Tiud003155.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus iudaicus
Gene Symbol
ECU06_1150
Assembly
GCA_030142595.1
Location
JARQTH010000246.1:248510-253526[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.027 1.8 9.2 0.2 2 23 300 321 299 321 0.97
2 16 1.3e-06 8.7e-05 22.8 3.4 1 23 331 353 331 353 0.99
3 16 1.3e-06 8.9e-05 22.7 1.1 1 23 359 382 359 382 0.95
4 16 5.7e-05 0.0039 17.6 0.6 1 23 388 410 388 410 0.98
5 16 4e-05 0.0028 18.0 0.9 1 23 416 438 416 438 0.96
6 16 4.6e-05 0.0031 17.9 3.0 1 23 444 466 444 466 0.97
7 16 9.8e-05 0.0067 16.8 0.5 3 23 474 494 472 494 0.97
8 16 0.0072 0.49 11.0 6.6 1 23 617 640 617 640 0.92
9 16 0.081 5.6 7.6 1.6 1 23 702 725 702 725 0.91
10 16 5.5e-05 0.0038 17.6 1.8 1 23 758 780 758 780 0.98
11 16 1.5e-05 0.0011 19.4 1.6 1 23 786 809 786 809 0.97
12 16 3.7e-06 0.00026 21.3 0.3 1 23 815 837 815 837 0.98
13 16 1.5e-07 1.1e-05 25.7 0.6 1 23 843 865 843 865 0.99
14 16 7.4e-05 0.0051 17.2 0.5 1 23 871 893 871 893 0.98
15 16 1.4e-05 0.00095 19.5 1.6 1 23 899 921 899 921 0.96
16 16 2.8e-05 0.0019 18.6 1.2 2 23 928 950 927 950 0.94

Sequence Information

Coding Sequence
ATGAGTGGCGTTCCTCAAGAATaTGAGATGGAGGTTGAAACATCAGTTGAGTTGGAGGCTTGTGAAGATGAATCTATATTGATACAAACTGTAAAGAATACAGTtgaagagaatgaagaaaatgaagaagctACGGAGGAATATTTTGTGGTCACACATATCCAGAATGACCAGAATGGTGAAATAGAGGTTACTAATGCAAAAGCGATTGATACATCTAGTCACCCTGAAGAGATTTCAAATTGGATGGATATGTGCAGAGTTTGTGCTAATTTAAATGACCATCTAATCCCTATTTTCGAGGGTGAGGGTGCTGAGCATGAGCTATGTAACAAAATTCATAAGTACCTCCCTATTCATGTATCTGAAACTGATAATTTGCCACTTCAGCTGTGTTACCACTGTGCAGCAACACTTTTAGCATGGCACGAATTAGCTGAAGGATGTCTGGATGCTGAACGTCGTCTTCTTCAAATACAAGAAGAATTTCAACATAAACAACAGccacATGATGAGCAGCAGAATCATATGAAAGGAGATCTGAATGAGGAGACAATTGTCAATGATACTGAAAGGTCCAGTAGAGTCCAGACAACATTTAAAGTATTCCTTGACACGCAGAATATATTTTGGAAGCCGTACAAAAGCCCAAATCAACCACATGACAGAAAACTCATGATGAGAAGGGATACAGACTCGGCTTGGATAACCGTTGTGGACGCGACCCTTCACCAGGCTCCAATGATGTCTGACCCACTGGCTAGTAATGATTCTGAAATTAAACAAGATAAGTCCAATGTATCGAAAGAAGGTATCACCAAGGGATACAGTAAATTTCACGCGCATACGATAGCCGTAGAGAATAATTTGAATGAGGAGCAGGAGAGAACAAGGACTAAATGTGAAACATGCTCACAAGAATTTGATCTGGCTGGAGACTTACAAGAGCATAGTAAAGTACACAAAGTTTTAACGGACATACAAGAATCTTATCAATGTCTAGAATGCGGAAAGTGTTTCAAACTAAAAGACTCATATCTAAGGCACATGAGAATACATACAGACGAGCGACCTTTTACCTGTCACATTTGTGGAAAACAATTCCGCGACTCCGGCGGTTTATCCAGACATCTAAAAGATGTGCACGCCAAAGTGAAAAACTTTTCCTGCGATATTTGCGGCAGGTCGTTTGCCTCCAAAGCTACCAGGGATGATCACCGTCGCACTCACACAGGAGAACGACCATACATCTGCGACTCGTGCGGCAAGACATTCAAATCAAAAGCGTCTCTCTATATACACAGCAAGCTGCATACAGATGAATTTCCACACCCGTGTTCCTActgtaataagaaatttcgtcGAAGACAAGAGATGCTGGCACATATCACCACTCATACCGGCGAGAAGAATTACGGATGTGACGTATGCTCAAAACGATTCCGTGTAAAATCGGAACTCGTCAGACATAAACTTATTCATTCCGAGGACAAGCCATTTGTGTGCACAAAGTTTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATACCGTTCAGCTCAAACGGCACTTTTATCCAGAAATAGTCCCGCACAATTGAATCGAAAATGCGCGGATCCTGGAGAGCAGGAAGTGACTGATCCCTTAGCGCAAACCGAAGAGTCTGACGAAGTTAAAGTAGAAGTGCTGACATACGACGAGAGTAGTCTGAATTCGGTGGATGGAAGCACCGACTCAGAGTACGAGCCGGAAAGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGACAATTGCTCGAAATTCTGTGATATCCAACGAACATGTCTCGAAACAAGCTAGGACGATGCATCCTTGTGAAAAATGTGAGCGAGTTTTCAAAAGGGAATTTCATTATAAGCGGCACGTGGCAAACTGCCACGAGAAAGTCGTGACAAGAAGCGACAGCGAGGACTGCACTGAAAGTATTAATGCGGAATCTTCGCAAAAGACCAAGCTCGTTGAAATTGAGGAACCGAATGTTACTgaagaagaaagtgaaacTGATGATAAGAGTGTTGATTGGGAAGCATGCAATAAGTCTAGAAGGAGGAGACTTCAGTCATATCCTTGCATGCATTGTGATTATACggctaagaaaaagaagttacTCGAATTACACAATATGGAATACCATCCAGAATTGTCGATTAAGAAGCAAAGTAAAAAGCCTAGAAGCATAGACAAAGAGACTGTAAAACGTGCAAGAATGGAAGTGAATGGAAGagtttattatcattgtaacGAATGTggtaaaaatctttattcccCTTATACATTCTCTTGGCATATGAGAATTCACACTGGTGAACGTCCGTTTACTTGTCATCTTTGCGGAAAACAATTCCGTGTCAATCAGGGATTGGCAAGACATCTACGCGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAACGCTGAGGATCACAGACGGATACATACTGGCGAGAGACCATACGTCTGCAACATATGTGGAAAAGCATTTAAACAAAAGGCTTCGCTGTTTGTGCATAATCGCACACATACTGACTTTTTTCCATTCAAATGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTGCATATCACTAAGCACACCGGTGAAAAACCCCATGCATGTGACATATGTGGTCGCCGGTTCCgcataaaatatgaattaaagcGACATCGACTGATACACTTCGATGAGAAACCTTGGCAATGTACAGACTGTGGCCTCTCTTTCCGCCAAAAGCGTTATTTAGTTAATCATAAAAAACTGAATCACAACACAATTCCTTCATTGCCTACGCACGAGTAA
Protein Sequence
MSGVPQEYEMEVETSVELEACEDESILIQTVKNTVEENEENEEATEEYFVVTHIQNDQNGEIEVTNAKAIDTSSHPEEISNWMDMCRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDNLPLQLCYHCAATLLAWHELAEGCLDAERRLLQIQEEFQHKQQPHDEQQNHMKGDLNEETIVNDTERSSRVQTTFKVFLDTQNIFWKPYKSPNQPHDRKLMMRRDTDSAWITVVDATLHQAPMMSDPLASNDSEIKQDKSNVSKEGITKGYSKFHAHTIAVENNLNEEQERTRTKCETCSQEFDLAGDLQEHSKVHKVLTDIQESYQCLECGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTDEFPHPCSYCNKKFRRRQEMLAHITTHTGEKNYGCDVCSKRFRVKSELVRHKLIHSEDKPFVCTKFGAPRKKSFAAYRSAQTALLSRNSPAQLNRKCADPGEQEVTDPLAQTEESDEVKVEVLTYDESSLNSVDGSTDSEYEPESTGTHIQRRNPTRTIARNSVISNEHVSKQARTMHPCEKCERVFKREFHYKRHVANCHEKVVTRSDSEDCTESINAESSQKTKLVEIEEPNVTEEESETDDKSVDWEACNKSRRRRLQSYPCMHCDYTAKKKKLLELHNMEYHPELSIKKQSKKPRSIDKETVKRARMEVNGRVYYHCNECGKNLYSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLPTHE