Cpun012376.2
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062089.1:2145301-2153231[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.3e-11 5.2e-08 33.1 0.0 4 39 179 215 176 219 0.90 2 5 4e-11 3.9e-08 33.5 0.3 2 39 231 268 230 271 0.92 3 5 0.00018 0.17 12.2 1.5 2 25 286 309 285 309 0.93 4 5 2.1e-09 2.1e-06 28.0 0.0 19 45 310 337 310 337 0.96 5 5 1.3e-18 1.3e-15 57.5 0.0 1 43 344 387 344 388 0.96
Sequence Information
- Coding Sequence
- ATGCCAGGGCACGGGGTGTCCCACGTGAAGAGTGAGCCGCCGTCGGACGAGGAAGACAGCAATTCGCAATACTCGCTCGGGTACTTGACCAATCAGGCGCCTTTATTGGGACATTGTGCCGTAAAGATAGAAAATGGCGCCCAAAACGGGAGCAGTGACTCCGCCGGACACATTCTACAACATTTGCAGACAGGGCTGGAGGAACTGGCACCGCCGGCGCCGGCGGGCCCCGCCGCCACGCCGGTGTGCGTGAAGCAGGAACCGCCAgacgcgccgcccgcgctcATGCTCGAGAACCTCGAGCCTGCACCGTCTGTCAGCTGCACGGGCTCCACACTTCTGGATAGGCACATGGCTATGCTGAGCTCAAACCAAGTGCCTGAGTCATCTGACTTCATGCCGCTGTTAGCCGTCAAAGACGAACCGCTGTCTGAAGGAGAGCAACAGCACATGAGCGGCGACGACACCAGCGACTCGTGCGGCCAGCCAGAGCACGGCCTGCCCCGCAGCAGTCCCAAGAGCTGGACGCAGCGCGACATGGACAACGCGCTCGACGCGCTGCGCAACCACAACATGAGTCTGACTAAGGCATCAGCTACCTACGGCATACCGTCCACAACGCTCTGGCAGCGCGCGCATCGCCTCGGCATCGACACGCCGAAGAAGGAGGGCGCCTCCAAGTCCTGGAGCGAGGCCGACCTGAGGGGAGCCCTGCACGCCCTGAGGGCTGGCGCTATATCCGCTAATAAGGCTAGCAAGGCTTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCCGCGCCCACGGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTCGCCTCCATCCGCGCCGGCGCCGCCAGCGTGCAGCGCGCCGCCTCGCACGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACAGGCACATTGTACGGGCGATGTAAGAGGGAAGGCATCGAGTTGTCCCGTTCAAACCCGACCCCGTGGTCCGAGGACGCTATGGGGGAAGCCTTGGAAGCTGTCAGGGTGGGACAAATGTCGATAAACCAAGCGGCGATACACTATAACTTGCCGTACTCTTCCCTCTACGGCCGGTTCAAGAGGTGCAAGTATCAGACGCAGGGCCTCCAACCAACACAGCAGCAAGACACCCAAAAGCATTCAGAGAGCGAATACCAACCTCACCCCCCAGAGATGTACTACCCACCCGTGCAAGGGCCGCTCCATACGCAGGAAGAGACCGTTCAGCACCCGTACTACCCGGCAGTGAGCGAGCCAGCCATGCACAGCAGCACGCTCCACGAACAGTACTACGGGGGGATGTACTACGGCCAGAACTGTAGCATTGCGACCAGTTGA
- Protein Sequence
- MPGHGVSHVKSEPPSDEEDSNSQYSLGYLTNQAPLLGHCAVKIENGAQNGSSDSAGHILQHLQTGLEELAPPAPAGPAATPVCVKQEPPDAPPALMLENLEPAPSVSCTGSTLLDRHMAMLSSNQVPESSDFMPLLAVKDEPLSEGEQQHMSGDDTSDSCGQPEHGLPRSSPKSWTQRDMDNALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRAGAASVQRAASHVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGLQPTQQQDTQKHSESEYQPHPPEMYYPPVQGPLHTQEETVQHPYYPAVSEPAMHSSTLHEQYYGGMYYGQNCSIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502894;
- 90% Identity
- -
- 80% Identity
- -