Uoli003844.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376353.1:1023429-1035943[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 5.6e-08 33.1 0.0 4 39 178 214 175 218 0.90 2 4 9.9e-11 4.2e-08 33.5 0.3 2 39 230 267 229 270 0.92 3 4 3.4e-15 1.5e-12 47.8 0.1 2 45 285 329 284 329 0.96 4 4 3.2e-18 1.4e-15 57.5 0.0 1 43 336 379 336 380 0.96
Sequence Information
- Coding Sequence
- ATGCCAGGGCACGGTGTGTGCCAAGTGAAGTGTGAGCCGCAGTCGGATGAGGAAGACAGCAATTCCCAGTACTCACTCGGCTACTTGACCAATCAGCCAACCCTCATCGGACACTGTCCAGTTAAACTAGAAAATGGAATACACCACGAGAACAATACCTCAGGAAATCTGCTACAGCATTTGCAGACGGGCCTGGAAGAGCTGGCACCGCCGGCGCCGGCGGGCCCCGCAGCTACCCCAGTGTGCGTGAAGCAGGAGCCGCCCGACGCGCCGCCCGCGCTCACACTGGAGAACCTCGAACCAGCACCGCCTGCCAGCATTACAGGTTCTACGTTGTTAGACCGACATATGGCGATGTTGAGCTCAACCGACCTGCCTGAGTCTTCAGAATTCATGCCCTTATTAGCTGTCAAAGATGAGCCGCTCTCTGAAGGAGAGCTACAACATATGAGTGGGGAAGATACTAGCGATTCATGTGGCCAATCGGAAACCACATTCGCTCGTGGCAGCCCCAAGAGTTGGACCCAGCGGGATATGGATAATGCCCTCGACGCTCTGCGCAACCACAACATGAGTCTAACCAAAGCATCAGCGACCTACGGAATTCCGTCCACGACTCTTTGGCAACGCGCACATAGGCTTGGCATCGACACTCCCAAAAAAGAAGGCGCCTCCAAGTCTTGGAGCGAAGCTGACCTGCGGGGTGCACTCCATGCTTTGAGGGCTGGTGCTATATCTGCCAACAAAGCTAGTAAGGCGTATGGTATCCCAAGCAGCACACTGTACAAGATAGCCCGCCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACCGCGTGGCGCCGCGCCGACCTCGACCGCGCGCTCGCCTCCATCCGCGCCGGCGCCGCCAGCGTGCAGCGGGCCGCCTCGCAGTACGGGATACCCACAGGAACATTATACGGGCGGTGCAAGCGAGAGGGCATTGAATTATCTCGCTCCAACCCAACGCCTTGGTCAGAAGATGCTATGGGAGAAGCCTTAGAAGCAGTGAGGGTAGGCCAAATGTCGATAAATCAAGCTGCGATTCACTACAATCTACCTTATTCATCTCTCTACGGACGTTTTAAGAGGTGCAAGTACTCGACACAGGTCGTCCAACCAATACAACAGCAGGATGTTCACAAAAACATTGAAATAGAGCACCCAACTCAACCTCCAGAAATGTATTTCCATCAACCGGTTCAACCCCTACACAACCCCGAGGAAAGCATACCCCAGCATACATACTACCATGCAAGTTCAATGACCGATGAATCCATGAATAATGTACTTCACGATCAGTACTACGGGCAGATGTACTACAGCCAAAGTTGCAGCGGAATTGCGACCAGTTGA
- Protein Sequence
- MPGHGVCQVKCEPQSDEEDSNSQYSLGYLTNQPTLIGHCPVKLENGIHHENNTSGNLLQHLQTGLEELAPPAPAGPAATPVCVKQEPPDAPPALTLENLEPAPPASITGSTLLDRHMAMLSSTDLPESSEFMPLLAVKDEPLSEGELQHMSGEDTSDSCGQSETTFARGSPKSWTQRDMDNALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLDRALASIRAGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYSTQVVQPIQQQDVHKNIEIEHPTQPPEMYFHQPVQPLHNPEESIPQHTYYHASSMTDESMNNVLHDQYYGQMYYSQSCSGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502894;
- 90% Identity
- iTF_01502894;
- 80% Identity
- -