Ufer015606.1
Basic Information
- Insect
- Udea ferrugalis
- Gene Symbol
- -
- Assembly
- GCA_950022985.1
- Location
- OX465528.1:11154790-11163315[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-11 6.1e-08 33.1 0.0 4 39 180 216 177 220 0.90 2 4 3.1e-11 4.6e-08 33.5 0.3 2 39 232 269 231 272 0.92 3 4 1.1e-15 1.6e-12 47.8 0.1 2 45 287 331 286 331 0.96 4 4 9.3e-19 1.4e-15 57.6 0.0 1 43 338 381 338 382 0.96
Sequence Information
- Coding Sequence
- ATGCCAGGGCACGGTGTGTCCCAAGTGAAGTGTGAGCCGCAGTCGGATGAGGAAGACAGCAATTCCCAGTACTCGCTCGGCTACTTGACCAATCAGCCAACCCTCCTTGGACACTGTCCAGTTAAACTAGAAAATGGCATCCATCATCAGAATAATAGCACCGGAGCCGGGCATCTTCTACAGCATTTACAGACAGGGTTGGAAGAATTGGCACCGCCGGCGCCGGCGGGTCCCGCAGCCACCCCTGTGTGCGTCAAACAGGAGCCACCAGACGCGCCACCCGCGCTGACACTTGAGAACCTCGAGCCCGCTCCGCCTGCCAGCTCCACGGGTTCTACTTTGCTAGACCGACACATGGCGATGTTAAGCTCAACCGAAGTGCCTGAGTCTTCGGACTTTATGCCACTGTTAGCCGTTAAAGATGAACCGCTCTCTGAAGGAGAGCAACAACACATGAGCGGTGAAGATACCAGTGATTCATGCGGTCAATCAGAAGCTACGTTTCCCCGAGGCAGCCCCAAAAGTTGGACCCAGCGAGACATGGACAATGCTCTGGACGCGCTGCGCAACCACAACATGAGCCTGACCAAAGCGTCAGCCACTTATGGGATTCCGTCCACAACTCTTTGGCAACGCGCGCATCGGCTCGGCATCGACACACCCAAAAAGGAAGGTGCATCGAAGTCTTGGAGTGAAGCTGATCTACGGGGGGCTCTTCACGCGTTGAGGGCTGGCGCTATATCCGCTAATAAAGCTAGCAAGGCGTATGGCATACCAAGCAGCACCCTGTACAAGATAGCCCGTCGCGAAGGCATCCGCCTCGCAGCGCCGTTCAACGCCGCGCCGACCGCGTGGCGCCGCGCCGACCTCGACCGCGCGCTCGCCTCCATCCGCGCGGGCGCCGCCAGCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACCGGAACGCTATACGGTCGATGTAAAAGAGAGGGCATTGAATTGTCTCGCTCGAATCCAACGCCTTGGTCAGAAGATGCTATGGGAGAAGCCTTAGAAGCAGTGAGGGTGGGTCAGATGTCTATAAACCAGGCTGCCATTCATTATAATCTACCCTATTCGTCGCTCTACGGCCGTTTCAAGAGGTGCAAGTACACGACTCAGGGAGTCCCACCAATACAACAGCAGGATGTCCACAAAAACGTAGAAATGGAGCACCAGACTCACCCTTCTGAAATGTACTATCATCAACCTGTTCAACCTTTGCATAATCCAGAGGAAAACGCAATCCAGCACCCGTACTACCATGGAAGCACCATGACCGATGGTTCCGTGAACAATGTACTTCACGATCAGTACTATGGGCAGATGTATTACAGCCAGAATTGCAACGGGATCGTGACCAGCTGA
- Protein Sequence
- MPGHGVSQVKCEPQSDEEDSNSQYSLGYLTNQPTLLGHCPVKLENGIHHQNNSTGAGHLLQHLQTGLEELAPPAPAGPAATPVCVKQEPPDAPPALTLENLEPAPPASSTGSTLLDRHMAMLSSTEVPESSDFMPLLAVKDEPLSEGEQQHMSGEDTSDSCGQSEATFPRGSPKSWTQRDMDNALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLDRALASIRAGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYTTQGVPPIQQQDVHKNVEMEHQTHPSEMYYHQPVQPLHNPEENAIQHPYYHGSTMTDGSVNNVLHDQYYGQMYYSQNCNGIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00364836; iTF_01071561; iTF_01281230; iTF_01282147; iTF_00075396; iTF_00076389; iTF_01279182; iTF_01125386; iTF_01124527; iTF_01280107; iTF_01503767; iTF_00960857;
- 90% Identity
- iTF_01503767;
- 80% Identity
- -