Basic Information

Insect: Sycophaga agraensis
Gene Symbol: -
Assembly: GCA_018906755.1
Location: JACCIE010000011.1:3806073-3808528[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.1e-05 0.0079 17.0 4.8 1 23 304 326 304 326 0.98

2 12 1e-05 0.0013 19.4 2.7 1 23 330 352 330 352 0.98

3 12 0.0024 0.31 12.0 4.1 1 23 357 379 357 379 0.96

4 12 3.5e-05 0.0045 17.7 2.0 1 23 431 453 431 453 0.97

5 12 0.00059 0.076 13.9 1.3 1 23 458 480 458 480 0.97

6 12 6.2e-05 0.0079 17.0 1.5 1 23 528 550 528 550 0.98

7 12 0.00031 0.04 14.8 1.8 2 23 558 579 558 579 0.97

8 12 8e-07 0.0001 22.9 2.1 1 23 590 612 590 612 0.96

9 12 0.00018 0.023 15.5 1.6 1 23 618 640 618 640 0.97

10 12 0.00013 0.016 16.0 0.7 1 23 646 668 646 668 0.98

11 12 3.8e-06 0.00049 20.8 2.0 1 23 674 696 674 696 0.96

12 12 6.8e-05 0.0088 16.8 0.3 1 22 702 723 702 723 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.1e-05	0.0079	17.0	4.8	1	23	304	326	304	326	0.98
2	12	1e-05	0.0013	19.4	2.7	1	23	330	352	330	352	0.98
3	12	0.0024	0.31	12.0	4.1	1	23	357	379	357	379	0.96
4	12	3.5e-05	0.0045	17.7	2.0	1	23	431	453	431	453	0.97
5	12	0.00059	0.076	13.9	1.3	1	23	458	480	458	480	0.97
6	12	6.2e-05	0.0079	17.0	1.5	1	23	528	550	528	550	0.98
7	12	0.00031	0.04	14.8	1.8	2	23	558	579	558	579	0.97
8	12	8e-07	0.0001	22.9	2.1	1	23	590	612	590	612	0.96
9	12	0.00018	0.023	15.5	1.6	1	23	618	640	618	640	0.97
10	12	0.00013	0.016	16.0	0.7	1	23	646	668	646	668	0.98
11	12	3.8e-06	0.00049	20.8	2.0	1	23	674	696	674	696	0.96
12	12	6.8e-05	0.0088	16.8	0.3	1	22	702	723	702	723	0.96

Sequence Information

Coding Sequence: ATGGCATTAAACAATAGTTATTTTGTTATGCCAATGAACATGGATAGGGTGTGTCGCATTTGTTTGCAAGAGAATACAAATTTATCACCTATTTTCTGCAATGGACAAGATGTTACTAATTTATCAGATTTACCACAAAAAATTCAAATTTGTGGAGCTATTGAGTGTCATGAGCAAGATGGTTTACCAGCACTCATTTGCGATGTTTGTATATATAAAGCCAGCGTTGCACATGAATTTAGACAGTTATGTCAACATTCGGATACTAGATTAAGACTTTATTACAATAAACCAGCTAAATATAATGCTACCGATTCAGGTACACAGACTGAAATACAAATGCAGGCTCTATTAACTAAAACTGCTGATGATTTACAACATAATTATTTTGTAAAACAAGAAACTTTAAATAACCACCAGTTTCATAATACCATATCAAGTGAAGAATATCATTCAAACAATCAATCTAATTCTGTTGTTACAATTGAATCGGGTATACCTACAGTTAATGTTAACATTACTGATGAAGATGAAAAACTTTTTAATTGCCATCTAACTTTTGAAGAACAATCTAAAGATGTAAATAAAACCTCTGAAAGTGTATCTTGCGAATCACAATCAATAACCTGTAGACAAGAATTAATTCCAGTTTCTAATAATTTAATTGAAGAGGTGTGTACTATAGATAGCGAAATTAGTACCACTCAGAATCAAGTCAAAAATGATGTTAGTTATTTTACATACATTACAAAAGAAGATGAACCAATACAAGAGAAAGATAATTTGCAAGCACAAATATCCGATGATAAATCACAAAATATTCAGAGTGATAGTTTTAATACAGATGAAGAAATTGATCAGGATTATTATGAACCAGAAAGTGACAGTCAAAATTTAGAAGCAATGCAATTTAAATGTTTAGTGTGTTCCAAAACTTGTAATTCTCAGAAATCATTGAAAAAACATCAAATGATACATGCAAAACAATATAAATGTGAAATATGTGCAAAAACATTTTGTAAATTAGAAAATTTAGAAAAACATAAAAATATTCATATATCAAAACCACATGCATGTCAATTATGCCATGCTAATTTTTCAAAATCTCAAAGCCTTGTTAAACATTTAAAATCTCATACCGATAAAGTTAAAGATATTATTAAACAAATAAGTTCAAGTGATGTAAAGCAAGAAGACTGTATAAAAAAGAATTCTAAAAGTGAAGATGATAATGAAGATGATAGCCAAAATGACAATGAACTTGATGGATTTGAGAATGCACCAGAAATATTTAAATGTGAAGTATGTGGTCAATATTGTTCTACATTGAAAAATTTAAAACGCCACGCTCTTATACATGGAGAAAGGAAATATTCTTGTACTGTATGTAAAAAATGGTTCTTTCGACCTGATACTTTGAAAAAACATGCAGAAAGACATGGCCATGGATTGTTGGATAATCTTTCTGATGAAAATAAGCTATATGATTCTGATGATGATTTGTACCAACATAATACAAATGGTACTGCAGATAATGATAGTTTAAAGAAAGAAGAAAGTGAAGAAGAAGGCAACAATGAATATAAGTGCCAACATTGTGATAAGGTAATGGCAACTAAGAAAGGTTTAAGAAGGCATGTTGCTATGCATAAGCCTAAACCAGAACCAGCAGTCTGTGAAATATGTAAAAAGGTTTGTGCCAGTAGAGCTCGTCTTACACTTCATCAGAAGACTCATAATAAACCTAAAGAAAAAGTCCCAAGAGAATATCTTTGTCATATATGCAGCAAAGTGTACCCCAGTAACTCTTCTCTTACCTATCATATGCGAACTCATACAGGAGTAAAACCTCATGTTTGTAAAACTTGTAATAGCGGTTTTACTACTACTACCAGTTTAGCGAATCATATTCGAATTCATACTGGAGACAAGCCATTTGTTTGTCATGTTTGCAGTGCAGCTTTTGCAGTAAGCTCAGCCTTTCGGAGACATTTGACGCGTCATACAGGTGAAGCCAATTATCTTTGCAAAACATGTGGGAAAGCCTTTAAACGGCTCAGCACTTTAAAAGAACACACTTATACGCATTCCGGGGAGAAACCTTATGTCTGCAAAACTTGTGGGGCAGCTTATAGTCACAGTGGAAGTCTTTTTGCTCATCAAAAGCGATGCAGAGTTCAATACACCGAAATGGTGGTGGAAGATCATCATCACGCGGTGGCTCATCACATACATGTTAATAATGTGCAATCCGCGGTGCGGTCGCTTGCTGTGATAGGTCAAATGTTTTAA
Protein Sequence: MALNNSYFVMPMNMDRVCRICLQENTNLSPIFCNGQDVTNLSDLPQKIQICGAIECHEQDGLPALICDVCIYKASVAHEFRQLCQHSDTRLRLYYNKPAKYNATDSGTQTEIQMQALLTKTADDLQHNYFVKQETLNNHQFHNTISSEEYHSNNQSNSVVTIESGIPTVNVNITDEDEKLFNCHLTFEEQSKDVNKTSESVSCESQSITCRQELIPVSNNLIEEVCTIDSEISTTQNQVKNDVSYFTYITKEDEPIQEKDNLQAQISDDKSQNIQSDSFNTDEEIDQDYYEPESDSQNLEAMQFKCLVCSKTCNSQKSLKKHQMIHAKQYKCEICAKTFCKLENLEKHKNIHISKPHACQLCHANFSKSQSLVKHLKSHTDKVKDIIKQISSSDVKQEDCIKKNSKSEDDNEDDSQNDNELDGFENAPEIFKCEVCGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLSDENKLYDSDDDLYQHNTNGTADNDSLKKEESEEEGNNEYKCQHCDKVMATKKGLRRHVAMHKPKPEPAVCEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEMVVEDHHHAVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01524177;
90% Identity: -
80% Identity: -