Pdes016084.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992856.1:744776-752470[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-10 7.4e-08 33.0 0.0 4 39 176 212 173 216 0.90 2 4 1.9e-10 5.3e-08 33.5 0.3 2 39 228 265 227 268 0.92 3 4 1.1e-14 3.1e-12 47.0 0.2 2 45 283 327 282 327 0.96 4 4 4.3e-17 1.2e-14 54.8 0.1 1 39 334 373 334 378 0.88
Sequence Information
- Coding Sequence
- ATGCCGGGGCACGGCGTGTCTCTGGTGAAGTGTGAGCCGCAGTCAGATGAAGAAGACAGTGACTCGCAGTACTCGCTCAACTACTTGACCAATCAGCTACCTTTAATACAGTGCCCAATAAAATTAGAGAATGGAATCCAGCACAAAAATAATAACCATAGCCACATTTTGGAAGACCTTCAGACGGGCCTGGAAGAGTTGGCTCCGCCAGCGCCAGCGGGGCCCGCCGCCACGCCGGTGTGCGTCAAGCAGGAGCCCGCGGATGCGCCCCCCGCGCTCACGCTCGAGAATCTGGAACCCGCACCCAGCTCTATCTCCACTGGCTCAACGTTGCTGGACCGACACATGGCAATGCTTACCCACAGAGAAGTGCCTGATTCTTCCGACTTCATGCCTCTTCAGGCTGTCAAAGACGAGCCGTTATCTGAAGGAGAGCAACATCAGCTGTTCGGCGAAGACTCGAGCGACTCGTGCAGTCAGACGGAGCCGGCGCCCCGCTCCAGCCCCAAGAGCTGGACGCAGCGGGACATGGACAACGCGCTCGATGCGCTGAGGAACCGCAACATGAGCCTCACTAAGGCATCAGCAACGTACGGCATTCCGTCCACGACGCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAAGGCGCTTCCAAGTCCTGGAGTGAAGCTGATTTGCGAGGGGCGCTGCACGCGTTAAGAGCTGGTGCCATTTCCGCGAATAAGGCTAGCAAGGCATACGGTATCCCCAGCAGCACCCTGTACAAGATAGCGCGGCGCGAAGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGGCGCGCCGACCTGCAGCGCGCGCTCGCCTCCATCCGCGCCGGCGCCGCCAGCGTGCAGCGCGCCGCCACGCAGTACGGGATACCCACCGGCACGTTATACGGACGGTGTAAGAGAGAAGGTATTGAACTATCTCGATCCAACCCGACACCATGGTCTGAAGATGCCATGGGAGAAGCACTGGAAGCTGTGAGGGTTGGTCAAATGTCAATAAACCAAGCAGCTATCCACTACAACTTGCCATACTCCTCGCTCTACGGCCGGTTTAAGAGGATCCATTCCGTGAGCAAGTTCCATCCGCAGAACTTGCAGCCTTTACAGCAGCAGGAGGTCAATAAAAGCTTGGAAATGGACCAACAAAATCATCCGCCTGAGATGTATTACCAGCAAACTTTGCAGGGACAATCGATGCACACACCGGACGAAAGCCCATATGTAGTACATAACCAGTACTTTAATAATACTTTGAATGAAGTTTCGATGCACAATAACGTTCTACACGAACAGTACAACTCGGGGCAGGCGATGTATTACAGCCAAAGCTGTAACGGCATCGCGACCAGTTGA
- Protein Sequence
- MPGHGVSLVKCEPQSDEEDSDSQYSLNYLTNQLPLIQCPIKLENGIQHKNNNHSHILEDLQTGLEELAPPAPAGPAATPVCVKQEPADAPPALTLENLEPAPSSISTGSTLLDRHMAMLTHREVPDSSDFMPLQAVKDEPLSEGEQHQLFGEDSSDSCSQTEPAPRSSPKSWTQRDMDNALDALRNRNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALASIRAGAASVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRIHSVSKFHPQNLQPLQQQEVNKSLEMDQQNHPPEMYYQQTLQGQSMHTPDESPYVVHNQYFNNTLNEVSMHNNVLHEQYNSGQAMYYSQSCNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502894;
- 90% Identity
- -
- 80% Identity
- -