Ofur002978.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:110440-124025[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-11 3.7e-08 32.7 0.0 4 39 176 212 173 216 0.90 2 4 1.5e-11 2.1e-08 33.5 0.3 2 39 228 265 227 268 0.92 3 4 2e-15 2.7e-12 45.9 0.1 2 45 283 327 282 327 0.96 4 4 2.2e-18 3e-15 55.4 0.1 1 42 334 376 334 378 0.91
Sequence Information
- Coding Sequence
- ATGCCGGGGCACGGCGTGTCTCAAGTGAAGTGTGAGCCGCAGTCGGACGAGGAAGACAGCAATTCGCAGTACTCACTCGGCTACTTGACCAATCAGCTACCTTTAAGGCATTGtccaattaaaatagaaaatggtGTCCACcacgaaaataataattcaggCCACATTTTACAAGACTTGCAGACGGGGCTGGAGGAACTGGCACCGCCAGCGCCGGCGGGCCCCGCCGCCACGCCGGTTTGCGTCAAGCAGGAGCCGCCGGACGCGCCGCCCGCGCTCACTCTCGAAAACCTGGAGCCTGCGCTCACCGCCAGCGCCACGGGCTCAACGTTGCTGGACAGACACATGGCGCTGCTCAGCCACTCCGAGCTGGCAGATTCCTCGGACTTCATGCCGCTGATGGCCGTCAAGGACGAGCCCTTGTCTGAAGGAGAGCAGCAGCTGTTCCCTGGCGAAGACTCGAGCGACTCTTGCGGCGCGCCCGAACCGGCGCCCCGAGCCAGTCCAAAGGGCTGGACGCAGCGCGACATGGACAGCGCCCTAGACGCTCTTAGGAACCGCAACATGAGCCTTACCAAGGCGTCAGCAACATACGGCATCCCGTCCACAACGCTATGGCAGCGCGCGCACCGTCTGGGAATCGACACGCCGAAGAAGGAAGGTGCGTCCAAGTCCTGGAGCGAAGCGGATCTTCGTGGAGCCCTACACGCCTTGAGAGCCGGCGCCATCTCGGCGAATAAAGCTAGTAAAGCATacgGCATCCCCAGCAGCACGCTATACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCCACGGCCTGGCGCCGCGCCGACCTCGAGCGGGCCCTGGCTTCCATCCGATGCGGCGCCGCTAGCGTGCAGCGCGCTGCTTCGCAGTATGGCATCCCTACCGGCACCTTATACGGGCGGTGTAAGCGCGAGGGCATCGAGCTGTCGCGGTCGAACCCCACGCCTTGGTCCGAAGACGCTATGGGGGAAGCACTGGAAGCTGTCAGGGTGGGCCAGATGTCCATCAACCAGGCCGCTATCCACTACAACCTGCCCTACTCGTCGCTCTACGGCCGCTTCAAGAGGATACACGCGAGCAGCAAGTTCCCCATACAAAACCTCCAACCACAGCAGCAGGATTTGCACAAGAACGTGGAGATGGATCACCAGGCTCCTCCTCCAGAAATGTATTTCCAGCAGCCTTTGCAAAACCACACACAAACGGACGACAACAGTGTCTTACAGAACCAGTACTACCAGAACAACACCATGAATGACGTTCCCATGCACAATAATATCCACGAACAGTATTACACGGGGCAGGCGATGTACTACAACCAAAGTTGTAACGGTATAGCGACCAGTTGA
- Protein Sequence
- MPGHGVSQVKCEPQSDEEDSNSQYSLGYLTNQLPLRHCPIKIENGVHHENNNSGHILQDLQTGLEELAPPAPAGPAATPVCVKQEPPDAPPALTLENLEPALTASATGSTLLDRHMALLSHSELADSSDFMPLMAVKDEPLSEGEQQLFPGEDSSDSCGAPEPAPRASPKGWTQRDMDSALDALRNRNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRIHASSKFPIQNLQPQQQDLHKNVEMDHQAPPPEMYFQQPLQNHTQTDDNSVLQNQYYQNNTMNDVPMHNNIHEQYYTGQAMYYNQSCNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502894;
- 90% Identity
- iTF_01125386;
- 80% Identity
- -