Cfus019429.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000016.1:5112620-5115209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.017 15.7 2.3 1 23 282 304 282 304 0.98 2 12 0.00011 0.011 16.2 4.9 1 23 308 330 308 330 0.97 3 12 0.00045 0.046 14.3 3.8 1 23 335 357 335 357 0.96 4 12 3.6e-05 0.0036 17.8 2.0 1 23 411 433 411 433 0.97 5 12 0.0006 0.061 13.9 1.3 1 23 438 460 438 460 0.97 6 12 6.3e-05 0.0064 17.0 1.5 1 23 509 531 509 531 0.98 7 12 0.00033 0.033 14.8 1.8 2 23 539 560 539 560 0.97 8 12 8.1e-07 8.2e-05 23.0 2.1 1 23 571 593 571 593 0.96 9 12 0.00018 0.019 15.5 1.6 1 23 599 621 599 621 0.97 10 12 0.00013 0.013 16.0 0.7 1 23 627 649 627 649 0.98 11 12 3.9e-06 0.0004 20.8 2.0 1 23 655 677 655 677 0.96 12 12 6.9e-05 0.0071 16.9 0.3 1 22 683 704 683 704 0.96
Sequence Information
- Coding Sequence
- ATGGCAATAAATAATAGTTATTTCGTCATGCCGATGGACATGGATAGAGTTTGCCGTATATGTTTACAAGAAAATACAAATTTATCGCCGATTTTCTGCAACGGGCAGGACGTGGGTAATATTACGGATTTGCCGCAGAAAATTCAAGTCTGCGGAGCTGTCGAATGCGACGAGCAGGACGGCTTACCCGCGCTGATCTGCGACGTTTGCATATACAAAGCGAGCGTCGCGCACGAATTTCGACAATTATGCCAACACTCGGACGCTCGGTTGCGGCTTTATTACAACAAGCCGACCAGATACAATGCCATCGATTCCGGTACGCAGACTGACCTGCAGACCCAAGTTTTTTTAACAAAAGCAACGGAGGACTTGGAAAGCCATTACTTCGTTAAGGAAGAAGTTATTAATAATCAGCAGCAGTATCACAATGCCATGGGGAGCGAAGAGTACAGTGCAGAAGTGCAGGGTAATTCGGTGGTTAGGGGTATCGAGTCGAGCATACCCGTCGACGTGACTATATCCGTAGAGGAAGAAAAGCTGTTCGACTGTCACCTTAATTTCGACGAGCAATCCAAGGACGTTGATAAGAGTGCAGAGGTAATAGCTTGTGATACGCAGTCGGTAACGTGTACACAAGAACTAATTCCAGTTACGACTAATTTAATTGACAGCGTGTGCAACATCGAAGCCGATATAAGCACTTCGGATAACGGGCGAACGTCGTCGAGGAAATTAAAGGCCGCTCAGAGTAACAATGCCTACGAGAGCGAGGGGCTTGAAAATAATGATTATTTCGAGGGGGTGGATAGCGGCGACAGCCAAAATCAGGACGAGACGAAGTACAGGTGCGACACCTGCTCGAAATATTACAGTACGTTGAAGGGCTTGAGGAAGCACCGGATCATGCACGAGAAGCAGCACAAGTGTGACGTTTGCTCGAAAACGTTCTGCAAGCTGCAGAATCTGGAGAAGCACAGGGCCATCCACGCGGGCAAGCCACACGCATGTCAGTTATGCCACGCGAGCTTCTCGAAATCCCAAAGCTTGGCCAAGCATTTGAAGTCCCACACCGACAGAGTTAACAATGTCACGATAAAACGAAGCGGCTCCGTCAATGCTCCGTCGGAAGAGGCGATCGTTAAAAAGGCCTGTAAGAGCGAGGACGAGACGGACGACGAGGGCGGGATCGGCAACGAGCCCGACGCCTTCGAGAACGCGCCGGAGATATTCAAGTGCGAGGTCTGCGGCCAGTATTGCTCGACGTTAAAGAACCTGAAGCGCCACGCCCTCATTCACGGCGAGAGGAAGTATTCCTGCACGGTATGTAAGAAGTGGTTCTTCCGTCCGGACACGTTGAAGAAGCACGCGGAGAGACACGGCCACGGGCTGCTCGACAATCTTGCCGACGACAACAAGCTCTACGACTCGGACGACGACCTGTTCCTCCAGGCAGCGAGCAACGCCAGGCCGGACAACGATAGCGCGAGGAAGGAGGAGAGCGAGGAGGAGGGTAACGGGGAGTACAAGTGCCAGCACTGCGACAAGGTAATGGCGACGAAGAAGGGTCTGCGTAGACACGTCGCCATGCACAAGCCGAAGCCCGAGCCAGCTGTTTGTGACATATGTAAGAAGGTCTGCGCCAGCCGTGCCCGTCTGACCCTCCATCAAAAAACTCACAACAAGCCGAAGGAGAAGGTACCGCGGGAGTACCTCTGCCACATATGCAGCAAGGTATACCCGAGCAACTCGTCCCTCACCTACCACATGAGGACCCACACGGGCGTGAAGCCCCACGTATGCAAGACCTGCAACAGCGGCTTCACCACGACCACGAGCCTCGCCAATCACATTCGCATTCACACGGGCGACAAGCCATTCGTTTGCCATGTGTGCAGTGCCGCCTTCGCCGTCAGTTCCGCGTTCAGGCGGCACCTCACGCGACACACGGGCGAAGCCAATTATCTATGCAAAACGTGCGGCAAGGCCTTTAAACGGCTGAGCACCCTGAAGGAGCACACTTATACGCATTCCGGGGAGAAGCCTTACGTATGTAAGACTTGCGGAGCTGCATACAGTCACAGTGGCAGTCTCTTTGCTCATCAGAAGCGATGCCGAGTCCAGTATACCGAGATGGTCGTGGAGGACCATCATCATACGGTGGCTCACCACATACATGTTAATAATGTGCAATCCGCGGTGCGGTCACTTGCTGTGATAGGTCAAATGTTTTGA
- Protein Sequence
- MAINNSYFVMPMDMDRVCRICLQENTNLSPIFCNGQDVGNITDLPQKIQVCGAVECDEQDGLPALICDVCIYKASVAHEFRQLCQHSDARLRLYYNKPTRYNAIDSGTQTDLQTQVFLTKATEDLESHYFVKEEVINNQQQYHNAMGSEEYSAEVQGNSVVRGIESSIPVDVTISVEEEKLFDCHLNFDEQSKDVDKSAEVIACDTQSVTCTQELIPVTTNLIDSVCNIEADISTSDNGRTSSRKLKAAQSNNAYESEGLENNDYFEGVDSGDSQNQDETKYRCDTCSKYYSTLKGLRKHRIMHEKQHKCDVCSKTFCKLQNLEKHRAIHAGKPHACQLCHASFSKSQSLAKHLKSHTDRVNNVTIKRSGSVNAPSEEAIVKKACKSEDETDDEGGIGNEPDAFENAPEIFKCEVCGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLADDNKLYDSDDDLFLQAASNARPDNDSARKEESEEEGNGEYKCQHCDKVMATKKGLRRHVAMHKPKPEPAVCDICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEMVVEDHHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524177;
- 90% Identity
- -
- 80% Identity
- -