTATCTGCGAGATCTGCAAAAAGGTTTGCGCGAGTCGCGCGAGGCTGACCCTTCATCAGAAGACCCACAACAAACCCAAGGAAAAAGTCCCTCGCGAGTACCTCTGCCATATCTGCAGCAAAGTCTATCCGAGTAACTCCTCCCTTACCTACCACATGCGGACCCACACGGGCGTAAAGCCTCATGTCTGTAAGATTTGTAACAGTGGCttcacgacgacgacgagtctGGCGAACCACATGCGCATCCACACGGGTGACAAGCCCTACGTCTGCCACGTCTGCAGTGCAGCCTTCGCTGTCAGTTCTGCCTTCCGTCGCCACCTGACAAGACACACCGGTGAGGCTAATTATTTGTGCAAAACCTGTGGTAAAGCGTTCAAGCGGCTCAGTACCCTCAAAGAGCACAACTATACGCACTCCGGCGAAAAGCCTTACGTTTGCAAGACCTGCGGCGCCGCGTACAGTCATAGCGGCAGCCTCTTCGCGCACCAGAAGCGCTGCAGGGTCCAGTACACCGAGATCGTTGACGATCACCACCACGCCGTCGCCCACCACATACACGTCAACAACGTGCAATCCGCCGTGCGTTCGCTCGCTGTGATAGGCCAGATGTTCTGA
- Protein Sequence
- MAINNSYFVMPMNMDRVCRICLQENANLLPIFSNGQDASTITDLPQKIQVCGAIECHEQDGLPGLICDVCMYKASIAHEFRQLCQHSDTRLRLYYNKPAKYNATDSGTQTDVQTQVLLSKTAEQIQNEYFVKQEAINSQQFHNTITSEEYNSEPQTNSVVTAIESTIPTVDVSMSVEDDKLFNCHLDFEEQPKSVIDKSSEVVPCDTQTVACTQELIPVSTNLIDSVCTIEADINTVENQVKNDVSYFTYLTKEEVLQEENDSLQKEVMTDKSKVMENAFESEEVENSYFDADNSSQSQEGGKFKCETCLKFYNSQKSLKKHQLSHENQYKCDFCPKTFCKLENLEKHKVIHAMKPHACQLCNASFSKSQSLVKHLKSHTEKVNDIIKQINTDDQKEETEEKKNLKSDEESEDEAGNGNEVDEFENAPEIFKCDKCGQYCSTLKNLKRHSLIHGERKYSCTVCKKWFYRPDTLKKHAERHGHGLLDNLADDNKLYDSDEDPFPNATSNSTTENDNVKKEESEEEGTGDYKCQHCDKVMATKKGLRRHVAMHKPKPEPAICEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHMRIHTGDKPYVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHNYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEIVDDHHHAVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524177;
- 90% Identity
- iTF_01112868; iTF_01112038; iTF_01111209; iTF_01113646;
- 80% Identity
- -