Onub017234.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979747.1:717128-726454[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.5e-11 7.6e-08 32.9 0.0 4 39 131 167 128 171 0.90 2 4 4.2e-11 4.2e-08 33.7 0.3 2 39 183 220 182 223 0.92 3 4 5.5e-15 5.6e-12 46.1 0.1 2 45 238 282 237 282 0.96 4 4 9.1e-18 9.2e-15 55.0 0.1 1 40 289 329 289 333 0.92
Sequence Information
- Coding Sequence
- ATGACGTCACACAGGTGGGAGGGAAAAACCAGTGCCTCTAAGCAGGAGCCGCCGGACGCGCCGCCCGCGTTGCTCACCCTGGAGAACCTGGAGCCTGCGCTCTCCGCCAGCGCCACGGAGCCGCCGGACGCGCCGCCAGCGCTCACTCTCGAAAACCTGGAGCCTGCGCTCACCGCTAGCGCCACGGGCTCAACGTTGCTGGACAGACACATGGCGCTGCTTAACCACGCCGAGCTGGCAGATTCCTCGGACTTCATGCCGCTGATGGCCGTCAAGGACGAGCCCTTGTCTGAAGGAGAGCAGCAGCTGTTCCCTGGCGAAGACTCGAGCGACTCGTGCGGCGCTCCCGAGCCTGCCCCGCGGGCGAGTCCTAAGGGCTGGACGCAGCGCGACATGGACAGCGCTTTGGACGCCCTCAGGAACCGCAACATGAGCCTTACCAAGGCATCAGCGACATACGGCATCCCGTCCACGACGCTATGGCAGCGTGCGCACCGTCTGGGAATCGACACGCCGAAGAAGGAAGGTGCGTCCAAGTCCTGGAGCGAAGCGGATCTTCGTGGAGCCCTACACGCGTTGAGAGCCGGCGCTATCTCGGCGAACAAAGCTAGTAAAGCATacgGCATCCCTAGCAGCACGCTGTATAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCTTTCAACGCCGCGCCCACGGCCTGGCGCCGCGCCGACCTCGAGCGGGCCCTGGCTTCCATCCGCTGCGGCGCCGCTAGCGTGCAGCGCGCCGCTTCGCAGTATGGCATCCCTACCGGCACATTGTACGGGCGGTGTAAGCGCGAGGGCATCGAGCTGTCGCGGTCGAACCCCACGCCTTGGTCCGAAGACGCCATGGGGGAAGCCTTGGAAGCTGTCAGGGTAGGCCAGATGTCTATCAACCAGGCCGCCATCCACTACAACCTGCCCTACTCGTCGCTCTACGGCCGCTTCAAGAGGATACACGCCGGCAGCAAGTTCCCCATACAAAACCTCCCACCACAGCAGCAGGATTTGCACAAAAACGTGGAGATGGATCACCAGGCGCCTCCTCCAGAAATGTACTTCCAGCAGCCTCTACAGAACCACACACAAACGGACGACAACAGTGTCTTACAGAACCAGTACTACCAGAACAACACTATGAATGACGTTCCCATGCACAATAATATTCACGAACAGTATTACACGGGGCAGGCGATGTATTACAACCAAAGTTGTAACGGTATAGCGACCAGTTGA
- Protein Sequence
- MTSHRWEGKTSASKQEPPDAPPALLTLENLEPALSASATEPPDAPPALTLENLEPALTASATGSTLLDRHMALLNHAELADSSDFMPLMAVKDEPLSEGEQQLFPGEDSSDSCGAPEPAPRASPKGWTQRDMDSALDALRNRNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRIHAGSKFPIQNLPPQQQDLHKNVEMDHQAPPPEMYFQQPLQNHTQTDDNSVLQNQYYQNNTMNDVPMHNNIHEQYYTGQAMYYNQSCNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502894;
- 90% Identity
- iTF_01124527;
- 80% Identity
- -