Nnoc012863.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292494.1:14738429-14743200[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 5e-08 33.1 0.0 4 39 177 213 174 217 0.90 2 4 1.6e-11 3.7e-08 33.5 0.3 2 39 229 266 228 269 0.92 3 4 5.8e-16 1.3e-12 47.8 0.2 2 45 284 328 283 328 0.96 4 4 5.3e-19 1.2e-15 57.5 0.0 1 43 335 378 335 379 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGACACGGACTGTCGCAAGTGAAGTGTGAGCCGCAATCAGACGAGGAAGACAGCAATTCCCAGTACTCCCTTGGCTACTTAACCAATCAGGCACCACTTTTAGGGCACTGTGCAGTTAAAGTAGAAAATGGTATCCGACATGACGACAATACCGGACACATCCTACAGCATTTACAGACAGGACTGGAGGAACTGGcaccgccggcgccggcgggcCCCGCCGCCACGCCCGTCTGCGTCAAGCAGGAGCCGCCGGATGCACCGCCCGCGCTCATGCTGGAGAATCTCGAGTCCACCACCTTGTCTGCTTTTACGGGTTCAACGCTACTTGACAGACATTTGGAAATGCTGAGCTCAAATCAAGTGCCTGAGTCTACGGACTTTATGCCATTGATGGCCGTTAAAGATGAACCACTTTCCGAAGGAGagCAACAGCATATGAGCGGTGATGACACCAGTGACTCGTGCGGACAGCCCGAGCCGAGCCTCCCTCGCAGCAGTCCGAAGAGCTGGACGCAGCGAGACATGGACAATGCTCTCGATGCACTTCGGAATCATAATATGAGTCTTACAAAGGCATCAGCAACATACGGCATCCCATCCACAACTCTGTGGCAGCGAGCGCACCGGCTCGGCATAGACACGCCGAAGAAGGAGGGCGCGTCCAAGTCATGGAGCGAGGCAGACTTACGCGGCGCCCTGCACGCACTGAGAGCGGGGGCCATCTCCGCCAATAAAGCTAGTAAAGCGTATGGCATCCCCAGCAGCACTCTGTACAAGATCGCTCGGCGTGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCTACGGCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCGCCATCCGCGCCGGCGCCAGCAGCGTGCAGCGCGCCGCCTCGCAGTACGGCATACCCACCGgaACTCTGTACGGGCGATGCAAACGAGAAGGTATAGAGCTGTCCCGGTCTAATCCAACTCCGTGGTCAGAAGACGCTATGGGAGAAGCCCTGGAAGCTGTCAGAGTGGGGCAGATGTCAATAAATCAGGCAGCCATTCACTACAATTTACCATACTCCTCACTTTATGGCCGATTTAAGAGGTGCAAGTACCAAACTCAAGGCTTACAGCCAATGCAACAACAAGATATCCACAAAAACGTAGATATGGATCATCAAGGTCCCCCTCCTGAGATGTACTACCAGCATTTTCAGGGGCCGGTCAACAACGCCGAGGAAACAGCCGTCCAGCATCAGTACTACGGGTCACCAATGACCGAGGCTGCTCATGCCAGCGTAGCGCACGACCAGTTCTACGCGGGGCAGATGTATTACAGCCAGAACTGCAGCGGCATCGTGACTAGTTGA
- Protein Sequence
- MPGHGLSQVKCEPQSDEEDSNSQYSLGYLTNQAPLLGHCAVKVENGIRHDDNTGHILQHLQTGLEELAPPAPAGPAATPVCVKQEPPDAPPALMLENLESTTLSAFTGSTLLDRHLEMLSSNQVPESTDFMPLMAVKDEPLSEGEQQHMSGDDTSDSCGQPEPSLPRSSPKSWTQRDMDNALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRAGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGLQPMQQQDIHKNVDMDHQGPPPEMYYQHFQGPVNNAEETAVQHQYYGSPMTEAAHASVAHDQFYAGQMYYSQNCSGIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502894;
- 90% Identity
- iTF_00960857;
- 80% Identity
- -