Ekon053870.1
Basic Information
- Insect
- Eupristina koningsbergeri
- Gene Symbol
- -
- Assembly
- GCA_018907245.1
- Location
- JACCHV010000013.1:3109891-3112610[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.9e-06 0.0018 20.4 2.5 1 23 304 326 304 326 0.98 2 12 0.00015 0.057 15.7 5.1 1 23 330 352 330 352 0.98 3 12 0.00017 0.063 15.5 4.5 1 23 357 379 357 379 0.96 4 12 3.4e-05 0.013 17.7 2.0 1 23 431 453 431 453 0.97 5 12 0.00057 0.21 13.9 1.3 1 23 458 480 458 480 0.97 6 12 5.9e-05 0.022 17.0 1.5 1 23 529 551 529 551 0.98 7 12 0.00086 0.32 13.3 1.8 2 23 559 580 559 580 0.97 8 12 7.6e-07 0.00029 22.9 2.1 1 23 591 613 591 613 0.96 9 12 0.00017 0.065 15.5 1.6 1 23 619 641 619 641 0.97 10 12 0.00012 0.046 16.0 0.7 1 23 647 669 647 669 0.98 11 12 3.7e-06 0.0014 20.8 2.0 1 23 675 697 675 697 0.96 12 12 6.6e-05 0.025 16.8 0.3 1 22 703 724 703 724 0.96
Sequence Information
- Coding Sequence
- ATGGCAATAAATAATAGTTATTTCGTTATGCCGATGAACATGGATAGAGTTTGTCGCGTTTGTTTACAAGAGAATACAAATTTATCACCTATTTTTTGCAATGGTCAGGATGTTGATAATCTTTCAGATTTATCTCAAAAGATTCAAATCTGTGGAGCTGTTGAATGTCACGAACATGATGGTTTACCTGCACTGATTTGCGATGTCTGTATATATAAAGCAAGCATTGCACATGAATTCAGACAATTATGCCAGCATTCTGATACTCGATTGCGACTTTATTACAATAAACCTGCTAAATACAATGCTATTGATTCTGGAACGCAGACTGATTTAAAAACTCAAGTTCTTTTAACAAAAACTGCTGAAGAATTACAAAATCATTATTATGTAAAACAAGAAGTAATGAATAATCAGCAGTTTCATAATACAATATCAAATGAAGAGTACAATCCAGAAACACAGAATAATTCAGTTGTATCAACAATTGAGTCATCTATGCCTCCAGTTAATGTAAATATATCGGTTGAGGAAGAAAAGCTTTTTAATTGTCATCTTGATTTTCATGAACAATCTAAGGGAGTTAAAAGTTCTGAAGTTATACCCTGTGATTCACAGTCAGTAACGTGTACACAACAATTAATTCCAGTTTCTACAAATTTAATTGATAGCGTTTGTAATATAGAAACAGATATAAATACTTCAGAAAATGAAGTAAAAAATGATGTTAGTTATTATACTTACATGACAAAACATGATCATGTAAGTATTTGTGAACAAGAAAATAGTTTAGAAAAACAAACATCTAGTAAATTAAAAACTATACAGAGTAATGTTTTTAATAGTGAAGAAATTGAACATGATTATTTTGAAGCAGAGAGTGATAGTCAAAATCCAGAAGAGACAAAATATAAATGTGAAATGTGTACAAAATTTTATAGTACACAAAAAGGTTTAAAAAAGCATCAGTTAATTCATGAAAAGCAACATAAATGTGATATTTGTTTAAAAACATTTTGTAAATTAGAAAATCTAGAAAAACACAAAAATATTCATACAGCAAGACCACATGCTTGTCAATTGTGTCACACCAGTTTCTCTAAATCTGAAAGCCTTGTAAAACATTTAAAGTCTCATACTGAAAAAGTTAATGATATAATAAAACAAATAAGTTCTGATGATCAAAAAGAAGATATGGTTATTAAAAAAAATTGTAAAAGTGAAGACGATACAGAAGATGAAAATGGAAATGGTAATGAACCTGATGGCTTTGAGAATGCACCAGAAATTTTTAAATGTGAAGTGTGTGGTCAATATTGTTCAACATTGAAAAATCTAAAACGTCATGCACTTATTCATGGAGAAAGAAAATATTCTTGTACTGTCTGTAAAAAATGGTTTTTTAGACCAGATACGTTAAAAAAACACGCAGAGAGGCATGGGCATGGATTGCTAGATAATCTTGCTGATGATAATAAATTATATGACTCTGATGATGATCCATTTCCACATAGTGCTAATAGTAATCAAGTAGAAAATGATAAATTAAAAAAAGAAGAAAGTGAAGAAGAAGGCAATGGTGAGTACAAATGTCAACACTGTGACAAAGTCATGGCTACAAAGAAAGGCTTGCGAAGACATGTAGCAATGCATAAGCCTAAACCAGAACCAGCAGTTTGTGAAATATGCAAAAAAATTTGTGCGAGTCGAGCGCGTCTTACTCTTCATCAAAAAACTCATAACAAACCTAAAGAAAAAGTACCACGAGAATATTTATGTCATATTTGCAGCAAGGTGTACCCAAGTAATTCATCTCTAACTTACCATATGAGAACTCATACAGGAGTTAAGCCTCATGTGTGTAAGACTTGCAATAGTGGTTTTACTACAACTACAAGCTTAGCTAACCATATTCGTATTCATACTGGCGATAAGCCATTTGTTTGTCATGTATGCAGTGCAGCATTTGCAGTTAGCTCTGCTTTCAGAAGACACCTAACTCGACATACAGGTGAAGCCAATTATCTCTGTAAAACGTGCGGTAAAGCCTTTAAACGGCTTAGTACATTAAAAGAGCACACTTATACGCATTCCGGAGAGAAGCCTTATGTTTGTAAAACTTGTGGAGCAGCGTATAGTCACAGTGGCAGTCTCTTTGCTCATCAAAAGCGATGCAGAATTCAATACACTGAGATGGTGGTAGAGGATCATCACCACACTGTAGCTCATCATATCCATGTTAATAATGTGCAATCGGCGGTTCGATCGCTTGCTGTGATAGGTCAAATGTTTTGA
- Protein Sequence
- MAINNSYFVMPMNMDRVCRVCLQENTNLSPIFCNGQDVDNLSDLSQKIQICGAVECHEHDGLPALICDVCIYKASIAHEFRQLCQHSDTRLRLYYNKPAKYNAIDSGTQTDLKTQVLLTKTAEELQNHYYVKQEVMNNQQFHNTISNEEYNPETQNNSVVSTIESSMPPVNVNISVEEEKLFNCHLDFHEQSKGVKSSEVIPCDSQSVTCTQQLIPVSTNLIDSVCNIETDINTSENEVKNDVSYYTYMTKHDHVSICEQENSLEKQTSSKLKTIQSNVFNSEEIEHDYFEAESDSQNPEETKYKCEMCTKFYSTQKGLKKHQLIHEKQHKCDICLKTFCKLENLEKHKNIHTARPHACQLCHTSFSKSESLVKHLKSHTEKVNDIIKQISSDDQKEDMVIKKNCKSEDDTEDENGNGNEPDGFENAPEIFKCEVCGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLADDNKLYDSDDDPFPHSANSNQVENDKLKKEESEEEGNGEYKCQHCDKVMATKKGLRRHVAMHKPKPEPAVCEICKKICASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRIQYTEMVVEDHHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524177;
- 90% Identity
- iTF_01524177;
- 80% Identity
- -