Basic Information

Insect: Megastigmus dorsalis
Gene Symbol: Prdm15
Assembly: GCA_900490025.1
Location: UELU01136438.1:21619-24264[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3e-06 0.00037 21.5 4.2 1 23 299 321 299 321 0.98

2 12 6.5e-05 0.008 17.3 5.1 1 23 325 347 325 347 0.97

3 12 0.0015 0.19 13.0 4.1 1 23 352 374 352 374 0.96

4 12 3.6e-05 0.0044 18.2 2.2 1 23 424 446 424 446 0.97

5 12 0.0008 0.099 13.9 1.3 1 23 451 473 451 473 0.97

6 12 8.4e-05 0.01 17.0 1.5 1 23 522 544 522 544 0.98

7 12 0.00042 0.052 14.8 1.8 2 23 552 573 552 573 0.97

8 12 1.1e-06 0.00013 22.9 2.1 1 23 584 606 584 606 0.96

9 12 0.00025 0.03 15.5 1.6 1 23 612 634 612 634 0.97

10 12 0.00017 0.022 16.0 0.7 1 23 640 662 640 662 0.98

11 12 5.2e-06 0.00064 20.8 2.0 1 23 668 690 668 690 0.96

12 12 9.3e-05 0.011 16.8 0.3 1 22 696 717 696 717 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3e-06	0.00037	21.5	4.2	1	23	299	321	299	321	0.98
2	12	6.5e-05	0.008	17.3	5.1	1	23	325	347	325	347	0.97
3	12	0.0015	0.19	13.0	4.1	1	23	352	374	352	374	0.96
4	12	3.6e-05	0.0044	18.2	2.2	1	23	424	446	424	446	0.97
5	12	0.0008	0.099	13.9	1.3	1	23	451	473	451	473	0.97
6	12	8.4e-05	0.01	17.0	1.5	1	23	522	544	522	544	0.98
7	12	0.00042	0.052	14.8	1.8	2	23	552	573	552	573	0.97
8	12	1.1e-06	0.00013	22.9	2.1	1	23	584	606	584	606	0.96
9	12	0.00025	0.03	15.5	1.6	1	23	612	634	612	634	0.97
10	12	0.00017	0.022	16.0	0.7	1	23	640	662	640	662	0.98
11	12	5.2e-06	0.00064	20.8	2.0	1	23	668	690	668	690	0.96
12	12	9.3e-05	0.011	16.8	0.3	1	22	696	717	696	717	0.96

Sequence Information

Coding Sequence: ATGGCAATAAATAATACCTATTTCGTCATGCCGATGAACATGGATAGAGTTTGTCGCATTTGTTTGCAAGAGAATGCAAACTTATCGCCTATTTTTTGCAATGAGCAAGATGTAGGCAATCTTACTGATTTGCCACAGAAAATTCAAATCTGTGGAGCTGTTGAATGCCATGAGCAGGATGGCCTGCCTACTCTGATCTGCGATGTCTGTATATATAAGGCCAGTGTTGCACACGAATTCAGACAATTATGCCAACACTCGGATGCTCGATTACGGCTTTATTATAATAAGCCTGCTAAATATAATGCTATGGATTCCGGTACACAGACTGATTTACAAACACAGGCCCTTTTATCAAAAACTGCAGaagaattacaaaataattattttgtaaaatcagAAGTGTTGAATAATCAACAATATCGTAGTACAATATCAAATGAAGAGTACAATCCAGAAGTACAGGCAAATTCAGTTGTTACAACAATTGAATCAACTATGCCTACCGTTGATGTCAACATATCAGATCAAgataaactttttaattgtCATCTTGCTTTTGAGCAGCCTAAAGATGTTAAAACTTCTGAAGTTGTGCCTTGTGATACCCAGTCAGTAACATGTACACAGGAATTAATTCCAGTTTCTTCAAATTTAATTGATGACGTTTGTACTATAGAGGCAGAAATGAGTTCTGGAGAAAATGTTGTAAAAAATGacgttaattattttacttacatAACTAAACAGGAAATTATTGAAGAGGAGAATTGTTTACAAAAGGAAAATTCGAATGAAAAAGTAGAAACGTTGGAGAATAACACTTTTGAAAGTGAAGAAATGGATAACGATTATTTTGATGCTGAAAGTGAACCAAATCCAGAAGAGGTGAAATTCAAATGCGAACATTGTTCCAAGTCTTACAGCACTCAGAAAGGTTTAAAGAAGCATCAATTAGTACACGAAAAACAACATAAATGTGAAGTATGTTCAAAAATGTTTTGTAAGCAGGAAAATTTAGAAAAGCACAAACTCATTCACATAACAAAGCCTCACGCTTGCCGATTGTGCCATGCTAGTTTCTCCAAGTCTCAAAGTCTCGCTAAACACTTAAAATCCCACACGGATAACGTTAACAACAGCAAGCAAATCAATTCCAACGATCGAAAAGAAATCCTGGATGCAAAGAATTCCAAAACTGAGGACGATTCGGAAGACGACAGCGGGAACGGCAACGAACCCGACGGATTCGAGAACGCACCGGAGATCTTCAAATGCGAGGAATGTGGCCAATATTGTTCTACGTTAAAAAACTTGAAGCGCCACGCTCTCATCCACGGAGAAAGAAAGTATTCCTGTACCGTTTGTAAAAAGTGGTTCTTCCGACCTGACACTTTAAAGAAACACGCTGAGCGACACGGACACGGGTTACTCGACAATCTAGCCGACGACAACAAACTGTACGACTCGGACGACGATCCATTCCCACACACAACAAATACTAGTACAGCAGAAAACGACAGCTCGAAGAAGGATGAAAGCGACGACGAATCCAAAGGGGAATACAAGTGTCAGCACTGCGATAAAGTGATGGCGACGAAGAAGGGCTTGCGAAGGCACGTCGCCATGCACAAGCCCAAGCCTGAACCTGCCGtttgcgagatctgtaaaaagGTGTGCGCCAGTCGTGCTCGGCTCACTCTCCATCAAAAGACTCACAACAAGCCGAAGGAGAAGGTACCTCGAGAATATCTCTGCCACATCTGCAGCAAAGTCTATCCGAGCAACTCGTCGCTCACGTACCACATGCGAACCCATACAGGTGTCAAACCCCATGTCTGCAAGACCTGCAATAGCGGTTTTACCACGACGACGAGCCTTGCGAATCACATTCGCATCCACACCGGCGATAAGCCCTTCGTCTGTCACGTGTGCAGCGCGGCCTTTGCGGTCAGTTCCGCTTTCCGTAGGCATTTAACGCGACATACGGGCGAAGCCAATTATCTGTGCAAAACGTGTGGAAAAGCCTTCAAACGGCTCAGTACATTGAAAGAGCACACTTACACGCATTCCGGCGAGAAGCCCTATGTCTGCAAGACTTGTGGAGCAGCTTACAGTCACAGTGGTAGCCTATTTGCTCATCAGAAGCGATGCAGAGTACAGTATACCGAGATGGTCGTGGAGGATCATCATCACTCGGTCGCCCATCATATCCATGTTAATAATGTGCAATCCGCGGTGCGGTCGCTTGCTGTGATAGGTCAGATGTATTGA
Protein Sequence: MAINNTYFVMPMNMDRVCRICLQENANLSPIFCNEQDVGNLTDLPQKIQICGAVECHEQDGLPTLICDVCIYKASVAHEFRQLCQHSDARLRLYYNKPAKYNAMDSGTQTDLQTQALLSKTAEELQNNYFVKSEVLNNQQYRSTISNEEYNPEVQANSVVTTIESTMPTVDVNISDQDKLFNCHLAFEQPKDVKTSEVVPCDTQSVTCTQELIPVSSNLIDDVCTIEAEMSSGENVVKNDVNYFTYITKQEIIEEENCLQKENSNEKVETLENNTFESEEMDNDYFDAESEPNPEEVKFKCEHCSKSYSTQKGLKKHQLVHEKQHKCEVCSKMFCKQENLEKHKLIHITKPHACRLCHASFSKSQSLAKHLKSHTDNVNNSKQINSNDRKEILDAKNSKTEDDSEDDSGNGNEPDGFENAPEIFKCEECGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLADDNKLYDSDDDPFPHTTNTSTAENDSSKKDESDDESKGEYKCQHCDKVMATKKGLRRHVAMHKPKPEPAVCEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYTEMVVEDHHHSVAHHIHVNNVQSAVRSLAVIGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01524177;
90% Identity: iTF_00969836;
80% Identity: -